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Volumn 147, Issue 3, 2012, Pages 443-451

The population genetics of quechuas, the largest native south american group: Autosomal sequences, SNPs, and microsatellites evidence high level of diversity

Author keywords

Andes; autosomal noncoding sequence; HGDP CEPH; microsatellites; native American

Indexed keywords

MICROSATELLITE DNA;

EID: 84857234535     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.22013     Document Type: Article
Times cited : (11)

References (74)
  • 1
    • 77958134755 scopus 로고    scopus 로고
    • Ascertainment biases in SNP chips affect measures of population divergence
    • Albrechtsen A, Nielsen FC, Nielsen R,. 2010. Ascertainment biases in SNP chips affect measures of population divergence. Mol Biol Evol 27: 2534-2547.
    • (2010) Mol Biol Evol , vol.27 , pp. 2534-2547
    • Albrechtsen, A.1    Nielsen, F.C.2    Nielsen, R.3
  • 7
    • 56549108436 scopus 로고    scopus 로고
    • Genetic markers: How accurate can genetic data be?
    • Chikhi L,. 2008. Genetic markers: how accurate can genetic data be? Heredity 101: 471-472.
    • (2008) Heredity , vol.101 , pp. 471-472
    • Chikhi, L.1
  • 8
    • 79954590417 scopus 로고    scopus 로고
    • POLYSAT: An R package for polyploid microsatellite analysis
    • Clark LV, Jasieniuk M,. 2011. POLYSAT: an R package for polyploid microsatellite analysis. Mol Ecol Resour 11: 562-566.
    • (2011) Mol Ecol Resour , vol.11 , pp. 562-566
    • Clark, L.V.1    Jasieniuk, M.2
  • 9
    • 10744225837 scopus 로고    scopus 로고
    • Mexican American ancestry-informative markers: Examination of population structure and marker characteristics in European Americans, Mexican Americans, Amerindians and Asians
    • DOI 10.1007/s00439-003-1058-6
    • Collins-Schramm HE, Chima B, Morii T, Wah K, Figueroa Y, Criswell L, Hanson RL, Knowler WC, Silva G, Belmont JW, Seldin MF,. 2004. Mexican American ancestry-informative markers: examination of population structure and marker characteristics in European Americans, Mexican Americans, Amerindians and Asians. Hum Genet 114: 263-271. (Pubitemid 38208304)
    • (2004) Human Genetics , vol.114 , Issue.3 , pp. 263-271
    • Collins-Schramm, H.E.1    Chima, B.2    Morii, T.3    Wah, K.4    Figueroa, Y.5    Criswell, L.A.6    Hanson, R.L.7    Knowler, W.C.8    Silva, G.9    Belmont, J.W.10    Seldin, M.F.11
  • 10
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Consortium T1000 GP
    • Consortium T1000 GP. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 11
    • 33847208531 scopus 로고    scopus 로고
    • Mitochondrial DNA diversity of the Amerindian populations living in the Andean Piedmont of Bolivia: Chimane, Moseten, Aymara and Quechua
    • Corella A, Bert F, Pérez-Pérez A, Gené M, Turbón D,. 2007. Mitochondrial DNA diversity of the Amerindian populations living in the Andean Piedmont of Bolivia: Chimane, Moseten, Aymara and Quechua. Ann Hum Biol 34: 34-55.
    • (2007) Ann Hum Biol , vol.34 , pp. 34-55
    • Corella, A.1    Bert, F.2    Pérez-Pérez, A.3    Gené, M.4    Turbón, D.5
  • 12
    • 68249109483 scopus 로고    scopus 로고
    • Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations
    • Cox MP, Morales DA, Woerner AE, Sozanski J, Wall JD, Hammer MF,. 2009. Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations. PLoS One 4: e6366.
    • (2009) PLoS One , vol.4
    • Cox, M.P.1    Morales, D.A.2    Woerner, A.E.3    Sozanski, J.4    Wall, J.D.5    Hammer, M.F.6
  • 14
    • 0038818582 scopus 로고    scopus 로고
    • Comment on "genetic structure of human populations."
    • Excoffier L, Hamilton G,. 2003. Comment on "Genetic structure of human populations." Science 300: 1877.
    • (2003) Science , vol.300 , pp. 1877
    • Excoffier, L.1    Hamilton, G.2
  • 15
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL,. 2010. Arlequin suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567.
    • (2010) Mol Ecol Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 18
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK,. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587. (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 19
    • 0032970601 scopus 로고    scopus 로고
    • A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation [1]
    • Fay JC, Wu CI,. 1999. A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Mol Biol Evol 16: 1003-1005. (Pubitemid 29314179)
    • (1999) Molecular Biology and Evolution , vol.16 , Issue.7 , pp. 1003-1005
    • Fay, J.C.1    Wu, C.-I.2
  • 21
    • 62549085618 scopus 로고    scopus 로고
    • Human genetic variation and its contribution to complex traits
    • Frazer K, Murray SS, Schork NJ, Topol EJ,. 2009. Human genetic variation and its contribution to complex traits. Nat Rev Genet 10: 241-251.
    • (2009) Nat Rev Genet , vol.10 , pp. 241-251
    • Frazer, K.1    Murray, S.S.2    Schork, N.J.3    Topol, E.J.4
  • 22
    • 0034835229 scopus 로고    scopus 로고
    • Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
    • DOI 10.1086/323612
    • Frisse L, Hudson RR, Bartoszewicz, Wall JD, Donfack J, Di Rienzo,. 2001. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am J Hum Genet 69: 831-843. (Pubitemid 32868527)
    • (2001) American Journal of Human Genetics , vol.69 , Issue.4 , pp. 831-843
    • Frisse, L.1    Hudson, R.R.2    Bartoszewicz, A.3    Wall, J.D.4    Donfack, J.5    Di Rienzo, A.6
  • 25
    • 33747457749 scopus 로고    scopus 로고
    • Reconstructing human origins in the genomic era
    • DOI 10.1038/nrg1941, PII NRG1941
    • Garrigan D, Hammer MF,. 2006. Reconstructing human origins in the genomic era. Nature reviews. Genetics 7: 669-680. (Pubitemid 44260003)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.9 , pp. 669-680
    • Garrigan, D.1    Hammer, M.F.2
  • 26
    • 52149093840 scopus 로고    scopus 로고
    • The peopling of America: Craniofacial shape variation on a continental scale and its interpretation from an interdisciplinary view
    • González-José R, Bortolini MC, Santos FR, Bonatto SL,. 2008. The peopling of America: craniofacial shape variation on a continental scale and its interpretation from an interdisciplinary view. Am J Phys Anthropol 137: 175-187.
    • (2008) Am J Phys Anthropol , vol.137 , pp. 175-187
    • González-José, R.1    Bortolini, M.C.2    Santos, F.R.3    Bonatto, S.L.4
  • 28
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee SC, Urban DL,. 2007. The ecodist package for dissimilarity-based analysis of ecological data. J Stat Soft 22.
    • (2007) J Stat Soft , vol.22
    • Goslee, S.C.1    Urban, D.L.2
  • 29
    • 84873067792 scopus 로고    scopus 로고
    • Harrell FE,. 2010
    • Harrell FE,. 2010.
  • 31
    • 80855132602 scopus 로고    scopus 로고
    • The impact of founder effects, gene flow, and European admixture on Native American genetic diversity
    • Hunley K, Healy M,. 2011. The impact of founder effects, gene flow, and European admixture on Native American genetic diversity. Am J Phys Anthropol 1-9.
    • (2011) Am J Phys Anthropol , pp. 1-9
    • Hunley, K.1    Healy, M.2
  • 32
    • 44349095887 scopus 로고    scopus 로고
    • Adegenet: A R package for the multivariate analysis of genetic markers
    • DOI 10.1093/bioinformatics/btn129
    • Jombart T,. 2008. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24: 1403-1405. (Pubitemid 351737150)
    • (2008) Bioinformatics , vol.24 , Issue.11 , pp. 1403-1405
    • Jombart, T.1
  • 33
    • 39749159747 scopus 로고    scopus 로고
    • Native South American genetic structure and prehistory inferred from hierarchical modeling of mtDNA
    • DOI 10.1093/molbev/msm225
    • Lewis CM, Long JC,. 2008. Native South American genetic structure and prehistory inferred from hierarchical modeling of mtDNA. Mol Biol Evol 25: 478-486. (Pubitemid 351301903)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.3 , pp. 478-486
    • Lewis Jr., C.M.1    Long, J.C.2
  • 35
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J,. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 37
    • 80855139580 scopus 로고    scopus 로고
    • New developments in the origins and evolution of Native American populations
    • Long JC, Bortolini MC,. 2011. New developments in the origins and evolution of Native American populations. Am J Phys Anthropol 1-4.
    • (2011) Am J Phys Anthropol , pp. 1-4
    • Long, J.C.1    Bortolini, M.C.2
  • 38
    • 0033839434 scopus 로고    scopus 로고
    • Genetic structure of Quechua-speakers of the Central Andes and geographic patterns of gene frequencies in South Amerindian populations
    • Luiselli D, Simoni L, Tarazona-Santos E, Pastor S, Pettener D,. 2000. Genetic structure of Quechua-speakers of the Central Andes and geographic patterns of gene frequencies in South Amerindian populations. Am J Phys Anthropol 113: 5-17.
    • (2000) Am J Phys Anthropol , vol.113 , pp. 5-17
    • Luiselli, D.1    Simoni, L.2    Tarazona-Santos, E.3    Pastor, S.4    Pettener, D.5
  • 39
    • 0025082480 scopus 로고
    • The similarity index and DNA fingerprinting
    • Lynch M,. 1990. The similarity index and DNA fingerprinting. Mol Biol Evol 7: 478-484.
    • (1990) Mol Biol Evol , vol.7 , pp. 478-484
    • Lynch, M.1
  • 41
    • 0029984827 scopus 로고    scopus 로고
    • A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci
    • Michalakis Y, Excoffier L,. 1996. A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142: 1061-1064. (Pubitemid 26162549)
    • (1996) Genetics , vol.142 , Issue.3 , pp. 1061-1064
    • Michalakis, Y.1    Excoffier, L.2
  • 42
    • 0018158761 scopus 로고
    • The population structure of an Amerindian tribe, the Yanomama
    • Neel JV,. 1978. The population structure of an Amerindian tribe, the Yanomama. Annu Rev Genet 12: 365-413.
    • (1978) Annu Rev Genet , vol.12 , pp. 365-413
    • Neel, J.V.1
  • 46
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • DOI 10.1093/bioinformatics/btg412
    • Paradis E, Claude J, Strimmer K,. 2004. APE: analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289-290. (Pubitemid 38195693)
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 47
    • 0032192393 scopus 로고    scopus 로고
    • Surnames and genetic structure of a high-altitude Quechua community from the Ichu River Valley, Peruvian Central Andes, 1825-1914
    • Pettener D, Pastor S, Tarazona-Santos E,. 1998. Surnames and genetic structure of a high-altitude Quechua community from the Ichu River Valley, Peruvian Central Andes, 1825-1914. Hum Biol 70: 865-887. (Pubitemid 28514475)
    • (1998) Human Biology , vol.70 , Issue.5 , pp. 865-887
    • Pettener, D.1    Pastor, S.2    Tarazona-Santos, E.3
  • 48
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P,. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 53
    • 0015399638 scopus 로고
    • Serum proteins, hemoglobins, and erythrocyte enzymes of Brazilian Cayapo Indians
    • Salzano FM, Neel JV, Weitkamp LR, Woodall JP,. 1972. Serum proteins, hemoglobins, and erythrocyte enzymes of Brazilian Cayapo Indians. Hum Biol 44: 443-458.
    • (1972) Hum Biol , vol.44 , pp. 443-458
    • Salzano, F.M.1    Neel, J.V.2    Weitkamp, L.R.3    Woodall, J.P.4
  • 54
    • 0034143970 scopus 로고    scopus 로고
    • Admixture studies in Latin America: From the 20th to the 21st century
    • Sans M,. 2000. Admixture studies in Latin America: from the 20th to the 21st century. Hum Biol 72: 155-177. (Pubitemid 30132304)
    • (2000) Human Biology , vol.72 , Issue.1 , pp. 155-177
    • Sans, M.1
  • 56
    • 0026499341 scopus 로고
    • Matrix correlation analysis in anthropology and genetics
    • Smouse PE, Long JC,. 1992, Matrix correlation analysis in anthropology and genetics. Am J Phys Anthropol 35: 187-213.
    • (1992) Am J Phys Anthropol , vol.35 , pp. 187-213
    • Smouse, P.E.1    Long, J.C.2
  • 57
    • 0017395130 scopus 로고
    • Inbreeding estimation from population data: Models, procedures and implications
    • Spielman RS, Neel JY, Li FHF,. 1977. Inbreeding estimation from population data: models, procedures, and implications. Genetics 85: 355-371. (Pubitemid 8103281)
    • (1977) Genetics , vol.85 , Issue.2 , pp. 355-371
    • Speilman, R.S.1    Neel, J.V.2    Li, F.H.F.3
  • 58
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F,. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460. (Pubitemid 14247444)
    • (1983) Genetics , vol.105 , Issue.2 , pp. 437-460
    • Tajima, F.1
  • 59
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F,. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. (Pubitemid 19274682)
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 61
    • 84873063213 scopus 로고    scopus 로고
    • U.S. Census Bureau 2005-2009
    • U.S. Census Bureau 2005-2009.
  • 63
    • 48949097653 scopus 로고    scopus 로고
    • A novel DNA sequence database for analyzing human demographic history
    • Wall JD, Cox MP, Mendez FL,. 2008. A novel DNA sequence database for analyzing human demographic history. Genome Res 18: 1354-1361.
    • (2008) Genome Res , vol.18 , pp. 1354-1361
    • Wall, J.D.1    Cox, M.P.2    Mendez, F.L.3
  • 67
    • 0014844493 scopus 로고
    • Gene frequencies and microdifferentiation among the Makiritare Indians. IV. A comparison of a genetic network with ethnohistory and migration matrices; A new Index of Genetic Isolation
    • Ward RH, Neel JV,. 1970. Gene frequencies and microdifferentiation among the Makiritare Indians. IV. A comparison of a genetic network with ethnohistory and migration matrices; a new Index of Genetic Isolation. Am J Hum Genet 22: 538-561.
    • (1970) Am J Hum Genet , vol.22 , pp. 538-561
    • Ward, R.H.1    Neel, J.V.2
  • 68
    • 11144229680 scopus 로고    scopus 로고
    • The genetics package: Population genetics
    • Warnes GR, Gorjanc G, Leisch F MM,. 2003. The genetics package: population genetics. R News 3: 9-13.
    • (2003) R News , vol.3 , pp. 9-13
    • Warnes, G.R.1    Gorjanc, G.2    Leisch, F.M.3
  • 69
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA,. 1975. On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7: 256-276.
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 70
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC,. 1984. Estimating F-statistics for the analysis of population structure. Soc Stud Evol 38: 1358-1370. (Pubitemid 16277759)
    • (1984) Evolution , vol.38 , Issue.6 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2


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