메뉴 건너뛰기




Volumn 5, Issue 3, 2011, Pages 389-397

High quality draft genome sequence of Segniliparus rugosus CDC 945 T= (ATCC BAA-974 T)

Author keywords

Genome sequencing; Human microbiome project; Segniliparaceae

Indexed keywords

MAMMALIA; SEGNILIPARACEAE; SEGNILIPARUS; SEGNILIPARUS RUGOSUS;

EID: 84857099161     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.2255041     Document Type: Article
Times cited : (6)

References (31)
  • 1
    • 22544456002 scopus 로고    scopus 로고
    • Novel mycolic acid-containing bacteria in the family Segniliparaceae fam.nov., including the genus Segniliparus gen.nov., with descriptions of Segniliparus rotundus sp.nov.and Segniliparus rugosus sp.nov
    • PubMed doi:10.1099/ijs.0.63465-0
    • Butler WR, Floyd MM, Brown JM, Toney SR, Da-neshvar MI, Cooksey RC, Carr J, Steigerwalt AG, Charles N. Novel mycolic acid-containing bacteria in the family Segniliparaceae fam.nov., including the genus Segniliparus gen.nov., with descriptions of Segniliparus rotundus sp.nov.and Segniliparus rugosus sp.nov. Int J Syst Evol Mi-crobiol 2005; 55:1615-1624. PubMed doi:10.1099/ijs.0.63465-0
    • (2005) Int J Syst Evol Mi-crobiol , vol.55 , pp. 1615-1624
    • Butler, W.R.1    Floyd, M.M.2    Brown, J.M.3    Toney, S.R.4    Da-Neshvar, M.I.5    Cooksey, R.C.6    Carr, J.7    Steigerwalt, A.G.8    Charles, N.9
  • 2
    • 0034768463 scopus 로고    scopus 로고
    • Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species
    • PubMed doi:10.1128/CMR.14.4.704-726.2001
    • Butler WR, Guthertz LS. Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species. Clin Mi-crobiol Rev 2001; 14:704-726. PubMed doi:10.1128/CMR.14.4.704-726.2001
    • (2001) Clin Mi-crobiol Rev , vol.14 , pp. 704-726
    • Butler, W.R.1    Guthertz, L.S.2
  • 5
    • 79551632120 scopus 로고    scopus 로고
    • Segniliparus rugosus-associated bron-chiolitis in California sea lion
    • PubMed
    • Evans RH. Segniliparus rugosus-associated bron-chiolitis in California sea lion. Emerg Infect Dis 2011; 17:311-312. PubMed
    • (2011) Emerg Infect Dis , vol.17 , pp. 311-312
    • Evans, R.H.1
  • 7
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 54QHX07WB5K5XCX4 [pii]
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003;52:696-704. 54QHX07WB5K5XCX4 [pii]
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 8
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • PubMed doi:10.1093/nar/22.22.4673
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673-4680. PubMed doi:10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 9
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • PubMed doi:10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596-1599. PubMed doi:10.1093/molbev/msm092
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 11
    • 77956884098 scopus 로고    scopus 로고
    • Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses
    • ubMed doi:10.1016/j.syapm.2010.08.001
    • Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Mi-crobiol 2010; 33:291-299. PubMed doi:10.1016/j.syapm.2010.08.001
    • (2010) Syst Appl Mi-crobiol , vol.33 , pp. 291-299
    • Yarza, P.1    Ludwig, W.2    Euzeby, J.3    Amann, R.4    Schleifer, K.H.5    Glockner, F.O.6    Rossello-Mora, R.7
  • 15
    • 84857076836 scopus 로고    scopus 로고
    • The Broad Institute
    • The Broad Institute. http://www.broadinstitute.org.
  • 16
    • 0035135567 scopus 로고    scopus 로고
    • DNA isolation from chloroform/methanol-treated my-cobacterial cells without lysozyme and proteinase K
    • PubMed
    • Mve-Obiang A, Mestdagh M, Portaels F. DNA isolation from chloroform/methanol-treated my-cobacterial cells without lysozyme and proteinase K. Biotechniques 2001; 30:272-274, 276. PubMed
    • (2001) Biotechniques , vol.276 , Issue.30 , pp. 272-274
    • Mve-Obiang, A.1    Mestdagh, M.2    Portaels, F.3
  • 18
    • 0000241874 scopus 로고
    • GENMARK: Parallel gene recognition for both DNA strands
    • doi:10.1016/0097-8485(93)85004-V
    • Borodovsky M, McIninch J. GENMARK: Parallel gene recognition for both DNA strands. Comput Chem 1993; 17:123-133. doi:10.1016/0097-8485(93)85004-V
    • (1993) Comput Chem , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 19
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • PubMed doi:10.1093/nar/27.23.4636
    • Delcher AL, Harmon D, Kasif S, White O, Salz-berg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999; 27:4636-4641. PubMed doi:10.1093/nar/27.23.4636
    • (1999) Nucleic Acids Res , vol.27 , pp. 4636-4641
    • Delcher, A.L.1    Harmon, D.2    Kasif, S.3    White, O.4    Salz-Berg, S.L.5
  • 20
    • 33750976398 scopus 로고    scopus 로고
    • MetaGene: Proka-ryotic gene finding from environmental genome shotgun sequences
    • PubMed doi:10.1093/nar/gkl723
    • Noguchi H, Park J, Takagi T. MetaGene: proka-ryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res 2006; 34:5623-5630. PubMed doi:10.1093/nar/gkl723
    • (2006) Nucleic Acids Res , vol.34 , pp. 5623-5630
    • Noguchi, H.1    Park, J.2    Takagi, T.3
  • 22
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in ge-nomic sequence
    • PubMed doi:10.1093/nar/25.5.955
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in ge-nomic sequence. Nucleic Acids Res 1997; 25:955-964. PubMed doi:10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 84857080959 scopus 로고    scopus 로고
    • The Broad Institute. Automated gene naming tool
    • The Broad Institute. Automated gene naming tool. http://genepidgin.sourceforge.net.
  • 26
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • PubMed doi:10.1073/pnas.87.12.4576
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed doi:10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 27
    • 0000685441 scopus 로고    scopus 로고
    • The Road Map to the Manual
    • In Garrity GM, Boone DR, Castenholz, RW. (eds), Second edition. New York: Springer
    • Garrity GM, Holt JG. The Road Map to the Manual. In Garrity GM, Boone DR, Castenholz, RW. (eds). Bergey's Manual of Systematic Bacteriology, Second edition. New York: Springer; 2001. p 119 -169.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 119-169
    • Garrity, G.M.1    Holt, J.G.2
  • 28
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a New Hierarchic Classification System, Actinobacteria classic nov
    • doi:10.1099/00207713-47-2-479
    • Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a New Hierarchic Classification System, Actinobacteria classic nov. Int J Syst Bacte-riol 1997; 47:479-491. doi:10.1099/00207713-47-2-479
    • (1997) Int J Syst Bacte-riol , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 29
    • 67651165968 scopus 로고    scopus 로고
    • An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacte-ria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa
    • PubMed doi:10.1099/ijs.0.65780-0
    • Zhi XY, Li WJ, Stackebrandt E. An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacte-ria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 2009; 59:589-608. PubMed doi:10.1099/ijs.0.65780-0
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 589-608
    • Zhi, X.Y.1    Li, W.J.2    Stackebrandt, E.3
  • 30
    • 34249313614 scopus 로고    scopus 로고
    • 5th ed. rev. Dec. 2009 ed. Washington D.C.: US Department of Health and Human Services, Public Health Service, Centers for Disease Control and Prevention, National Institute of Health, pnas.050566797. 8. Ironside JW and JE Bell
    • Chosewood L, Wilson D, eds. Biosafety in Microbiological and Biomedical Laboratories (BMBL). 5th ed. rev. Dec. 2009 ed. Washington D.C.: US Department of Health and Human Services, Public Health Service, Centers for Disease Control and Prevention, National Institute of Health; 2009. pnas.050566797. 8. Ironside JW and JE Bell.
    • (2009) Biosafety In Microbiological and Biomedical Laboratories (BMBL)
    • Chosewood, L.1    Wilson, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.