Diversity of nonribosomal peptide synthetase and polyketide synthase genes in the genus Actinoplanes found in Mongolia

Journal of Antibiotics

Volumn 65, Issue 2, 2012, Pages 103-108

  Enkh Amgalan, Jigjiddorj ^a   Komaki, Hisayuki ^b   Daram, Damdinsuren ^a   Ando, Katsuhiko ^b   Tsetseg, Baljinova ^a  

^a INSTITUTE OF CHEMISTRY AND CHEMICAL TECHNOLOGY   (Mongolia)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

Actinoplanes; antimicrobial activity; nonribosomal peptide synthetase; polyketide synthase

Indexed keywords

NONRIBOSOMAL PEPTIDE SYNTHETASE; POLYKETIDE SYNTHASE; POLYKETIDE SYNTHASE I; POLYKETIDE SYNTHASE II; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ACTINOPLANES; ADENYLATION; ANTIFUNGAL ACTIVITY; ANTIMICROBIAL ACTIVITY; ARTICLE; BACTERIUM ISOLATE; GENE SEQUENCE; MOLECULAR CLONING; MONGOLIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SOIL ANALYSIS;

ANTI-BACTERIAL AGENTS; CULTURE MEDIA; DNA, RIBOSOMAL; GENETIC VARIATION; MICROBIAL SENSITIVITY TESTS; MICROMONOSPORACEAE; MONGOLIA; PEPTIDE SYNTHASES; PHYLOGENY; POLYKETIDE SYNTHASES; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SUBSTRATE SPECIFICITY;

ACTINOPLANES;

EID: 84857761442     PISSN: 00218820     EISSN: 18811469     Source Type: Journal    
DOI: 10.1038/ja.2011.115     Document Type: Article

References (21)

1. Norovsuren, Z., Oborotov, G. V., Zenova, G. M., Aliev, R. A. & Zviagintsev, D. G. [Haloalkaliphilic actinomycetes in soils of Mongolian desert steppes]. Izv. Akad. Nauk. Ser. Biol. 501-507 (2007).
2. Rachev, R. et al. Orange pigments of Streptomyces sp. C-72. I. Purification and antimicrobial activity. Acta. Microbiol. Bulg. 21, 57-61 (1987). (Pubitemid 18003414)
3. Lazzarini, A., Cavaletti, L., Toppo, G. & Marinelli, F. Rare genera of actinomycetes as potential producers of new antibiotics. Antonie Leeuwenhoek 78, 399-405 (2000). (Pubitemid 32405233)
4. Cavalleri, B., Arnone, A., Di Modugno, E., Nasini, G. & Goldstein, B. P. Structure and biological activity of lipiarmycin B. J. Antibiot. 41, 308-315 (1988). (Pubitemid 18096558)
5. Coronelli, C., Pagani, H., Bardone, M. R. & Lancini, G. C. Purpuromycin, a new antibiotic isolated from Actinoplanes ianthinogenes N. sp. J. Antibiot. 27, 161-168 (1974).
6. Muller, C. et al. Sequencing and analysis of the biosynthetic gene cluster of the lipopeptide antibiotic Friulimicin in Actinoplanes friuliensis. Antimicrob. Agents. Chemother. 51, 1028-1037 (2007). (Pubitemid 46355291)
7. Sosio,M.et al. Organization of the teicoplanin gene cluster in Actinoplanes teichomyceticus. Microbiology 150, 95-102 (2004). (Pubitemid 38111474)
8. Ayuso, A. et al. A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and nonribosomal peptide synthetase biosynthetic pathways. Appl. Microbiol. Biotechnol. 67, 795-806 (2005). (Pubitemid 40905099)
9. Khan, S. T. et al. Streptomyces associated with a marine sponge Haliclona sp.; biosynthetic genes for secondary metabolites and products. Environ. Microbiol. 13, 391-403 (2011).
10. Komaki, H. et al. Discovery of a pimaricin analog JBIR-13, from Streptomyces bicolor NBRC 12746 as predicted by sequence analysis of type I polyketide synthase gene. Appl. Microbiol. Biotechnol. 83, 127-133 (2009).
11. Tamura, T. & Hatano, K. Phylogenetic analysis of the genus Actinoplanes and transfer of Actinoplanes minutisporangius Ruan et al. 1986 and 'Actinoplanes aurantiacus' to Cryptosporangium minutisporangium comb. nov. and Cryptosporangium aurantiacum sp. nov. Int. J. Syst. Evol. Microbiol. 51, 2119-2125 (2001). (Pubitemid 33107433)
12. Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
13. Schirmer, A. et al. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl. Environ. Microbiol. 71, 4840-4849 (2005). (Pubitemid 41129543)
14. Metsa-Ketela, M. et al. Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various streptomyces species. Appl. Environ. Microbiol. 68, 4472-4479 (2002). (Pubitemid 34988130)
15. Stachelhaus, T., Mootz, H. D. & Marahiel, M. A. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol. 6, 493-505 (1999). (Pubitemid 29380764)
16. Ichikawa, T., Date, M., Ishikura, T. & Ozaki, A. Improvement of kasugamycin-producing strain by the agar piece method and the prototroph method. Folia. Microbiol. 16, 218-224 (1971).
17. Komaki, H. et al. Diversity of type-I polyketide synthase genes in actinomycetes isolated from Indonesia in 2005. 14th International Symp. on the Biology of Actinomycetes, No. 047, 215, Newcastle (2007).
18. Sohng, J. K., Oh, T. J., Lee, J. J. & Kim, C. G. Identification of a gene cluster of biosynthetic genes of rubradirin substructures in S. achromogenes var. rubradiris NRRL3061. Mol. Cells 7, 674-681 (1997).
19. Wenzel, S. C., Bode, H. B., Kochems, I. & Muller, R. A type I/type III polyketide synthase hybrid biosynthetic pathway for the structurally unique ansa compound kendomycin. Chembiochem 9, 2711-2721 (2008).
20. Nett, M., Ikeda, H. & Moore, B. S. Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat. Prod. Rep. 26, 1362-1384 (2009).
21. Nishida, H. et al. Generation of novel rapamycin structures by microbial manipulations. J. Antibiot. 48, 657-666 (1995).