Isolating Microsatellite Loci: Looking Back, Looking Ahead

Methods in Molecular Biology

Volumn 772, Issue , 2011, Pages 211-232

  Andrés, José A ^a   Bogdanowicz, Steven M ^b  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

Cloning; Genotyping; Microsatellite; Next generation sequencing; SSR

Indexed keywords

DNA; MICROSATELLITE DNA; PRIMER DNA;

ARTICLE; DNA SEQUENCE; GENE LOCUS; GENETICS; GENOME; GENOTYPING TECHNIQUE; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR BIOLOGY; MOLECULAR CLONING; MULTIPLEX POLYMERASE CHAIN REACTION; PLASMID; REPRODUCIBILITY; STATISTICS;

CLONING, MOLECULAR; DNA; DNA PRIMERS; GENETIC LOCI; GENOME; GENOTYPING TECHNIQUES; MICROSATELLITE REPEATS; MOLECULAR BIOLOGY; MULTIPLEX POLYMERASE CHAIN REACTION; PLASMIDS; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; STATISTICS AS TOPIC;

EID: 84857225391     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-228-1_12     Document Type: Chapter

References (16)

1. Yinglei L and Fengzhu S (2003) The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol 20:2123–2131
2. Kauer MO, Dieringer D, and Schlötterer C (2003) A microsatellite variability screen for positive selection associated with the “out of Africa” habitat expansion of Drosophila melanogaster. Genetics 165:1137–1148
3. Oda S, Maehara Y, Ikeda Y et al (2005) Two modes of microsatellite instability in human cancer: differential connection of defective DNA mismatch repair to dinucleotide repeat instability. Nucleic Acids Research 33:1628–1636
4. Vinces MD, Legendre M, Caldara M et al (2009) Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324:1213–1216
5. Weber JL and Wong C (1993) Mutation of human short tandem repeats. Hum Mol Genet 2:1123–1128
6. Primmer CR, Saino N, Møller AP et al (1996) Directional evolution in germline microsatellite mutations. Nat Genet 13:391–393
7. Wierdl M, Dominska M, Petes TD (1997) Microsatellite instability in yeast: dependence on the length of the microsatellite. Genetics 146:769–779
8. Schlötterer C (2000) Evolutionary dynamics of microsatellite DNA. Chromosoma 109:365–371
9. Hamilton MB, Pincu EL, Fiore AD et al (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques 27:500–507
10. Abdelkrim J, Robertson BC, Stanton J-AL, et al (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques 46:185–192
11. Allentoft ME, Schuster SC, Holdaway RN et al (2008) Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. BioTechniques 46:195–200
12. Castoe TA, Poole AW, Gu W et al (2009) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour 10:341–347
13. Csencsics D, Brodbeck S, Holderegger R (2010) Cost-effective, species-specific microsatellite development for the endangered Dwarf Bulrush (Typha minima) using next-generation sequencing technology. J Hered 101: 789–793
14. Santana QC, Coetzee MPA, Steenkamp ET et al (2009) Microsatellite discovery by deep sequencing of enriched genomic libraries. BioTechniques 46:217–223
15. Brownstein MJ, Carpten D, Smith JR (1996) Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques 20:1004–1010
16. Schuelke, M (2000) An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology 18:233–234