Zones of chemical and physical interaction at interfaces between microbial communities and minerals: A model

Geomicrobiology Journal

Volumn 15, Issue 3, 1998, Pages 223-244

  Barker, W W ^a   Banfield, J F ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Clays; Lichens; Polymers; Weathering

Indexed keywords

EID: 0001172763     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490459809378078     Document Type: Article

References (73)

1. Amrhein C, Suarez DL. 1988. The use of a surface complexation model to describe the kinetics of ligand-promoted dissolution of anorthite. Geochim Cosmochim Acta 52:2785-2793.
2. Antweiler RC, Drever JI. 1983. The weathering of a late tertiary volcanic ash: Importance of organic solutes. Geochim Cosmochim Acta 47:623-629.
3. Banfield JF, Barker WW. 1994. Direct observation of reactant-product interfaces formed in natural weathering of exsolved, defective amphibole to smectite: Evidence for episodic, isovolumetric reactions involving structural inheritance. Geochim Cosmochim Acta 58:1419-1429.
4. Barker WW, Banfield JF. 1996. Biologically versus inorganically-mediated weathering reactions: Relationships between minerals and extracellular microbial polymers in lithobiontic communities. ChemGeol 132:55-69.
5. Barker WW, Welch SA, Banfield JF. 1997. Geomicrobiology of silicate mineral weathering. In: Reviews in mineralogy, Vol. 35. Washington, DC: Mineralogical Society of America, p 391-428.
6. Bennett P, Hiebert FK, Choi WJ. 1996. Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater. Chem Geol 132:45-53.
7. Berner RA. 1992. Weathering, plants, and the long-term carbon cycle. Geochim Cosmochim Acta 56:3225-3231.
8. Birrell KS. 1974. Effect of pretreatment with hydrogen peroxide on composition of clay fractions extracted from organic horizons of andosols. Trans Int Cong Soil Sci 7:179-189.
9. Brantley SL, Chen Y 1995. Chemical weathering rates of pyroxenes and amphiboles. In: White AF, Brantley SL, editors. Chemical weathering rates of silicate minerals. Reviews in mineralogy Volume 31. Washington, DC: Mineralogical Society of America, p 119-172.
10. Chapelle FH, Zelibor JL Jr., Grimes DY, Knobel LL. 1987. Bacteria in deep coastal plain sediments of Maryland: A possible source of CO2 to groundwater. Water Resources Res 23:1625-1632.
11. Chenu C, Roberson EB. 1996. Diffusion of glucose in microbial extracellular polysaccharide as affected by water potential. Soil Biol Biochem 28:877-884.
12. 2+ adsorption by a natural aluminum- and ironbearing surface coating on an aquifer sand. Geochim Cosmochim Acta 59:3535-3547.
13. De La Torre M, Gomez-Alarcon G, Vizcaino C, Garcia T. 1993. Biochemical mechanisms of stone alteration carried out by filamentous fungi living in stone monuments. Biogeochem 19:129-147.
14. de Vrind-de Jong EW, de Vrind JPM 1997. Algal deposition of carbonates and silicates. In: Reviews in mineralogy Vol. 35. Washington, DC: Mineralogical Society of America, p 347-409.
15. 2 treatments to oxidize organic matter. Clays Clay Miner 19:67-68.
16. Drever JI. 1994. The effect of land plants on the weathering rate of silicate minerals. Geochim Cosmochim Acta 58:2325-2332.
17. Easton RM. 1994. Lichens and rocks: A review. Geosci Can 21:59-76.
18. Eggleton RA. 1975. Nontronite topotaxial after hedenbergite. Am Miner 60:1063-1068.
19. Ehrlich HL. 1996. Geomicrobiology. New York: Marcel Dekker.
20. Fletcher M, Floodgate GD. 1973. An electron microscopic demonstration of an acidic polysaccharide involved in the adhesion of a marine bacterium to solid surfaces. J Gen Microbiol 74:325-334.
21. Fritz E, Knoch D, Meyer D. 1994. A new approach for rhizosphere research by X-ray microanalysis of micro-liter soils solutions. Plant Soil 161:219-223.
22. Gooday GW. 1994. Physiology of microbial degradation of chitin and chitosan. In Rutledge C, editor. Biochemistry of microbial degradation. Dordrecht: Kluwer. p 279-322.
23. Hallbauer DK, Jahns HM. 1977. Attack of lichens on quartz surfaces. Lichenologist 9:119-122.
24. Hering JG, Stumm W. 1990. Oxidative and reductive dissolution of minerals. In: Hochella MF Jr, White AF, editors. Reviews in mineralogy: Mineral-water interface geochemistry, Vol. 23. Washington, DC: Mineralogical Society of America, p 427-465.
25. Hernandez MAV, Robert M. 1975. Transformation profonde des micas sous l'action de l'acide galacturonique. Problem des smectities de podzols. C R Acad Sci Paris 281:523-526.
26. Hersman L, Lloyd T, Sposito G. 1995. Siderophore-promoted dissolution of hematite. Geochim Cosmochim Acta 59:3327-3330.
27. Hinsinger P, Elsass F, Jaillard B, Robert M. 1993. Root induced irreversible transformation of a trioctahedral mica in the rhizosphere of rape. J Soil Sci 44: 535-545.
28. Honegger R, Peter M. 1994. Routes of solute translocation and the location of water in heteromerous lichens visualized with cryotechniques in light and electron microscopy. Symbiosis 16:167-186.
29. Huang PM, Violante A. 1986. Influences of organic acids on crystallization and surface properties of precipitation products of aluminum. In: Huang PM, Schnitzer M, editors. Interactions of soil minerals with natural organics and microbes. SSSA Special Pub. No. 17. Madison, WI: Soil Science Society of America, p 159-222.
30. Jeffries TW. 1994. Biodegradation of lignin and hemicelluloses. In: Rutledge C, editor. Biochemistry of microbial degradation. Dordrecht: Kluwer. p 233-278.
31. Kappen L. 1988. Ecophysiological relationships in different climatic regions. In: Galun M, editor. CRC handbook of lichenology Vol II. Boca Raton, FL: CRC Press, p 37-100.
32. Konhauser KO, Ferris FG. 1996. Diversity of iron and silica precipitation by microbial mats in hydrothermal waters, Iceland: Implications for Precambrian iron formations. Geology 24:323-326.
33. Krumbein WE, Urzi CE, Gehrmann C. 1991. Biocorrosion and biodeterioration of antique and medieval glass. Geomicrobiol J 9:139-160.
34. Kümmert R, Stumm W. 1980. The surface complexation of organic acids on hydrous a-Al2O3. J Colloid Interface Sci 75:373-385.
35. Lakvulich L M, Wiens JH. 1970. Comparison of organic matter destruction by hydrogen peroxide and sodium hypochlorite and its effects on selected mineral constituents. Soil Sci Soc Am Proc 34:755-758.
36. Leyval C, Berthelin J. 1991. Weathering of a mica by roots and rhizospheric microorganisms of pine. Soil Sci Soc Am J 55:1009-1016.
37. Lungstrôm U, Öhman LO. 1990. Dissolution of feldspars in the presence of natural organic solutes. J Soil Sci 41:359-369.
38. Lynch JM. 1990. Microbial metabolites. In: Lynch JM, editor. The rhizosphere. New York: Wiley. p 177-206.
39. MacGowan DB, Surdam RC. 1988. Difunctional carboxylic acid anions in oilfield waters. Org Geochem 12:245-259.
40. Malinovskaya IM, Kosenko LV, Votseiko SK, Podgorskii VS. 1990. Role of Bacillus mucilaginosus polysaccharide in degradation of silicate minerals. Mikrobiologiya 59:70-78.
41. Mera MU, Beveridge TJ. 1993. Mechanism of silicate binding to the bacterial cell wall in Bacillus subtilis. J Bacteriol 175:1936-1945.
42. Myers PE, Sood MK, Berlin LA, Falster AU. 1984. Field Trip #3—The Wausau syenite compex, central Wisconsin. 30th Ann Conf Lake Superior Geol.
43. Nash TH. 1996 Lichen biology. Cambridge: Cambridge University Press.
44. Ochs M, Brunner I, Stumm W, Cosovic B. 1993. Effects of root exudates and humic substances on weathering kinetics. Water Air Soil Pollut 68:213-229.
45. Ophir T, Gutnick DL. 1994. A role for polysaccharides in the protection of microorganisms from desiccation. Appl Environ Microbiol 60:740-745.
46. Palmer RJ Jr, Siebert J, Hirsch P. 1991. Biomass and organic acids in sandstone of a weathered building: Production by bacterial and fungal isolates. Microb Ecol 21:253-266.
47. Paris F, Bonnaud P, Ranger J, Robert M, Lapeyrie F. 1995. Weathering of ammonium- or calciumsaturated 2:1 phyllosilicates by ectomycorrhizal fungi in vitro. Soil Biol Biochem 27:1237-1244.
48. Paris F, Botton B, Lapeyrie F. 1996. In vitro weathering of phlogopite by ectomycorrhizal fungi. Plant Soil 179:141-150.
49. Piervittori R, Salvadori O, Laccisaglia A. 1994. Literature on lichens and biodeterioration of stonework. I. Lichenologist 26:171-192.
50. Rundel PW. 1988. Water relations. In: Galun M, editor. CRC handbook of lichenology Vol II. Boca Raton, FL: CRC Press, p 17-36.
51. Rzepecki LM, Waite JH. 1991. DOPA proteins: Versatile varnishes and adhesives from marine fauna. Bioorg Marine Chem 4:119-148.
52. Sand W, Bock E. 1991. Biodeterioration of mineral materials by microorganisms—Biogenic sulfuric and nitric acid corrosion of concrete and natural stone. Geomicrobiol J 9:129-138.
53. Schnoor JL. 1990. Kinetics of chemical weathering: A comparison of laboratory and field rates. In: Stumm W, editor. Aquatic chemical kinetics: Reaction rates of processes in natural waters. New York: Wiley, p 475-504.
54. Schultze-Lam S, Harauz G, Beveridge TJ. 1992. Participation of a bacterial S-layer in fine-grain mineral formation. J Bacteriol 174:7971-7981.
55. Schultze-Lam S, Fortin D, Davis BS, Beveridge TJ. 1996. Mineralization of bacterial surfaces. Chem Geol 132:171-181.
56. Schwartzman DW, Volk T. 1989. Biotic enhancement of weathering and the habitability of Earth. Nature 340:457-459.
57. Staudigel H, Chastain RA, Yayanos A, Bourcier W. 1995. Biologically mediated dissolution of glass. Chem Geol 126:147-154.
58. Stevenson FJ, Fitch A. 1986. Chemistry of complexation of metal ions with soil solution organics. In: Huang PM, Schnitzer M, editors. Interactions of soil minerals with natural organics and microbes. SSSA Special Pub No 17. Madison, WI: Soil Science Society of America p 29-58.
59. Sutherland IW. 1972. Bacterial exopolysaccharides. Adv Microbiol Phys 6:142-213.
60. Swoboda-Colberg NG, Drever JI. 1992. Mineral dissolution rates: a comparison of laboratory and field studies. In: Kharaka YK, Maest AS, editors. Proc. 7th Int Symp Water-Rock Interaction, Park City, UT, 13-18 July 1992. Balkema. p 115-118.
61. Thorseth IH, Furnes H, Heldal M. 1992. The importance of microbial activity in the alteration of natural basaltic glass. Geochim Cosmochim Acta 56:845-850.
62. Thorseth IH, Furnes H, Tumyr O.1995. Textural and chemical effects of bacterial activity on basaltic glass: An experimental approach. Chem Geol 119:139-160.
63. Ullman WJ, Kirchman DL, Welch SA, Vandevivere P. 1996. Laboratory evidence for microbially mediated silicate mineral dissolution in nature. Chem Geol 132:11-17.
64. Urrutia MM, Beveridge TJ. 1994. Formation of fine-grained metal and silicate precipitates on a bacterial surface (Bacillus subtilis). Chem Geol 116:261-280.
65. Urzi C, Lisi S, Criseo G, Pernice A. 1991. Adhesion to and degradation of marble by a Micrococcus strain isolated from it. Geomicrobiol J 9:81-90.
66. Vandevivere P, Welch SA, Ullman WJ, Kirchman DL. 1994. Enhanced dissolution of silicate minerals by bacteria at near-neutral pH. Microb Ecol 27:241-251.
67. Velbel MA. 1993. Constancy of silicate-mineral weathering-rate ratios between natural and experimental weathering: Implications for hydrologie control of differences in absolute rate. Chem Geol 105:89-99.
68. Welch SA, Barker WW, Banfield JF. 1998. Microbial extracellular polysaccharides and plagioclase dissolution. Geochim Cosmochim Acta, In review.
69. Welch SA, Ullman WJ. 1993. The effect of organic acids on plagioclase dissolution rates and stoichiometry. Geochim Cosmochim Acta 57:2725-2736.
70. Welch SA, Vandevivere P. 1995. Effect of microbial and other naturally occurring polymers on mineral dissolution. Geomicro J 12:227-238.
71. Wieland E, Wehrli B, Stumm W. 1988. The coordination chemistry of weathering: III. A generalization on the dissolution rates of minerals. Geochim Cosmochim Acta 52:1969-1981.
72. Wierzchos J, Ascaso C. 1996. Morphological and chemical features of bioweathered granitic biotite induced by lichen activity. Clays Clay Miner 44:652-657.
73. 2, and organic acids. Geochim Cosmochim Acta 55:943-954.