메뉴 건너뛰기




Volumn 91, Issue 4, 2012, Pages 349-356

Mapping receptor-ligand interactions with synthetic peptide arrays: Exploring the structure and function of membrane receptors

Author keywords

Maltose importer; Peptide arrays; Peroxisomal membrane proteins; Protein interaction domains; Protein protein interaction; SPOT technology

Indexed keywords

MALTOSE BINDING PROTEIN; MEMBRANE RECEPTOR; RECEPTOR PROTEIN;

EID: 84857374313     PISSN: 01719335     EISSN: 16181298     Source Type: Journal    
DOI: 10.1016/j.ejcb.2011.03.004     Document Type: Short Survey
Times cited : (5)

References (61)
  • 3
    • 34247579608 scopus 로고    scopus 로고
    • Mapping putative contact sites between subunits in a bacterial ATP-binding cassette (ABC) transporter by synthetic peptide libraries
    • Blüschke B., Eckey V., Kunert B., Berendt S., Landmesser H., Portwich M., Volkmer R., Schneider E. Mapping putative contact sites between subunits in a bacterial ATP-binding cassette (ABC) transporter by synthetic peptide libraries. J. Mol. Biol. 2007, 369:386-399.
    • (2007) J. Mol. Biol. , vol.369 , pp. 386-399
    • Blüschke, B.1    Eckey, V.2    Kunert, B.3    Berendt, S.4    Landmesser, H.5    Portwich, M.6    Volkmer, R.7    Schneider, E.8
  • 4
    • 0032479179 scopus 로고    scopus 로고
    • Anatomy of hot spots in protein interfaces
    • Bogan A.A., Thorn K.S. Anatomy of hot spots in protein interfaces. J. Mol. Biol. 1998, 280:1-9.
    • (1998) J. Mol. Biol. , vol.280 , pp. 1-9
    • Bogan, A.A.1    Thorn, K.S.2
  • 5
    • 1942509578 scopus 로고    scopus 로고
    • An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies
    • Boisguerin P., Leben R., Ay B., Radziwill G., Moelling K., Volkmer-Engert R. An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies. Chem. Biol. 2004, 11:449-459.
    • (2004) Chem. Biol. , vol.11 , pp. 449-459
    • Boisguerin, P.1    Leben, R.2    Ay, B.3    Radziwill, G.4    Moelling, K.5    Volkmer-Engert, R.6
  • 6
    • 38849087496 scopus 로고    scopus 로고
    • Characterization of a putative phosphorylation switch: adaptation of SPOT synthesis to analyze PDZ domain regulation mechanisms
    • Boisguerin P., Ay B., Radziwill G., Fritz R.D., Moelling K., Volkmer R. Characterization of a putative phosphorylation switch: adaptation of SPOT synthesis to analyze PDZ domain regulation mechanisms. ChemBioChem 2007, 8:2302-2307.
    • (2007) ChemBioChem , vol.8 , pp. 2302-2307
    • Boisguerin, P.1    Ay, B.2    Radziwill, G.3    Fritz, R.D.4    Moelling, K.5    Volkmer, R.6
  • 9
    • 0028916599 scopus 로고
    • A hot spot of binding energy in a hormone-receptor interface
    • Clackson T., Wells J.A. A hot spot of binding energy in a hormone-receptor interface. Science 1995, 267:383-386.
    • (1995) Science , vol.267 , pp. 383-386
    • Clackson, T.1    Wells, J.A.2
  • 10
    • 0024403619 scopus 로고
    • High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
    • Cunningham B.C., Wells J.A. High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 1989, 244:1081-1085.
    • (1989) Science , vol.244 , pp. 1081-1085
    • Cunningham, B.C.1    Wells, J.A.2
  • 12
    • 0033909565 scopus 로고    scopus 로고
    • Identifying nature's protein Lego set
    • Das S., Smith T.F. Identifying nature's protein Lego set. Adv. Protein Chem. 2000, 54:159-183.
    • (2000) Adv. Protein Chem. , vol.54 , pp. 159-183
    • Das, S.1    Smith, T.F.2
  • 13
    • 58549092371 scopus 로고    scopus 로고
    • Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density
    • Feng W., Zhang M. Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density. Nat. Rev. Neurosci. 2009, 10:87-99.
    • (2009) Nat. Rev. Neurosci. , vol.10 , pp. 87-99
    • Feng, W.1    Zhang, M.2
  • 14
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S., Song O. A novel genetic system to detect protein-protein interactions. Nature 1989, 340:245-246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 15
    • 0026656122 scopus 로고
    • SPOT-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support
    • Frank R. SPOT-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 1992, 48:9217.
    • (1992) Tetrahedron , vol.48 , pp. 9217
    • Frank, R.1
  • 17
    • 0000951677 scopus 로고
    • Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid
    • Geysen H.M., Meloen R.H., Barteling S.J. Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid. Proc. Natl. Acad. Sci. U. S. A. 1984, 81:3998-4002.
    • (1984) Proc. Natl. Acad. Sci. U. S. A. , vol.81 , pp. 3998-4002
    • Geysen, H.M.1    Meloen, R.H.2    Barteling, S.J.3
  • 18
    • 33644841721 scopus 로고    scopus 로고
    • Protein linguistics - a grammar for modular protein assembly?
    • Gimona M. Protein linguistics - a grammar for modular protein assembly?. Nat. Rev. Mol. Cell Biol. 2006, 7:68-73.
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 68-73
    • Gimona, M.1
  • 19
    • 34250721648 scopus 로고    scopus 로고
    • Peptide arrays on cellulose support: SPOT synthesis, a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion
    • Hilpert K., Winkler D.F., Hancock R.E. Peptide arrays on cellulose support: SPOT synthesis, a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion. Nat. Protoc. 2007, 2:1333-1349.
    • (2007) Nat. Protoc. , vol.2 , pp. 1333-1349
    • Hilpert, K.1    Winkler, D.F.2    Hancock, R.E.3
  • 21
    • 0032189646 scopus 로고    scopus 로고
    • Dictionary of recurrent domains in protein structures
    • Holm L., Sander C. Dictionary of recurrent domains in protein structures. Proteins 1998, 33:88-96.
    • (1998) Proteins , vol.33 , pp. 88-96
    • Holm, L.1    Sander, C.2
  • 23
    • 34547643210 scopus 로고    scopus 로고
    • PDZ domains: folding and binding
    • Jemth P., Gianni S. PDZ domains: folding and binding. Biochemistry 2007, 46:8701-8708.
    • (2007) Biochemistry , vol.46 , pp. 8701-8708
    • Jemth, P.1    Gianni, S.2
  • 27
    • 79953894417 scopus 로고    scopus 로고
    • Computational analysis of modular protein architectures
    • Wiley-VCH, Weinheim, G. Cesareni, M. Gimona, M. Sudol, M. Yaffe (Eds.)
    • Linding R., Letunic I., Gibson T.J., Bork P. Computational analysis of modular protein architectures. Modular Protein Domains 2005, 439-476. Wiley-VCH, Weinheim. G. Cesareni, M. Gimona, M. Sudol, M. Yaffe (Eds.).
    • (2005) Modular Protein Domains , pp. 439-476
    • Linding, R.1    Letunic, I.2    Gibson, T.J.3    Bork, P.4
  • 28
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • Lichtarge O., Bourne H.R., Cohen F.E. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 1996, 257:342-358.
    • (1996) J. Mol. Biol. , vol.257 , pp. 342-358
    • Lichtarge, O.1    Bourne, H.R.2    Cohen, F.E.3
  • 29
    • 0037609791 scopus 로고    scopus 로고
    • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces
    • Ma B., Elkayam T., Wolfson H., Nussinov R. Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:5772-5777.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 5772-5777
    • Ma, B.1    Elkayam, T.2    Wolfson, H.3    Nussinov, R.4
  • 30
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • MacBeath G., Schreiber S.L. Printing proteins as microarrays for high-throughput function determination. Science 2000, 289:1760-1763.
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 31
    • 77953424518 scopus 로고    scopus 로고
    • A study to assess the cross-reactivity of cellulose membrane-bound peptides with detection systems: an analysis at the amino acid level
    • Mahrenholz C.C., Tapia V., Stigler R.D., Volkmer R. A study to assess the cross-reactivity of cellulose membrane-bound peptides with detection systems: an analysis at the amino acid level. J. Pept. Sci. 2010, 16:297-302.
    • (2010) J. Pept. Sci. , vol.16 , pp. 297-302
    • Mahrenholz, C.C.1    Tapia, V.2    Stigler, R.D.3    Volkmer, R.4
  • 32
    • 0030152613 scopus 로고    scopus 로고
    • Improved performances of spot multiple peptide synthesis
    • Molina F., Laune D., Gougat C., Pau B., Granier C. Improved performances of spot multiple peptide synthesis. Pept. Res. 1996, 9:151-155.
    • (1996) Pept. Res. , vol.9 , pp. 151-155
    • Molina, F.1    Laune, D.2    Gougat, C.3    Pau, B.4    Granier, C.5
  • 33
    • 0012927828 scopus 로고    scopus 로고
    • PDZ domain proteins: plug and play! Sci. STKE, RE7.
    • Nourry, C., Grant, S.G., Borg, J.P., 2003. PDZ domain proteins: plug and play! Sci. STKE, RE7.
    • (2003)
    • Nourry, C.1    Grant, S.G.2    Borg, J.P.3
  • 36
    • 33646785070 scopus 로고    scopus 로고
    • Probing the ligand binding specificity and analyzing the folding state of SPOT synthesized FBP28 WW domain variants
    • Przezdziak J., Tremmel S., Kretzschmar I., Beyermann M., Bienert M., Volkmer R. Probing the ligand binding specificity and analyzing the folding state of SPOT synthesized FBP28 WW domain variants. ChemBioChem 2006, 7:780-788.
    • (2006) ChemBioChem , vol.7 , pp. 780-788
    • Przezdziak, J.1    Tremmel, S.2    Kretzschmar, I.3    Beyermann, M.4    Bienert, M.5    Volkmer, R.6
  • 38
    • 0031955920 scopus 로고    scopus 로고
    • Mapping of the interleukin-10/interleukin-10 receptor combining site
    • Reineke U., Sabat R., Volk H.D., Schneider-Mergener J. Mapping of the interleukin-10/interleukin-10 receptor combining site. Protein Sci. 1998, 7:951-960.
    • (1998) Protein Sci. , vol.7 , pp. 951-960
    • Reineke, U.1    Sabat, R.2    Volk, H.D.3    Schneider-Mergener, J.4
  • 39
    • 0033029907 scopus 로고    scopus 로고
    • Antigen sequence- and library-based mapping of linear and discontinuous protein-protein-interaction sites by spot synthesis
    • Reineke U., Kramer A., Schneider-Mergener J. Antigen sequence- and library-based mapping of linear and discontinuous protein-protein-interaction sites by spot synthesis. Curr. Top. Microbiol. Immunol. 1999, 243:23-36.
    • (1999) Curr. Top. Microbiol. Immunol. , vol.243 , pp. 23-36
    • Reineke, U.1    Kramer, A.2    Schneider-Mergener, J.3
  • 41
    • 67650233956 scopus 로고    scopus 로고
    • Antibody epitope mapping using de novo generated synthetic peptide libraries
    • Reineke U. Antibody epitope mapping using de novo generated synthetic peptide libraries. Methods Mol. Biol. 2009, 524:203-211.
    • (2009) Methods Mol. Biol. , vol.524 , pp. 203-211
    • Reineke, U.1
  • 42
    • 3042724871 scopus 로고    scopus 로고
    • Peroxisomal membrane proteins contain common Pex19p-binding sites that are an integral part of their targeting signals
    • Rottensteiner H., Kramer A., Lorenzen S., Stein K., Landgraf C., Volkmer-Engert R., Erdmann R. Peroxisomal membrane proteins contain common Pex19p-binding sites that are an integral part of their targeting signals. Mol. Biol. Cell 2004, 15:3406-3417.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 3406-3417
    • Rottensteiner, H.1    Kramer, A.2    Lorenzen, S.3    Stein, K.4    Landgraf, C.5    Volkmer-Engert, R.6    Erdmann, R.7
  • 44
    • 34547854309 scopus 로고    scopus 로고
    • Conservation of PEX19-binding motifs required for protein targeting to mammalian peroxisomal and trypanosome glycosomal membranes
    • Saveria T., Halbach A., Erdmann R., Volkmer-Engert R., Landgraf C., Rottensteiner H., Parsons M. Conservation of PEX19-binding motifs required for protein targeting to mammalian peroxisomal and trypanosome glycosomal membranes. Eukaryot. Cell 2007, 6:1439-1449.
    • (2007) Eukaryot. Cell , vol.6 , pp. 1439-1449
    • Saveria, T.1    Halbach, A.2    Erdmann, R.3    Volkmer-Engert, R.4    Landgraf, C.5    Rottensteiner, H.6    Parsons, M.7
  • 45
    • 16244407724 scopus 로고    scopus 로고
    • Identification of a novel, intraperoxisomal pex14-binding site in pex13: association of pex13 with the docking complex is essential for peroxisomal matrix protein import
    • Schell-Steven A., Stein K., Amoros M., Landgraf C., Volkmer-Engert R., Erdmann R., Rottensteiner H. Identification of a novel, intraperoxisomal pex14-binding site in pex13: association of pex13 with the docking complex is essential for peroxisomal matrix protein import. Mol. Cell Biol. 2005, 25:3007-3018.
    • (2005) Mol. Cell Biol. , vol.25 , pp. 3007-3018
    • Schell-Steven, A.1    Stein, K.2    Amoros, M.3    Landgraf, C.4    Volkmer-Engert, R.5    Erdmann, R.6    Rottensteiner, H.7
  • 46
    • 33745989572 scopus 로고    scopus 로고
    • Affinity of TatCd for TatAd elucidates its receptor function in the Bacillus subtilis twin arginine translocation (Tat) translocase system
    • Schreiber S., Stengel R., Westermann M., Volkmer-Engert R., Pop O.I., Müller J.P. Affinity of TatCd for TatAd elucidates its receptor function in the Bacillus subtilis twin arginine translocation (Tat) translocase system. J. Biol. Chem. 2006, 281:19977-19984.
    • (2006) J. Biol. Chem. , vol.281 , pp. 19977-19984
    • Schreiber, S.1    Stengel, R.2    Westermann, M.3    Volkmer-Engert, R.4    Pop, O.I.5    Müller, J.P.6
  • 47
    • 0025112794 scopus 로고
    • Searching for peptide ligands with an epitope library
    • Scott J.K., Smith G.P. Searching for peptide ligands with an epitope library. Science 1990, 249:386-390.
    • (1990) Science , vol.249 , pp. 386-390
    • Scott, J.K.1    Smith, G.P.2
  • 48
    • 0030821916 scopus 로고    scopus 로고
    • Linguistic approaches to biological sequences
    • Searls D.B. Linguistic approaches to biological sequences. Comput. Appl. Biosci. 1997, 13:333-344.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 333-344
    • Searls, D.B.1
  • 49
    • 0037079055 scopus 로고    scopus 로고
    • The language of genes
    • Searls D.B. The language of genes. Nature 2002, 420:211-217.
    • (2002) Nature , vol.420 , pp. 211-217
    • Searls, D.B.1
  • 50
    • 0021818675 scopus 로고
    • Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface
    • Smith G.P. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 1985, 228:1315-1317.
    • (1985) Science , vol.228 , pp. 1315-1317
    • Smith, G.P.1
  • 51
    • 0014935646 scopus 로고
    • Natural selection and the concept of a protein space
    • Smith J.M. Natural selection and the concept of a protein space. Nature 1970, 225:563-564.
    • (1970) Nature , vol.225 , pp. 563-564
    • Smith, J.M.1
  • 52
    • 0032541641 scopus 로고    scopus 로고
    • From Src Homology domains to other signaling modules: proposal of the protein recognition code
    • Sudol M. From Src Homology domains to other signaling modules: proposal of the protein recognition code. Oncogene 1998, 17:1469-1474.
    • (1998) Oncogene , vol.17 , pp. 1469-1474
    • Sudol, M.1
  • 54
    • 34250748507 scopus 로고    scopus 로고
    • Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries
    • Tonikian R., Zhang Y., Boone C., Sidhu S.S. Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries. Nat. Protoc. 2007, 2:1368-1386.
    • (2007) Nat. Protoc. , vol.2 , pp. 1368-1386
    • Tonikian, R.1    Zhang, Y.2    Boone, C.3    Sidhu, S.S.4
  • 57
    • 70349554162 scopus 로고    scopus 로고
    • Synthesis and application of peptide arrays: Quo vadis SPOT technology
    • Volkmer R. Synthesis and application of peptide arrays: Quo vadis SPOT technology. ChemBioChem 2009, 10:1431-1442.
    • (2009) ChemBioChem , vol.10 , pp. 1431-1442
    • Volkmer, R.1
  • 58
    • 0031562028 scopus 로고    scopus 로고
    • Stable attachment of the HMB-linker to continuous cellulose membranes for parallel solid phase spot synthesis
    • Volkmer-Engert R., Hoffman B., Schneider-Mergener J. Stable attachment of the HMB-linker to continuous cellulose membranes for parallel solid phase spot synthesis. Tetrahedron Lett. 1997, 38:1029-1032.
    • (1997) Tetrahedron Lett. , vol.38 , pp. 1029-1032
    • Volkmer-Engert, R.1    Hoffman, B.2    Schneider-Mergener, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.