-
1
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: opportunities and challenges
-
Barbazuk WB, Fu Y, McGinnis KM (2008) Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res 18: 1381-1392.
-
(2008)
Genome Res
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
2
-
-
58149182724
-
NCBI GEO: archive for high-throughput functional genomic data
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R (2009) NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 37: D885-D890.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Marshall, K.A.10
Phillippy, K.H.11
Sherman, P.M.12
Muertter, R.N.13
Edgar, R.14
-
3
-
-
65649154085
-
Plant-microbe interactions: chemical diversity in plant defense
-
Bednarek P, Osbourn A (2009) Plant-microbe interactions: chemical diversity in plant defense. Science 324: 746-748.
-
(2009)
Science
, vol.324
, pp. 746-748
-
-
Bednarek, P.1
Osbourn, A.2
-
4
-
-
0000295679
-
The myrosinase-glucosinolate system, its organisation and biochemistry
-
Bones AM, Rossiter JT (1996) The myrosinase-glucosinolate system, its organisation and biochemistry. Physiol Plant 97: 194-208.
-
(1996)
Physiol Plant
, vol.97
, pp. 194-208
-
-
Bones, A.M.1
Rossiter, J.T.2
-
5
-
-
0034928217
-
Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants
-
Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Gorlach J (2001) Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13: 1499-1510.
-
(2001)
Plant Cell
, vol.13
, pp. 1499-1510
-
-
Boyes, D.C.1
Zayed, A.M.2
Ascenzi, R.3
McCaskill, A.J.4
Hoffman, N.E.5
Davis, K.R.6
Gorlach, J.7
-
6
-
-
0037311116
-
Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana
-
Brown PD, Tokuhisa JG, Reichelt M, Gershenzon J (2003) Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana. Phytochemistry 62: 471-481.
-
(2003)
Phytochemistry
, vol.62
, pp. 471-481
-
-
Brown, P.D.1
Tokuhisa, J.G.2
Reichelt, M.3
Gershenzon, J.4
-
7
-
-
33751078288
-
Altered glucosinolate hydrolysis in genetically engineered Arabidopsis thaliana and its influence on the larval development of Spodoptera littoralis
-
Burow M, Muller R, Gershenzon J, Wittstock U (2006) Altered glucosinolate hydrolysis in genetically engineered Arabidopsis thaliana and its influence on the larval development of Spodoptera littoralis. J Chem Ecol 32: 2333-2349.
-
(2006)
J Chem Ecol
, vol.32
, pp. 2333-2349
-
-
Burow, M.1
Muller, R.2
Gershenzon, J.3
Wittstock, U.4
-
8
-
-
33845608615
-
Glucosinolate hydrolysis in Lepidium sativum-identification of the thiocyanate-forming protein
-
Burow M, Bergner A, Gershenzon J, Wittstock U (2007a) Glucosinolate hydrolysis in Lepidium sativum-identification of the thiocyanate-forming protein. Plant Mol Biol 63: 49-61.
-
(2007)
Plant Mol Biol
, vol.63
, pp. 49-61
-
-
Burow, M.1
Bergner, A.2
Gershenzon, J.3
Wittstock, U.4
-
9
-
-
34247254458
-
Cell- and tissue-specific localization and regulation of the epithiospecifier protein in Arabidopsis thaliana
-
Burow M, Rice M, Hause B, Gershenzon J, Wittstock U (2007b) Cell- and tissue-specific localization and regulation of the epithiospecifier protein in Arabidopsis thaliana. Plant Mol Biol 64: 173-185.
-
(2007)
Plant Mol Biol
, vol.64
, pp. 173-185
-
-
Burow, M.1
Rice, M.2
Hause, B.3
Gershenzon, J.4
Wittstock, U.5
-
10
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
11
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139: 5-17.
-
(2005)
Plant Physiol
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.R.5
-
12
-
-
38349052346
-
A proteomics study of brassinosteroid response in Arabidopsis
-
Deng Z, Zhang X, Tang W, Oses-Prieto JA, Suzuki N, Gendron JM, Chen H, Guan S, Chalkley RJ, Peterman TK, Burlingame AL, Wang ZY (2007) A proteomics study of brassinosteroid response in Arabidopsis. Mol Cell Proteomics 6: 2058-2071.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 2058-2071
-
-
Deng, Z.1
Zhang, X.2
Tang, W.3
Oses-Prieto, J.A.4
Suzuki, N.5
Gendron, J.M.6
Chen, H.7
Guan, S.8
Chalkley, R.J.9
Peterman, T.K.10
Burlingame, A.L.11
Wang, Z.Y.12
-
13
-
-
34548337297
-
MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis
-
Dombrecht B, Xue GP, Sprague SJ, Kirkegaard JA, Ross JJ, Reid JB, Fitt GP, Sewelam N, Schenk PM, Manners JM, Kazan K (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-2245.
-
(2007)
Plant Cell
, vol.19
, pp. 2225-2245
-
-
Dombrecht, B.1
Xue, G.P.2
Sprague, S.J.3
Kirkegaard, J.A.4
Ross, J.J.5
Reid, J.B.6
Fitt, G.P.7
Sewelam, N.8
Schenk, P.M.9
Manners, J.M.10
Kazan, K.11
-
14
-
-
33644872218
-
Gateway-compatible vectors for plant functional genomics and proteomics
-
Earley KW, Haag JR, Pontes O, Opper K, Juehne T, Song K, Pikaard CS (2006) Gateway-compatible vectors for plant functional genomics and proteomics. Plant J 45: 616-629.
-
(2006)
Plant J
, vol.45
, pp. 616-629
-
-
Earley, K.W.1
Haag, J.R.2
Pontes, O.3
Opper, K.4
Juehne, T.5
Song, K.6
Pikaard, C.S.7
-
15
-
-
0035808553
-
The chemical diversity and distribution of glucosinolates and isothiocyanates among plants
-
Fahey JW, Zalcmann AT, Talalay P (2001) The chemical diversity and distribution of glucosinolates and isothiocyanates among plants. Phytochemistry 56: 5-51.
-
(2001)
Phytochemistry
, vol.56
, pp. 5-51
-
-
Fahey, J.W.1
Zalcmann, A.T.2
Talalay, P.3
-
16
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin SA, Priest HD, Givan SA, Shen RK, Bryant DW, Fox SE, Wong WK, Mockler TC (2010) Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res 20: 45-58.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.K.4
Bryant, D.W.5
Fox, S.E.6
Wong, W.K.7
Mockler, T.C.8
-
17
-
-
33747088854
-
Genevestigator. Facilitating web-based gene-expression analysis
-
Grennan AK (2006) Genevestigator. Facilitating web-based gene-expression analysis. Plant Physiol 141: 1164-1166.
-
(2006)
Plant Physiol
, vol.141
, pp. 1164-1166
-
-
Grennan, A.K.1
-
18
-
-
60549091080
-
Role of glucosinolates in insect-plant relationships and multitrophic interactions
-
Hopkins RJ, van Dam NM, van Loon JJA (2009) Role of glucosinolates in insect-plant relationships and multitrophic interactions. Annu Rev Entomol 54: 57-83.
-
(2009)
Annu Rev Entomol
, vol.54
, pp. 57-83
-
-
Hopkins, R.J.1
van Dam, N.M.2
van Loon, J.J.A.3
-
19
-
-
58149350422
-
Physiological effects of broccoli consumption
-
Jeffery EH, Araya M (2009) Physiological effects of broccoli consumption. Phytochem Rev 8: 283-298.
-
(2009)
Phytochem Rev
, vol.8
, pp. 283-298
-
-
Jeffery, E.H.1
Araya, M.2
-
20
-
-
29944433137
-
Expression profiling of metabolic genes in response to methyl jasmonate reveals regulation of genes of primary and secondary sulfur-related pathways in Arabidopsis thaliana
-
Jost R, Altschmied L, Bloem E, Bogs J, Gershenzon J, Hahnel U, Hansch R, Hartmann T, Kopriva S, Kruse C, Mendel RR, Papenbrock J, Reichelt M, Rennenberg H, Schnug E, Schmidt A, Textor S, Tokuhisa J, Wachter A, Wirtz M, Rausch T, Hell R (2005) Expression profiling of metabolic genes in response to methyl jasmonate reveals regulation of genes of primary and secondary sulfur-related pathways in Arabidopsis thaliana. Photosynth Res 86: 491-508.
-
(2005)
Photosynth Res
, vol.86
, pp. 491-508
-
-
Jost, R.1
Altschmied, L.2
Bloem, E.3
Bogs, J.4
Gershenzon, J.5
Hahnel, U.6
Hansch, R.7
Hartmann, T.8
Kopriva, S.9
Kruse, C.10
Mendel, R.R.11
Papenbrock, J.12
Reichelt, M.13
Rennenberg, H.14
Schnug, E.15
Schmidt, A.16
Textor, S.17
Tokuhisa, J.18
Wachter, A.19
Wirtz, M.20
Rausch, T.21
Hell, R.22
more..
-
21
-
-
66449108674
-
Nitrile-specifier proteins involved in glucosinolate hydrolysis in Arabidopsis thaliana
-
Kissen R, Bones AM (2009) Nitrile-specifier proteins involved in glucosinolate hydrolysis in Arabidopsis thaliana. J Biol Chem 284: 12057-12070.
-
(2009)
J Biol Chem
, vol.284
, pp. 12057-12070
-
-
Kissen, R.1
Bones, A.M.2
-
22
-
-
0034984477
-
Genetic control of natural variation in Arabidopsis glucosinolate accumulation
-
Kliebenstein DJ, Kroymann J, Brown P, Figuth A, Pedersen D, Gershenzon J, Mitchell-Olds T (2001) Genetic control of natural variation in Arabidopsis glucosinolate accumulation. Plant Physiol 126: 811-825.
-
(2001)
Plant Physiol
, vol.126
, pp. 811-825
-
-
Kliebenstein, D.J.1
Kroymann, J.2
Brown, P.3
Figuth, A.4
Pedersen, D.5
Gershenzon, J.6
Mitchell-Olds, T.7
-
23
-
-
0035542786
-
The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory
-
Lambrix V, Reichelt M, Mitchell-Olds T, Kliebenstein DJ, Gershenzon J (2001) The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory. Plant Cell 13: 2793-2807.
-
(2001)
Plant Cell
, vol.13
, pp. 2793-2807
-
-
Lambrix, V.1
Reichelt, M.2
Mitchell-Olds, T.3
Kliebenstein, D.J.4
Gershenzon, J.5
-
24
-
-
0041694048
-
Microarray and differential display identify genes involved in jasmonate-dependent anther development
-
Mandaokar A, Kumar VD, Amway M, Browse J (2003) Microarray and differential display identify genes involved in jasmonate-dependent anther development. Plant Mol Biol 52: 775-786.
-
(2003)
Plant Mol Biol
, vol.52
, pp. 775-786
-
-
Mandaokar, A.1
Kumar, V.D.2
Amway, M.3
Browse, J.4
-
25
-
-
34250770129
-
The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium
-
Miao Y, Zentgraf U (2007) The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium. Plant Cell 19: 819-830.
-
(2007)
Plant Cell
, vol.19
, pp. 819-830
-
-
Miao, Y.1
Zentgraf, U.2
-
26
-
-
53649104440
-
Formation of simple nitriles upon glucosinolate hydrolysis affects direct and indirect defense against the specialist herbivore, Pieris rapae
-
Mumm R, Burow M, Bukovinszkine'kiss G, Kazantzidou E, Wittstock U, Dicke M, Gershenzon J (2008) Formation of simple nitriles upon glucosinolate hydrolysis affects direct and indirect defense against the specialist herbivore, Pieris rapae. J Chem Ecol 34: 1311-1321.
-
(2008)
J Chem Ecol
, vol.34
, pp. 1311-1321
-
-
Mumm, R.1
Burow, M.2
Bukovinszkine'kiss, G.3
Kazantzidou, E.4
Wittstock, U.5
Dicke, M.6
Gershenzon, J.7
-
27
-
-
0036483662
-
Composition and content of glucosinolates in developing Arabidopsis thaliana
-
Petersen BL, Chen SX, Hansen CH, Olsen CE, Halkier BA (2002) Composition and content of glucosinolates in developing Arabidopsis thaliana. Planta 214: 562-571.
-
(2002)
Planta
, vol.214
, pp. 562-571
-
-
Petersen, B.L.1
Chen, S.X.2
Hansen, C.H.3
Olsen, C.E.4
Halkier, B.A.5
-
28
-
-
0036581160
-
Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
-
Pfaffl MW, Horgan GW, Dempfle L (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30: e36.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Pfaffl, M.W.1
Horgan, G.W.2
Dempfle, L.3
-
29
-
-
53649087521
-
Comparative innate responses of the aphid parasitoid Diaeretiella rapae to alkenyl glucosinolate derived isothiocyanates, nitriles, and epithionitriles
-
Pope TW, Kissen R, Grant M, Pickett JA, Rossiter JT, Powell G (2008) Comparative innate responses of the aphid parasitoid Diaeretiella rapae to alkenyl glucosinolate derived isothiocyanates, nitriles, and epithionitriles. J Chem Ecol 34: 1302-1310.
-
(2008)
J Chem Ecol
, vol.34
, pp. 1302-1310
-
-
Pope, T.W.1
Kissen, R.2
Grant, M.3
Pickett, J.A.4
Rossiter, J.T.5
Powell, G.6
-
30
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
Ramakers C, Ruijter JM, Deprez RH, Moorman AF (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66.
-
(2003)
Neurosci Lett
, vol.339
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.3
Moorman, A.F.4
-
31
-
-
34250813107
-
Alternative splicing of pre-messenger RNAs in plants in the genomic era
-
Reddy AS (2007) Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol 58: 267-294.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 267-294
-
-
Reddy, A.S.1
-
32
-
-
0037085616
-
Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana
-
Reichelt M, Brown PD, Schneider B, Oldham NJ, Stauber E, Tokuhisa J, Kliebenstein DJ, Mitchell-Olds T, Gershenzon J (2002) Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana. Phytochemistry 59: 663-671.
-
(2002)
Phytochemistry
, vol.59
, pp. 663-671
-
-
Reichelt, M.1
Brown, P.D.2
Schneider, B.3
Oldham, N.J.4
Stauber, E.5
Tokuhisa, J.6
Kliebenstein, D.J.7
Mitchell-Olds, T.8
Gershenzon, J.9
-
33
-
-
51149120433
-
Intron-mediated regulation of gene expression
-
Rose AB (2008) Intron-mediated regulation of gene expression. Curr Top Microbiol Immunol 326: 277-290.
-
(2008)
Curr Top Microbiol Immunol
, vol.326
, pp. 277-290
-
-
Rose, A.B.1
-
34
-
-
64549150047
-
Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data
-
Ruijter JM, Ramakers C, Hoogaars WM, Karlen Y, Bakker O, van den Hoff MJ, Moorman AF (2009) Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data. Nucleic Acids Res 37: e45.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Ruijter, J.M.1
Ramakers, C.2
Hoogaars, W.M.3
Karlen, Y.4
Bakker, O.5
van den Hoff, M.J.6
Moorman, A.F.7
-
36
-
-
51149117840
-
Splice site requirements and switches in plants
-
Schuler MA (2008) Splice site requirements and switches in plants. Curr Top Microbiol Immunol 326: 39-59.
-
(2008)
Curr Top Microbiol Immunol
, vol.326
, pp. 39-59
-
-
Schuler, M.A.1
-
37
-
-
84985332632
-
Gas chromatography-mass spectrometry of nitriles, isothiocyanates and oxazolidinethiones derived from cruciferous glucosinolates
-
Spencer GF, Daxenbichler ME (1980) Gas chromatography-mass spectrometry of nitriles, isothiocyanates and oxazolidinethiones derived from cruciferous glucosinolates. J Sci Food Agric 31: 359-367.
-
(1980)
J Sci Food Agric
, vol.31
, pp. 359-367
-
-
Spencer, G.F.1
Daxenbichler, M.E.2
-
38
-
-
12344250822
-
Function of alternative splicing
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H (2005) Function of alternative splicing. Gene 344: 1-20.
-
(2005)
Gene
, vol.344
, pp. 1-20
-
-
Stamm, S.1
Ben-Ari, S.2
Rafalska, I.3
Tang, Y.4
Zhang, Z.5
Toiber, D.6
Thanaraj, T.A.7
Soreq, H.8
-
39
-
-
38549144806
-
The Arabidopsis information resource (TAIR): gene structure and function annotation
-
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E (2008) The Arabidopsis information resource (TAIR): gene structure and function annotation. Nucleic Acids Res 36: D1009-D1014.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
40
-
-
58149327483
-
Glucosinolates, isothiocyanates and human health
-
Traka M, Mithen R (2009) Glucosinolates, isothiocyanates and human health. Phytochem Rev 8: 269-282.
-
(2009)
Phytochem Rev
, vol.8
, pp. 269-282
-
-
Traka, M.1
Mithen, R.2
-
41
-
-
68249140383
-
The 1001 genomes project for Arabidopsis thaliana
-
Weigel D, Mott R (2009) The 1001 genomes project for Arabidopsis thaliana. Genome Biol 10: 107.
-
(2009)
Genome Biol
, vol.10
, pp. 107
-
-
Weigel, D.1
Mott, R.2
-
42
-
-
79960709179
-
Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance
-
Wittstock U, Burow M (2010) Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance. Arabidopsis Book 8: e0134.
-
(2010)
Arabidopsis Book
, vol.8
-
-
Wittstock, U.1
Burow, M.2
-
43
-
-
35348834168
-
Regulation of plant glucosinolate metabolism
-
Yan XF, Chen SX (2007) Regulation of plant glucosinolate metabolism. Planta 226: 1343-1352.
-
(2007)
Planta
, vol.226
, pp. 1343-1352
-
-
Yan, X.F.1
Chen, S.X.2
-
44
-
-
17444425291
-
Characterisation of recombinant epithiospecifier protein and its over-expression in Arabidopsis thaliana
-
Zabala MD, Grant M, Bones AM, Bennett R, Lim YS, Kissen R, Rossiter JT (2005) Characterisation of recombinant epithiospecifier protein and its over-expression in Arabidopsis thaliana. Phytochemistry 66: 859-867.
-
(2005)
Phytochemistry
, vol.66
, pp. 859-867
-
-
Zabala, M.D.1
Grant, M.2
Bones, A.M.3
Bennett, R.4
Lim, Y.S.5
Kissen, R.6
Rossiter, J.T.7
-
45
-
-
33745464631
-
The gene controlling the quantitative trait locus EPITHIOSPECIFIER MODIFIER1 alters glucosinolate hydrolysis and insect resistance in Arabidopsis
-
Zhang ZY, Ober JA, Kliebenstein DJ (2006) The gene controlling the quantitative trait locus EPITHIOSPECIFIER MODIFIER1 alters glucosinolate hydrolysis and insect resistance in Arabidopsis. Plant Cell 18: 1524-1536.
-
(2006)
Plant Cell
, vol.18
, pp. 1524-1536
-
-
Zhang, Z.Y.1
Ober, J.A.2
Kliebenstein, D.J.3
|