-
4
-
-
0024290488
-
Helix signals in proteins
-
Presta LG, Rose GD. Helix signals in proteins. Science 1988; 240: 1632-1641.
-
(1988)
Science
, vol.240
, pp. 1632-1641
-
-
Presta, L.G.1
Rose, G.D.2
-
5
-
-
0027204024
-
Helix stop signals in proteins and peptides: the capping box
-
Harper ET, Rose GD. Helix stop signals in proteins and peptides: the capping box. Biochemistry 1993; 32: 7605-7609.
-
(1993)
Biochemistry
, vol.32
, pp. 7605-7609
-
-
Harper, E.T.1
Rose, G.D.2
-
7
-
-
0027212028
-
Design of helix ends. Amino acid preferences, hydrogen bonding and electrostatic interactions
-
Dasgupta S, Bell JA. Design of helix ends. Amino acid preferences, hydrogen bonding and electrostatic interactions. Int J Pept Protein Res 1993; 41: 499-511.
-
(1993)
Int J Pept Protein Res
, vol.41
, pp. 499-511
-
-
Dasgupta, S.1
Bell, J.A.2
-
8
-
-
0024972479
-
Capping and α-helix stability
-
Serrano L, Fersht AR. Capping and α-helix stability. Nature 1989; 342: 296-299.
-
(1989)
Nature
, vol.342
, pp. 296-299
-
-
Serrano, L.1
Fersht, A.R.2
-
10
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of α-helices
-
Richardson JS, Richardson DC. Amino acid preferences for specific locations at the ends of α-helices. Science 1988; 240: 1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
11
-
-
0027367977
-
Helix capping propensities in peptides parallel those in proteins
-
Chakrabarty A, Doig AJ, Baldwin RL. Helix capping propensities in peptides parallel those in proteins. Proc Natl Acad Sci USA 1993; 90: 11332-11336.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11332-11336
-
-
Chakrabarty, A.1
Doig, A.J.2
Baldwin, R.L.3
-
12
-
-
0027327319
-
Common ring motifs in proteins involving asparagine and glutamine amide groups hydrogen bonded to main chain atoms
-
Questel JYL, Morris DG, Maccallum PH, Poet R, Milner-White EJ. Common ring motifs in proteins involving asparagine and glutamine amide groups hydrogen bonded to main chain atoms. J Mol Biol 1993; 231: 888-896.
-
(1993)
J Mol Biol
, vol.231
, pp. 888-896
-
-
Questel, J.Y.L.1
Morris, D.G.2
Maccallum, P.H.3
Poet, R.4
Milner-White, E.J.5
-
14
-
-
0033548459
-
A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to Residues ahead in sequence: their occurrence at α-helical N-termini and in other situations
-
Wan W-Y, Milner-White EJ. A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to Residues ahead in sequence: their occurrence at α-helical N-termini and in other situations. J Mol Biol 1999; 286: 1633-1649.
-
(1999)
J Mol Biol
, vol.286
, pp. 1633-1649
-
-
Wan, W.-Y.1
Milner-White, E.J.2
-
15
-
-
0034062925
-
Deterministic features of side-chain main chain hydrogen bonds in globular protein structures
-
Eswar N, Ramakrishnan C. Deterministic features of side-chain main chain hydrogen bonds in globular protein structures. Protein Eng 2000; 13: 227-238.
-
(2000)
Protein Eng
, vol.13
, pp. 227-238
-
-
Eswar, N.1
Ramakrishnan, C.2
-
16
-
-
0033061876
-
Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures
-
Eswar N, Ramakrishnan C. Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures. Protein Eng 1999; 12: 447-455.
-
(1999)
Protein Eng
, vol.12
, pp. 447-455
-
-
Eswar, N.1
Ramakrishnan, C.2
-
17
-
-
0033104768
-
Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities
-
Vijayakumar M, Qian H, Zhou HX. Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities. Proteins Struct Funct Gen 1999; 34: 497-507.
-
(1999)
Proteins Struct Funct Gen
, vol.34
, pp. 497-507
-
-
Vijayakumar, M.1
Qian, H.2
Zhou, H.X.3
-
18
-
-
0027988211
-
The role of side-chain hydrogen bonds in the formation and stabilization of secondary structure in soluble proteins
-
Bordo D, Argos P. The role of side-chain hydrogen bonds in the formation and stabilization of secondary structure in soluble proteins. J Mol Biol 1994; 243: 504-519.
-
(1994)
J Mol Biol
, vol.243
, pp. 504-519
-
-
Bordo, D.1
Argos, P.2
-
19
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson JS. The anatomy and taxonomy of protein structure. Adv Protein Chem 1981; 34; 167-339.
-
(1981)
Adv Protein Chem
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
20
-
-
0027530219
-
Termination of right-handed helices in proteins by residues in left-handed helical conformation
-
Nagarajaram HA, Sowdhamini R, Ramakrishnan C. Balaram P. Termination of right-handed helices in proteins by residues in left-handed helical conformation. FEBS Lett 1993; 321: 79-83.
-
(1993)
FEBS Lett
, vol.321
, pp. 79-83
-
-
Nagarajaram, H.A.1
Sowdhamini, R.2
Ramakrishnan, C.3
Balaram, P.4
-
21
-
-
0027934751
-
Conformational characteristics of asparaginyl residues in proteins
-
Srinivasan N, Anuradha VS, Ramakrishnan C, Sowdhamini R. Balaram P. Conformational characteristics of asparaginyl residues in proteins. Int J Pept Protein Res 1994; 44: 112-122.
-
(1994)
Int J Pept Protein Res
, vol.44
, pp. 112-122
-
-
Srinivasan, N.1
Anuradha, V.S.2
Ramakrishnan, C.3
Sowdhamini, R.4
Balaram, P.5
-
22
-
-
0035882544
-
Role of non-Glycine residues in left-handed helical conformation for the conformational stability of human lysozyme
-
Takano K, Yamagata Y, Yutani K. Role of non-Glycine residues in left-handed helical conformation for the conformational stability of human lysozyme. Proteins: Struct Funct Gen 2001; 44: 233-243.
-
(2001)
Proteins: Struct Funct Gen
, vol.44
, pp. 233-243
-
-
Takano, K.1
Yamagata, Y.2
Yutani, K.3
-
23
-
-
0021160478
-
DNA cloning of Plasmodium falciparum circumspozoite gene. Amino acid sequence of repetitive epitope
-
Enea V, Ellis J, Zavala F, Argot DE, Asavanich A, Masuda A, Quakyi I, Nussenzweig RS. DNA cloning of Plasmodium falciparum circumspozoite gene. Amino acid sequence of repetitive epitope. Science 1984; 225: 628-630.
-
(1984)
Science
, vol.225
, pp. 628-630
-
-
Enea, V.1
Ellis, J.2
Zavala, F.3
Argot, D.E.4
Asavanich, A.5
Masuda, A.6
Quakyi, I.7
Nussenzweig, R.S.8
-
24
-
-
0022587370
-
An asparagine-rich protein from blood stages of Plasmodium falciparum shares determinants with sporozoites
-
Stahl HD, Bianco AE, Crewther PE, Burkot T, Coppel RL, Brown GV, Anders RF, Kemp DJ. An asparagine-rich protein from blood stages of Plasmodium falciparum shares determinants with sporozoites. Nucleic Acids Res 1986; 14: 3089-3102.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 3089-3102
-
-
Stahl, H.D.1
Bianco, A.E.2
Crewther, P.E.3
Burkot, T.4
Coppel, R.L.5
Brown, G.V.6
Anders, R.F.7
Kemp, D.J.8
-
25
-
-
0022553228
-
A Plasmodium falciparum antigen containing clusters of asparagine residues
-
Wahlgren M, Aslund L, Franzén L, Sundvall M, Wåhlin B, Berzins K, McNicol LA, Björkman A, Wigzell H, Perlmann P, Pettersson U. A Plasmodium falciparum antigen containing clusters of asparagine residues. Proc Natl Acad Sci USA 1986; 83: 2677-2681.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 2677-2681
-
-
Wahlgren, M.1
Aslund, L.2
Franzén, L.3
Sundvall, M.4
Wåhlin, B.5
Berzins, K.6
McNicol, L.A.7
Björkman, A.8
Wigzell, H.9
Perlmann, P.10
Pettersson, U.11
-
26
-
-
0038100303
-
Predicted conformations for the immunodominant region of the circumsporozoite protein of the human malaria parasite Plasmodium falciparum
-
Gibson KD, Scheraga HA. Predicted conformations for the immunodominant region of the circumsporozoite protein of the human malaria parasite Plasmodium falciparum. Proc Natl Acad Sci USA 1986; 83: 5649-5653.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 5649-5653
-
-
Gibson, K.D.1
Scheraga, H.A.2
-
27
-
-
0033080367
-
Glutamine repeats and neurodegenerative disorders
-
Perutz MF. Glutamine repeats and neurodegenerative disorders. Mol Aspects Trends Biochem Sci 1999; 24: 58-63.
-
(1999)
Mol Aspects Trends Biochem Sci
, vol.24
, pp. 58-63
-
-
Perutz, M.F.1
-
28
-
-
0028972448
-
Polyglutamine expansion as a pathological epitope in Huntington's disease and four dominant cerebellar ataxias
-
Trottier Y, Lutz Y, Stevanin G, Imbert G, Devys D, Cancel G, Saudou F, Weber C, David G, Tora L, Agid Y, Brice A, Mandel J-L. Polyglutamine expansion as a pathological epitope in Huntington's disease and four dominant cerebellar ataxias. Nature 1995; 378: 403-406.
-
(1995)
Nature
, vol.378
, pp. 403-406
-
-
Trottier, Y.1
Lutz, Y.2
Stevanin, G.3
Imbert, G.4
Devys, D.5
Cancel, G.6
Saudou, F.7
Weber, C.8
David, G.9
Tora, L.10
Agid, Y.11
Brice, A.12
Mandel, J.-L.13
-
29
-
-
0036327065
-
Early mitochondrial calcium defects in Huntington's disease are a direct effect of polyglutamines
-
Panov AV, Gutekunst C-A, Leavitt BR, Hayden MR, Burke JR, Strittmatter WJ, Greenamyre JT. Early mitochondrial calcium defects in Huntington's disease are a direct effect of polyglutamines. Nat Neurosci 2002; 5: 731-736.
-
(2002)
Nat Neurosci
, vol.5
, pp. 731-736
-
-
Panov, A.V.1
Gutekunst, C.-A.2
Leavitt, B.R.3
Hayden, M.R.4
Burke, J.R.5
Strittmatter, W.J.6
Greenamyre, J.T.7
-
30
-
-
0033551063
-
Self-assembly of polyglutamine containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology
-
Scherzinger A, Sittler A, Schweiger K, Heiser V, Lurz R, Hasenbank R, Bates GP, Lehrach H, Wanker EE. Self-assembly of polyglutamine containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology. Proc Natl Acad Sci USA 1999; 96: 4604-4609.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4604-4609
-
-
Scherzinger, A.1
Sittler, A.2
Schweiger, K.3
Heiser, V.4
Lurz, R.5
Hasenbank, R.6
Bates, G.P.7
Lehrach, H.8
Wanker, E.E.9
-
31
-
-
18544400323
-
Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo
-
Scherzinger A, Lurz R, Turmaine M, Mangiarini L, Hollenbach B, Hasenbank R, Bates GP, Davies SW, Lehrach H, Wanker EE. Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo. Cell 1997; 90: 549-558.
-
(1997)
Cell
, vol.90
, pp. 549-558
-
-
Scherzinger, A.1
Lurz, R.2
Turmaine, M.3
Mangiarini, L.4
Hollenbach, B.5
Hasenbank, R.6
Bates, G.P.7
Davies, S.W.8
Lehrach, H.9
Wanker, E.E.10
-
32
-
-
34249290108
-
Atomic structures of amyloid cross-β spines reveal varied steric zippers
-
Sawaya MR, Sambashivan S, Nelson R, Ivanova MI, Sievers SA, Apostol MI, Thompson MJ, Balbirnie M, Wiltzius JJW, McFarlane HT, Madsen AO, Riekel C, Eisenberg D. Atomic structures of amyloid cross-β spines reveal varied steric zippers. Nature 2007; 447: 453-457.
-
(2007)
Nature
, vol.447
, pp. 453-457
-
-
Sawaya, M.R.1
Sambashivan, S.2
Nelson, R.3
Ivanova, M.I.4
Sievers, S.A.5
Apostol, M.I.6
Thompson, M.J.7
Balbirnie, M.8
Wiltzius, J.J.W.9
McFarlane, H.T.10
Madsen, A.O.11
Riekel, C.12
Eisenberg, D.13
-
33
-
-
68149124204
-
Structural effects of a dimer interface mutation on catalytic activity of triosephosphate isomerase. The role of conserved residues and complementary mutations
-
Banerjee M, Balaram H, Balaram P. Structural effects of a dimer interface mutation on catalytic activity of triosephosphate isomerase. The role of conserved residues and complementary mutations. FEBS J 2009; 276: 4169-4183.
-
(2009)
FEBS J
, vol.276
, pp. 4169-4183
-
-
Banerjee, M.1
Balaram, H.2
Balaram, P.3
-
34
-
-
0037422593
-
Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2Å resolution
-
Jogl G, Rozovsky S, McDermott AE, Tong L. Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2Å resolution. Proc Natl Acad Sci USA 2003; 100: 50-55.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 50-55
-
-
Jogl, G.1
Rozovsky, S.2
McDermott, A.E.3
Tong, L.4
-
35
-
-
0032709104
-
The crystal structure of triosephosphate isomerase (TIM) from Thermotoga maritima: a comparative thermostability structural analysis of ten different TIM structures
-
Maes D, Zeelen JP, Thanki N, Beaucamp N, Alvarez M, Thi MHD, Backmann J, Martial JA, Wyns L, Jaenicke R, Wierenga RK. The crystal structure of triosephosphate isomerase (TIM) from Thermotoga maritima: a comparative thermostability structural analysis of ten different TIM structures. Proteins Struct Funct Bioinf 1999; 37: 441-453.
-
(1999)
Proteins Struct Funct Bioinf
, vol.37
, pp. 441-453
-
-
Maes, D.1
Zeelen, J.P.2
Thanki, N.3
Beaucamp, N.4
Alvarez, M.5
Thi, M.H.D.6
Backmann, J.7
Martial, J.A.8
Wyns, L.9
Jaenicke, R.10
Wierenga, R.K.11
-
36
-
-
0027146064
-
The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of an eight-residue loop
-
Borchert TV, Abagyan R, Kishan KV, Zeelan JP, Wierenga RK. The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of an eight-residue loop. Structure 1993; 1: 205-213.
-
(1993)
Structure
, vol.1
, pp. 205-213
-
-
Borchert, T.V.1
Abagyan, R.2
Kishan, K.V.3
Zeelan, J.P.4
Wierenga, R.K.5
-
37
-
-
77952752455
-
On the evolutionary conservation of hydrogen bonds made by buried polar amino acids: the hidden joists, braces and trusses of protein architecture
-
Worth CL, Blundell T. On the evolutionary conservation of hydrogen bonds made by buried polar amino acids: the hidden joists, braces and trusses of protein architecture. BMC Evol Biol 2010; 10: 161-171.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 161-171
-
-
Worth, C.L.1
Blundell, T.2
-
38
-
-
0029017638
-
The application of hydrogen bonding analysis in X-ray crystallography to help orientate asparagin, glutamine and histidine side chains
-
McDonald IK, Thornton JM. The application of hydrogen bonding analysis in X-ray crystallography to help orientate asparagin, glutamine and histidine side chains. Protein Eng 1994; 8: 217-224.
-
(1994)
Protein Eng
, vol.8
, pp. 217-224
-
-
McDonald, I.K.1
Thornton, J.M.2
-
39
-
-
0033582329
-
Asparagine and glutamine rotamers: B-factor cutoff and correction of amide flips yield distinct clustering
-
Lovell SC, Word JM, Richardson JS, Richardson DC. Asparagine and glutamine rotamers: B-factor cutoff and correction of amide flips yield distinct clustering. Proc Natl Acad Sci USA 1999; 96: 400-405.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 400-405
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
40
-
-
0033614004
-
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation
-
Word JM, Lovell SC, Richardson JS, Richardson DC. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J Mol Biol 1999; 285: 1735-1747.
-
(1999)
J Mol Biol
, vol.285
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
41
-
-
34547593171
-
NA-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures
-
Weichenberger CX, Sippl MJ. NA-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures. Nucleic Acids Res 2007; 35: W403-W406.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Weichenberger, C.X.1
Sippl, M.J.2
-
42
-
-
0014347799
-
Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units
-
Venkatachalam CM. Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units. Biopolymers 1968; 6: 1425-1436.
-
(1968)
Biopolymers
, vol.6
, pp. 1425-1436
-
-
Venkatachalam, C.M.1
-
43
-
-
0024279235
-
Analysis and prediction of the different types of β-turn in proteins
-
Wilmot CM. Thornton JM. Analysis and prediction of the different types of β-turn in proteins. J Mol Biol 1988; 203: 221-232.
-
(1988)
J Mol Biol
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
45
-
-
0001428018
-
L -conformation at the ends of helices
-
JaenickeR, editor. North-Holland New York: Elsevier;
-
L -conformation at the ends of helices. In: Jaenicke R, editor. Protein folding. North-Holland New York: Elsevier; 1980. pp 53-61.
-
(1980)
Protein folding
, pp. 53-61
-
-
Schellman, C.1
-
46
-
-
0032488824
-
Stereochemical punctuation marks in protein structures: glycine and proline containing helix stop signals
-
Gunasekaran K, Nagarajaram HA, Ramakrishnan C, Balaram P. Stereochemical punctuation marks in protein structures: glycine and proline containing helix stop signals. J Mol Biol 1998; 275: 917-932.
-
(1998)
J Mol Biol
, vol.275
, pp. 917-932
-
-
Gunasekaran, K.1
Nagarajaram, H.A.2
Ramakrishnan, C.3
Balaram, P.4
-
47
-
-
33645450694
-
Crystal structure of an NPNA-repeat motif from the circumsporozoite protein of malaria parasite, Plasmodium falciparum
-
Ghasparin A, Moehle K, Linden A, Robinson JA. Crystal structure of an NPNA-repeat motif from the circumsporozoite protein of malaria parasite, Plasmodium falciparum. Chem Commun 2006: 174-176.
-
Chem Commun
, vol.2006
, pp. 174-176
-
-
Ghasparin, A.1
Moehle, K.2
Linden, A.3
Robinson, J.A.4
-
49
-
-
77952335945
-
Spontaneous formation of polyglutamine nanotubes with molecular dynamics simulations
-
Laghaei R, Mousseau N. Spontaneous formation of polyglutamine nanotubes with molecular dynamics simulations. J Chem Phys 2010; 132: 165102-165109.
-
(2010)
J Chem Phys
, vol.132
, pp. 165102-165109
-
-
Laghaei, R.1
Mousseau, N.2
-
50
-
-
0141765883
-
Fabrication of novel biomaterials through molecular self-assembly
-
Zhang S. Fabrication of novel biomaterials through molecular self-assembly. Nature Biotech 2003; 21: 1171-1178.
-
(2003)
Nature Biotech
, vol.21
, pp. 1171-1178
-
-
Zhang, S.1
|