Geomycology

Encyclopedia of Earth Sciences Series

Volumn , Issue 9781402092114, 2011, Pages 416-432

  Gadd, Geoffrey M ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84857031614     PISSN: 13884360     EISSN: 1871756X     Source Type: Book Series    
DOI: 10.1007/978-1-4020-9212-1_102     Document Type: Chapter

References (117)

1. Adeyemi, A. O., and Gadd, G. M., 2005. Fungal degradation of calcium-, lead- and silicon-bearing minerals. Biometals, 18, 269-281.
2. Arnott, H. J., 1995. Calcium oxalate in fungi. In Khan, S. R. (ed.), Calcium Oxalate in Biological Systems. Boca Raton: CRC, pp. 73-111.
3. Arocena, J. M., Glowa, K. R., Massicotte, H. B., and Lavkulich, L., 1999. Chemical and mineral composition of ectomycorrhi-zosphere soils of subalpine fir (Abies lasiocarpa (Hook.) Nutt.) in the AE horizon of a Luvisol. Canadian Journal of Soil Science, 79, 25-35.
4. Baldrian, P., 2003. Interactions of heavy metals with white-rot fungi. Enzyme and Microbial Technology, 32, 78-91.
5. Banfield, J. P., Barker, W. W., Welch, S. A., and Taunton, A., 1999. Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizo-sphere. Proceedings of the National Academy of Sciences of the United States of America, 96, 3404-3411.
6. Ban-nai, T., Muramatsu, Y., and Amachi, S., 2006. Rate of iodine volatilization and accumulation by filamentous fungi through laboratory cultures. Chemosphere, 65, 2216-2222.
7. Barker, W. W., and Banfield, J. F., 1998. Zones of chemical and physical interaction at interfaces between microbial communities and minerals: a model. Geomicrobiology Journal, 15, 223-244.
8. Boswell, G. P., Jacobs, H., Davidson, F. A., Gadd, G. M., and Ritz, K., 2002. Functional consequences of nutrient translocation in mycelial fungi. Journal of Theoretical Biology, 217, 459-477.
9. Boswell, G. P., Jacobs, H., Davidson, F. A., Gadd, G. M., andRitz, K., 2003. Growth and function of fungal mycelia in heterogeneous environments. Bulletin of Mathematical Biology, 65, 447-477.
10. Boswell, G. P., Jacobs, H., Ritz, K., Gadd, G. M., and Davidson, F. A., 2006. The development of fungal networks in complex environments. Bulletin of Mathematical Biology, 69, 605-634.
11. Bowen, A. D., Davidson, F. A., Keatch, R., and Gadd, G. M., 2007a. Effect of nutrient availability on hyphal maturation and topographical sensing in Aspergillus niger. Mycoscience, 48, 145-151.
12. Bowen, A. D., Davidson, F. A., Keatch, R., and Gadd, G. M., 2007b. Induction of contour sensing in Aspergillus niger by stress and its relevance to fungal growth mechanics and hyphal tip structure. Fungal Genetics and Biology, 44, 484-491.
13. Braissant, O., Cailleau, G., Aragno, M., and Verrecchia, E. P., 2004. Biologically induced mineralization in the tree Milicia excelsa (Moraceae): its causes and consequences to the environment. Geobiology, 2, 59-66.
14. Brandl, H., 2001. Heterotrophic leaching. In Gadd, G. M. (ed.), Fungi in Bioremediation. Cambridge: Cambridge University Press, pp. 383-423.
15. Bronick, C. J., and Lal, R., 2005. Soil structure and management: a review. Geoderma, 124, 3-22.
16. Burford, E. P., Kierans, M., and Gadd, G. M., 2003a. Geomycology: fungal growth in mineral substrata. Mycologist, 17, 98-107.
17. Burford, E. P., Fomina, M., and Gadd, G. M., 2003b. Fungal involvement in bioweathering and biotransformation of rocks and minerals. Mineralogical Magazine, 67, 1127-1155.
18. 3) and calcium oxalate mono- and dihydrate in carboniferous limestone microcosms. Geomicrobiology Journal, 23, 599-611.
19. Burgstaller, W., and Schinner, F., 1993. Leaching of metals with fungi. Journal of Biotechnology, 27, 91-116.
20. Butterfield, N. J., 2005. Probable proterozoic fungi. Palaeobiology, 31, 165-182.
21. Cemiglia, C. E., and Sutherland, J. B., 2001. Bioremediation of polycyclic aromatic hydrocarbons by ligninolytic and non-ligninolytic fungi. In Gadd, G. M. (ed.), Fungi in Bioremediation. Cambridge: Cambridge University Press, pp. 136-187.
22. Cemiglia, C. E., and Sutherland, J. B., 2006. Relative roles of bacteria and fungi in polycyclic aromatic hydrocarbon biodegradation and bioremediation of contaminated soils. In Gadd, G. M. (ed.), Fungi in Biogeochemical Cycles. Cambridge: Cambridge University Press, pp. 182-211.
23. Cotter-Howells, J. D., and Paterson, E., (2000). Minerals and soil development. In Vaughan, D. J., and Wogelius, R. A. (ed.), Environmental Mineralogy. Budapest: Eotvos University Press, pp. 91-124.
24. de la Torre, M. A., and Gomez-Alarcon, G., 1994. Manganese and iron oxidation by fungi isolated from building stone. Microbial Ecology, 27, 177-188.
25. de Rome, L., and Gadd, G. M., 1987. Copper adsorption by Rhizo-pus arrhizus, Cladosporium resinae and Penicillium italicum. Applied Microbiology and Biotechnology, 26, 84-90.
26. Easton, R. M., 1997. Lichen-rock-mineral interactions: an overview. In McIntosh, J. M., and Groat, L. A. (eds.), Biological-Mineralogical Interactions [Short Course Series, Vol. 21]. Ottawa: Mineralogical Association of Canada, pp. 209-239.
27. Ehrlich, H. L., 1998. Geomicrobiology: its significance for geology. Earth-Science Reviews, 45, 45-60.
28. Ehrlich, H. L., 2002. Geomicrobiology. New York: Marcel Dekker.
29. Fomina, M., and Gadd, G. M., 2002. Metal sorption by biomass of melanin-producing fungi grown in clay-containing medium. Journal of Chemical Technology and Biotechnology, 78, 23-34.
30. Fomina, M., and Gadd, G. M., 2007. Metal and mineral transformations: a mycorediation perspective. In Robson, G. D., van West, P., and Gadd, G. M. (eds.), Exploitation of Fungi. Cambridge: Cambridge University Press, pp. 236-254.
31. Fomina, M. A., Alexander, I. J., Hillier, S., and Gadd, G. M., 2004. Zinc phosphate and pyromorphite solubilization by soil plant-symbiotic fungi. Geomicrobiology Journal, 21, 351-366.
32. Fomina, M., Hillier, S., Charnock, J. M., Melville, K., Alexander, I. J., and Gadd, G. M., 2005a. Role of oxalic acid over-excretion in toxic metal mineral transformations by Beauveria caledonica. Applied and Environmental Microbiology, 71, 371-381.
33. Fomina, M., Burford, E. P., and Gadd, G. M., 2005b. Toxic metals and fungal communities. In Dighton, J., White, J. F., and Oudemans, P. (eds.), The Fungal Community: Its Organization and Role in the Ecosystem, 3rd edn. Boca Raton: CRC, pp. 733-758.
34. Fomina, M. A., Alexander, I. J., Colpaert, J. V., and Gadd, G. M., 2005c. Solubilization of toxic metal minerals and metal tolerance of mycorrhizal fungi. Soil Biology and Biochemistry, 37, 851-866.
35. Fomina, M., Burford, E. P., and Gadd, G. M., 2006a. Fungal dissolution and transformation of minerals: significance for nutrient and metal mobility. In Gadd, G. M. (ed.), Fungi in Biogeochemical Cycles. Cambridge: Cambridge University Press, pp. 236-266.
36. Fomina, M., Charnock, J. M., Hillier, S., Alexander, I. J., and Gadd, G. M., 2006b. Zinc phosphate transformations by the Paxillus involutus/pine ectomycorrhizal association. Microbial Ecology, 52, 526-534.
37. Fomina, M., Podgorsky, V. S., Olishevska, S. V., Kadoshnikov, V. M., Pisanska, I. R., Hillier, S., and Gadd, G. M., 2007a. Fungal deterioration of barrier concrete used in nuclear waste disposal. Geomicrobiology Journal, 24, 643-653.
38. Fomina, M., Charnock, J. M., Hillier, S., Alvarez, R., and Gadd, G. M., 2007b. Fungal transformations of uranium oxides. Environmental Microbiology, 9, 1696-1710.
39. Fomina, M., Charnock, J., Bowen, A. D., and Gadd, G. M., 2007c. X-ray absorption spectroscopy (XAS) of toxic metal mineral transformations by fungi. Environmental Microbiology, 9, 308-321.
40. Gadd, G. M., 1990. Fungi and yeasts for metal accumulation. In Ehrlich, H. L., and Brierley, C. (eds.), Microbial Mineral Recovery. New York: McGraw-Hill, pp. 249-275.
41. Gadd, G. M., 1992. Metals and microorganisms: a problem of definition. FEMS Microbiology Letters, 100, 197-204.
42. Gadd, G. M., 1993a. Interactions of fungi with toxic metals. New Phytologist, 124, 25-60.
43. Gadd, G. M., 1993b. Microbial formation and transformation of organometallic and organometalloid compounds. FEMS Microbiology Reviews, 11, 297-316.
44. Gadd, G. M., 1999. Fungal production of citric and oxalic acid: importance in metal speciation, physiology and biogeochemical processes. Advances in Microbial Physiology, 41, 47-92.
45. Gadd, G. M., 2000a. Microbial interactions with tributyltin compounds: detoxification, accumulation, and environmental fate. Science of the Total Environment, 258, 119-127.
46. Gadd, G. M., 2000b. Bioremedial potential of microbial mechanisms of metal mobilization and immobilization. Current Opinion in Biotechnology, 11, 271-279.
47. Gadd, G. M., 2000c. Heavy metal pollutants: environmental and biotechnological aspects. In Lederberg, J. (ed.), Encyclopedia of Microbiology. New York: Academic, pp. 607-617.
48. Gadd, G. M., (ed.), 2001a. Fungi in Bioremediation. Cambridge: Cambridge University Press.
49. Gadd, G. M., 2001b. Metal transformations. In Gadd, G. M. (ed.) Fungi in Bioremediation. Cambridge: Cambridge University Press, pp. 359-382.
50. Gadd, G. M., 2001c. Accumulation and transformation of metals by microorganisms. In Rehm, H.-J., Reed, G., Puhler, A., and Stadler, P. (eds.), Biotechnology, a Multi-Volume Comprehensive Treatise. Vol. 10. Special Processes. Weinheim: Wiley-VCH, pp. 225-264.
51. Gadd, G. M., 2004a. Mycotransformation of organic and inorganic substrates. Mycologist, 18, 60-70.
52. Gadd, G. M., 2004b. Microbial influence on metal mobility and application for bioremediation. Geoderma, 122, 109-119.
53. Gadd, G. M., 2005. Microorganisms in toxic metal polluted soils. In Buscot, F., and Varma, A. (eds.), Microorganisms in Soils: Roles in Genesis and Functions. Berlin: Springer, pp. 325-356.
54. Gadd, G. M., (ed.), 2006. Fungi in Biogeochemical Cycles. Cambridge: Cambridge University Press.
55. Gadd, G. M., 2007a. Geomycology: biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycological Research, 111, 3-49.
56. Gadd, G. M., 2007b. Fungi and industrial pollutants. In Kubicek, C. P., and Druzhinina, I. S. (eds.), The Mycota. Vol. IV Environmental and Microbial Relationships. Berlin: Springer, pp. 69-84.
57. Gadd, G. M., 2008. Transformation and mobilization of metals by microorganisms. In Violante, A., Huang, P. M., and Gadd, G. M. (eds.), Biophysico-Chemical Processes of Heavy Metals and Metalloids in Soil Environments. Chichester: Wiley, pp. 53-96.
58. Gadd, G. M., and Griffiths, A. J., 1978. Microorganisms and heavy metal toxicity. Microbial Ecology, 4, 303-317.
59. Gadd, G. M., and Griffiths, A. J., 1980. Effect of copper on morphology of Aureobasidium pullulans. Transactions of the British Mycological Society, 74, 387-392.
60. Gadd, G. M., and White, C., 1989. The removal of thorium from simulated acid process streams by fungal biomass. Biotechnology and Bioengineering, 33, 592-597.
61. Gadd, G. M., and White, C., 1990. Biosorption of radionuclides by yeast and fungal biomass. Journal of Chemical Technology and Biotechnology, 49, 331-343.
62. Gadd, G. M., and White, C., 1992. Removal of thorium from simulated acid process streams by fungal biomass: potential for thorium desorption and reuse of biomass and desorbent. Journal of Chemical Technology and Biotechnology, 55, 39-44.
63. Gadd, G. M., Chudek, J. A., Foster, R., and Reed, R. H., 1984. The osmotic responses of Penicillium ochro-chloron: changes in internal solute levels in response to copper and salt stress. Journal of General Microbiology, 130, 1969-1975.
64. Gadd, G. M., Fomina, M., and Burford, E. P., 2005. Fungal roles and function in rock, mineral and soil transformations. In Gadd, G. M., Semple, K. T., and Lappin-Scott, H. M. (eds.), Microorganisms in Earth Systems: Advances in Geomicrobiology. Cambridge: Cambridge University Press, pp. 201-231.
65. Gadd, G. M., Burford, E. P., Fomina, M., and Melville, K., 2007. Mineral transformations and biogeochemical cycles: a geomycological perspective. In Gadd, G. M., Watkinson, S. C., and Dyer, P. S. (eds.), Fungi in the Environment. Cambridge: Cambridge University Press, pp. 77-111.
66. Gharieb, M. M., Wilkinson, S. C., and Gadd, G. M., 1995. Reduction of selenium oxyanions by unicellular, polymorphic and filamentous fungi: cellular location of reduced selenium and implications for tolerance. Journal of Industrial Microbiology, 14, 300-311.
67. 2O) and the formation of calcium oxalate by Aspergillus niger and Serpula himantioides. Mycological Research, 102, 825-830.
68. Gharieb, M. M., Kierans, M., and Gadd, G. M., 1999. Transformation and tolerance of tellurite by filamentous fungi: accumulation, reduction and volatilization. Mycological Research, 103, 299-305.
69. Gorbushina, A. A., 2007. Life on the rocks, Environmental Microbiology, 9, 1613-1631.
70. Gorbushina, A. A., Krumbein, W. E., Hamann, R., Panina, L., Souchaijevsky, S., and Wollenzien, U., 1993. On the role of black fungi in colour change and biodeterioration of antique marbles. Geomicrobiology Journal, 11, 205-221.
71. Gorbushina, A. A., Krumbein, W. E., and Volkmann, M., 2002a. Rock surfaces as life indicators: new ways to demonstrate life and traces of former life. Astrobiology, 2, 203-213.
72. Gorbushina, A. A., Lyalikova, N. N., Vlasov, D. Y., and Khizhnyak, T. V., 2002b. Microbial communities on the monuments of Moscow and St. Petersburg: biodiversity and trophic relations. Microbiology, 71, 350-356.
73. Gorbushina, A. A., Whitehead, K., Dornieden, T., Niesse, A., Schulte, A., and Hedges, J. I., 2003. Black fungal colonies as units of survival: hyphal mycosporines synthesized by rock-dwelling microcolonial fungi. Canadian Journal of Botany, 81, 131-138.
74. Grote, G., and Krumbein, W. E., 1992. Microbial precipitation of manganese by bacteria and fungi from desert rock and rock varnish. Geomicrobiology Journal, 10, 49-57.
75. Gu, J. D., Ford, T. E., Berke, N. S., and Mitchell, R., 1998. Biodeterioration of concrete by the fungus Fusarium. International Bioterioration and Biodegradation, 41, 101-109.
76. Haas, J. R., and Purvis, O. W., 2006. Lichen biogeochemistry. In Gadd, G. M. (ed.), Fungi in Biogeochemical Cycles. Cambridge: Cambridge University Press, pp. 276-344.
77. Harvey, R. G., 1997. Polycyclic Aromatic Hydrocarbons. Hoboken: Wiley.
78. Hawksworth, D. L., 2001. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycological Research, 105, 1422-1432.
79. Heckman, D. S., Geiser, D. M., Eidell, B. R., Stauffer, R. L., Kardos, N. L., and Hedges, S. B., 2001. Molecular evidence for the early colonisation of land by fungi and plants. Science, 293, 1129-1133.
80. Hochella, M. F., 2002. Sustaining Earth: thoughts on the present and future roles in mineralogy in environmental science. Mineralog-ical Magazine, 66, 627-652.
81. Jacobs, H., Boswell, G. P., Ritz, K., Davidson, F. A., and Gadd, G. M., 2002. Solubilization of calcium phosphate as a consequence of carbon translocation by Rhizoctonia solani. FEMS Microbiology Ecology, 40, 65-71.
82. Jacobs, H., Boswell, G. P., Scrimgeour, C. M., Davidson, F. A., Gadd, G. M., and Ritz, K., 2004. Translocation of carbon by Rhizoctonia solani in nutritionally heterogeneous environments. Mycological Research, 108, 453-462.
83. Jarosz-Wilkolazka, A., and Gadd, G. M., 2003. Oxalate production by wood-rotting fungi growing in toxic metal-amended medium. Chemosphere, 52, 541-547.
84. Kierans, M., Staines, A. M., Bennett, H., and Gadd, G. M., 1991. Silver tolerance and accumulation in yeasts. Biology of Metals, 4, 100-106.
85. Kraemer, S. M., Cheah, S. F., Zapf, R., Xu, J. D., Raymond, K. N., and Sposito, G., 1999. Effect of hydroxamate siderophores on Fe release and Pb(II) adsorption by goethite. Geochimica et Cosmochimica Acta, 63, 3003-3008.
86. Kumar, R., and Kumar, A. V., 1999. Biodeterioration of Stone in Tropical Environments: An Overview. Santa Monica: The Getty Conservation Institute.
87. Leyval, C., and Joner, E. J., 2001. Bioavailability of heavy metals in the mycorrhizosphere. In Gobran, G. R., Wenzel, W. W., and Lombi, E. (eds.), Trace Elements in the Rhizosphere. Boca Raton: CRC, pp. 165-185.
88. Martino, E., Perotto, S., Parsons, R., and Gadd, G. M., 2003. Solubilization of insoluble inorganic zinc compounds by ericoid mycorrhizal fungi derived from heavy metal polluted sites. Soil Biology and Biochemistry, 35, 133-141.
89. Morley, G. F., and Gadd, G. M., 1995. Sorption of toxic metals by fungi and clay minerals. Mycological Research, 99, 1429-1438.
90. Nica, D., Davis, J. L., Kirby, L., Zuo, G., and Roberts, D. J., 2000. Isolation and characterization of microorganisms involved in the biodeterioration ofconcrete in sewers. International Biodeterioration and Biodegradation, 46, 61-68.
91. Purvis, O. W., 1996. Interactions of lichens with metals. Science Progress, 79, 283-309.
92. Purvis, O. W., and Halls, C., 1996. A review of lichens in metal-enriched environments. Lichenologist, 28, 571-601.
93. Redeker, K. R., Treseder, K. K., and Allen, M. F., 2004. Ectomycorrhizal fungi: a new source of atmospheric methyl halides? Global Change Biology, 10, 1009-1016.
94. Ritz, K., and Young, I. M., 2004. Interaction between soil structure and fungi. Mycologist, 18, 52-59.
95. Rosling, A., Lindahl, B. D., Taylor, A. F. S., and Finlay, R. D., 2004a. Mycelial growth and substrate acidification of ectomycorrhizal fungi in response to different minerals. FEMS Microbiology Ecology, 47, 31-37.
96. Rosling, A., Lindahl, B. D., and Finlay, R. D., 2004b. Carbon allocation to ectomycorrhizal roots and mycelium colonising different mineral substrates. New Phytologist, 162, 795-802.
97. Sayer, J. A., and Gadd, G. M., 1997. Solubilization and transformation of insoluble metal compounds to insoluble metal oxalates by Aspergillus niger. Mycological Research, 101, 653-661.
98. Sayer, J. A., Cotter-Howells, J. D., Watson, C., Hillier, S., and Gadd, G. M., 1999. Lead mineral transformation by fungi. Current Biology, 9, 691 -694.
99. Singleton, I., 2001. Fungal remediation of soils contaminated with persistent organic pollutants. In Gadd, G. M. (ed.), Fungi in Bioremediation. Cambridge: Cambridge University Press, pp. 79-96.
100. Smith, S. E., and Read, D. J., 1997. Mycorrhizal Symbiosis, 2nd edn. San Diego: Academic.
101. Sterflinger, K., 2000. Fungi as geologic agents. Geomicrobiology Journal, 17, 97-124.
102. Stotzky, G., 1966. Influence of clay minerals on microorganisms-II. Effect of various clay species, homoionic clays, and other particles on bacteria. Canadian Journal of Microbiology, 12, 831-848.
103. Strasser, H., Burgstaller, W., and Schinner, F., 1994. High yield production of oxalic acid for metal leaching purposes by Aspergillus niger. FEMS Microbiology Letters, 119, 365-370.
104. Sutherland, J. B., 2004. Degradation of hydrocarbons by yeasts and filamentous fungi. In Arora, D. K. (ed.), Fungal Biotechnology in Agricultural, Food, and Environmental Applications. New York: Marcel Dekker, pp. 443-455.
105. Taylor, T. N., and Osborm, J. M., 1996. The importance of fungi in shaping the palaeoecosystem. Review of Palaeobotany and Palynology, 90, 249-262.
106. Taylor, T. N., Remy, W., and Hass, H., 1994. Allomyces in the Devonian. Nature, 367, 601.
107. Taylor, T. N., Hass, H., and Kerp, H., 1997. A cyanolichen from the Lower Devonian Rhynie chert. American Journal of Botany, 84, 992-1004.
108. Taylor, T. N., Hass, H., Krings, M., and Hanlin, R. T., 2005. Perithecial ascomycetes from the 400 million year old Rhynie Chert: an example of a ancestral polymophism. Mycologia, 97, 269-285.
109. Thomson-Eagle, E. T., and Frankenberger, W. T., 1992. Bioremediation of soils contaminated with selenium. In Lal, R., and Stewart, B. A. (eds.), Advances in Soil Science. New York: Springer, pp. 261-309.
110. Vaughan, D. J., Pattrick, R. A. D., and Wogelius, R. A., 2002. Minerals, metals and molecules: ore and environmental mineralogy in the new millenium. Mineralogical Magazine, 66, 653-676.
111. Verrecchia, E. P., 2000. Fungi and sediments. In Riding, R. E., and Awramik, S. M. (eds.), Microbial Sediments. Berlin: Springer, pp. 69-75.
112. Verrecchia, E. P., Braissant, O., and Cailleau, G., 2006. The oxalate-carbonate pathway in soil carbon storage: the role of fungi and oxalotrophic bacteria. In Gadd, G. M. (ed.), Fungi in Biogeochemical Cycles. Cambridge: Cambridge University Press, pp. 289-310.
113. Wallander, H., Mahmood, S., Hagerberg, D., Johansson, L., and Pallon, J., 2003. Elemental composition of ectomycorrhizal mycelia identified by PCR-RFLP analysis and grown in contact with apatite or wood ash in forest soil. FEMS Microbiology Ecology, 44, 57-65.
114. Watling, R., and Harper, D. B., 1998. Chloromethane production by wood-rotting fungi and an estimate of the global flux to the atmosphere. Mycological Research, 102, 769-787.
115. Wengel, M., Kothe, E., Schmidt, C. M., Heide, K., and Gleixner, G., 2006. Degradation of organic matter from black shales and charcoal by the wood-rotting fungus Schizophyllum commune and release of DOC and heavy metals in the aqueous phase. Science of the Total Environment, 367, 383-393.
116. White, C., Wilkinson, S. C., and Gadd, G. M., 1995. The role of microorganisms in biosorption of toxic metals and radionuclides. International Biodeterioration and Biodegradation, 35, 17-40.
117. Zhdanova, N. N., Zakharchenko, V. A., Vember, V. V., and Nakonechnaya, L. T., 2000. Fungi from Chernobyl: mycobiota of the inner regions of the containment structures of the damaged nuclear reactor. Mycological Research, 104, 1421-1426.