Collective conformations of DNA polymers assembled on surface density gradients

Journal of the American Chemical Society

Volumn 134, Issue 9, 2012, Pages 3954-3956

  Shemer, Gabriel ^a   Atsmon, Yahel ^a   Karzbrun, Eyal ^a   Bar Ziv, Roy H ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

DENSITY GRADIENTS; DNA POLYMERS; DOUBLE-STRANDED DNA (DS-DNA); EXCLUDED-VOLUME INTERACTIONS; POLYMER PHASIS; SPATIAL POSITIONS; SURFACE DENSITY;

CHEMISTRY; SYNTHESIS (CHEMICAL);

POLYMERS;

DOUBLE STRANDED DNA; POLYMER;

ARTICLE; BINDING SITE; DENSITY GRADIENT; DNA CONFORMATION; ENTROPY; FLUORESCENCE; KINETICS; MOLECULAR INTERACTION; PHOTOCHEMISTRY;

CENTRIFUGATION, DENSITY GRADIENT; DNA; MOLECULAR CONFORMATION; POLYMERS; SURFACE PROPERTIES;

EID: 84857845183     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja2106543     Document Type: Article

References (27)

1. Bustamante, C.; Marko, J.; Siggia, E.; Smith, S. Science 1994, 265, 1599.
2. Valle, F.; Favre, M.; De Los Rios, P.; Rosa, A.; Dietler, G. Phys. Rev. Lett. 2005, 95, No. 158105.
3. Pincus, P. Macromolecules 1991, 24, 2912.
4. Milner, S. Science 1991, 251, 905.
5. Zimmerman, S.; Harrison, B. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 1871.
6. Mirny, L.; Slutsky, M.; Wunderlich, Z.; Tafvizi, A.; Leith, J.; Kosmrlj, A. J. Phys. A: Math. Theor. 2009, 42, No. 434013.
7. Moiseev, L.; Ünlü, M.; Swan, A.; Goldberg, B.; Cantor, C. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 2623.
8. Gong, P.; Levicky, R. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 5301.
9. Kaiser, W.; Rant, U. J. Am. Chem. Soc. 2010, 132, 7935.
10. Spuhler, P.; Knezevic, J.; Yalcin, A.; Bao, Q.; Pringsheim, E.; Droge, P.; Rant, U.; Ünlü, M. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 1397.
11. Halperin, A.; Buhot, A.; Zhulina, E. Biophys. J. 2005, 89, 796.
12. Valignat, M.; Theodoly, O.; Crocker, J.; Russel, W.; Chaikin, P. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 4225.
13. Jin, R.; Wu, G.; Li, Z.; Mirkin, C. A.; Schatz, G. C. J. Am. Chem. Soc. 2003, 125, 1643.
14. Buxboim, A.; Bar-Dagan, M.; Frydman, V.; Zbaida, D.; Morpurgo, M.; Bar-Ziv, R. Small 2007, 3, 500.
15. Buxboim, A.; Daube, S.; Bar-Ziv, R. Mol. Syst. Biol. 2008, 4, 181.
16. Bar, M.; Bar-Ziv, R. Nano Lett. 2009, 9, 4462.
17. Daube, S.; Bracha, D.; Buxboim, A.; Bar-Ziv, R. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 2836.
18. Huang, L.; Seker, E.; Landers, J.; Begley, M.; Utz, M. Langmuir 2010, 26, 11574.
19. Leunissen, M.; Dreyfus, R.; Sha, R.; Seeman, N.; Chaikin, P. J. Am. Chem. Soc. 2010, 132, 1903.
20. Opdahl, A.; Petrovykh, D.; Kimura-Suda, H.; Tarlov, M.; Whitman, L. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 9.
21. Shen, G.; Tercero, N.; Gaspar, M.; Varughese, B.; Shepard, K.; Levicky, R. J. Am. Chem. Soc. 2006, 128, 8427.
22. Kegler, K.; Salomo, M.; Kremer, F. Phys. Rev. Lett. 2007, 98, No. 058304.
23. Kegler, K.; Konieczny, M.; Dominguez-Espinosa, G.; Gutsche, C.; Salomo, M.; Kremer, F.; Likos, C. Phys. Rev. Lett. 2008, 100, No. 118302.
24. Sarkar, A.; Robertson, R. B.; Fernandez, J. M. Proc. Natl. Acad. Sci. U.S.A 2004, 101, 12882.
25. Saffarian, S.; Kirchhausen, T. Biophys. J. 2008, 94, 2333.
26. Gell, C.; Berndt, M.; Enderlein, J.; Diez, S. J. Microsc. 2008, 94, 2333.
27. Witten, T.; Leibler, L.; Pincus, P. Macromolecules 1990, 23, 824.