k-space and q-space: Combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7T

NeuroImage

Volumn 60, Issue 2, 2012, Pages 967-978

  Heidemann, Robin M ^a   Anwander, Alfred ^a   Feiweier, Thorsten ^b   Knösche, Thomas R ^a   Turner, Robert ^a  

^a MAX PLANCK INSTITUTE FOR HUMAN COGNITIVE AND BRAIN SCIENCES   (Germany)

^b SIEMENS AG   (Germany)

Author keywords

Diffusion MRI; Fiber tracking; Parallel imaging; Ultra high field MRI; Zoomed imaging

Indexed keywords

ADULT; ANALYTICAL PARAMETERS; ANGULAR RESOLUTION; ANISOTROPY; ARTICLE; BRAIN CORTEX; CONTROLLED STUDY; DIAGNOSTIC IMAGING; DIFFUSION WEIGHTED IMAGING; ECHO PLANAR IMAGING; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; IN VIVO STUDY; K SPACE; MAGNETIC FIELD; NERVE FIBER; NORMAL HUMAN; PHANTOM; PHYSICAL PARAMETERS; PRIORITY JOURNAL; Q SPACE; SIGNAL NOISE RATIO; SPATIAL RESOLUTION; WHITE MATTER; WHOLE BODY SCANNER; ZOOMED IMAGING AND PARTIALLY PARALLEL ACQUISITION;

BRAIN; BRAIN MAPPING; DIFFUSION MAGNETIC RESONANCE IMAGING; DIFFUSION TENSOR IMAGING; HUMANS;

EID: 84857013169     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2011.12.081     Document Type: Article

References (56)

1. Aboitiz F., Scheibel A.B., Fisher R.S., Zaidel E. Fiber composition of the human corpus callosum. Brain Res. 1992, 598:143-153.
2. Assaf Y., Basser P.J. Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain. NeuroImage 2005, 27:48-58.
3. Assaf Y., Blumenfeld-Katzir T., Yovel Y., Basser P.J. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn. Reson. Med. 2008, 59:1347-1354.
4. Behrens T.E.J., Woolrich M.W., Jenkinson M., Johansen-Berg H., Nunes R.G., Clare S., Matthews P.M., Brady J.M., Smith S.M. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 2003, 50:1077-1088.
5. Behrens T.E.J., Johannsen Berg H., Jbabdi S., Rushworth M.F.S., Woolrich M.W. Probabilistic diffusion tractography with multiple fibre orientations: what can we gain?. NeuroImage 2007, 34:144-155.
6. Braitenberg V. A note on myeloarchitectonics. J. Comp. Neurol. 1962, 118:141-156.
7. Breuer F.A., Blaimer M., Heidemann R.M., Mueller M.F., Griswold M.A., Jakob P.M. Controlled aliasing in parallel imaging results in higher acceleration (CAIPIRINHA) for multi-slice imaging. Magn. Reson. Med. 2005, 53:684-691.
8. Breuer F.A., Kannengiesser S.A.R., Blaimer M., Seiberlich N., Jakob P.M., Griswold M.A. General formulation for quantitative G-factor calculation in GRAPPA reconstructions. Magn. Reson. Med. 2009, 62:739-746.
9. Descoteaux M., Deriche R., Knösche T.R., Anwander A. Deterministic and probabilistic tractography based on complex fibre orientation distributions. IEEE Trans. Med. Imaging 2009, 28:269-286.
10. Duong T.Q., Yacoub E., Adriany G., Hu X., Ugurbil K., Vaughan T., Merkle H., Kim S.-G. High-resolution spin-echo BOLD, and CBF fMRI at 4 and 7T. Mag. Reson. Med. 2002, 48:589-593.
11. Eichner C., Ivanov D., Feiweier T., Anwander A., Knösche T., Turner R., Heidemann R.M. High-resolution diffusion-weighted imaging at 7T - issues of slice thickness and fat suppression. Proceedings of the 17th Scientific Meeting OHBM, Quebec, #560 2011.
12. Feinberg D.A., Hale J.S. Echo-Planar-Inner Volume Imaging at 0.35T. In Proceedings of Soc Magn Res Med, Montreal 1986, 950.
13. Feinberg D.A., Hoenninger J.C., Crooks L.E., Kaufman L., Watts J.C., Arakawa M. Inner volume MR imaging: technical concepts and their application. Radiology 1985, 156:743-747.
14. Fillard P., Pennec X., Arsigny V., Ayache N. Clinical DT-MRI estimation, smoothing, and fiber tracking with log-Euclidean metrics. IEEE Trans. Med. Imaging 2007, 26:1472-1482.
15. Finsterbusch J. High-resolution diffusion tensor imaging with inner field-of-view EPI. J. Magn. Reson. Imaging 2009, 29:987-993.
16. Firbank M.J., Coulthard A., Harrison R.M., Williams E.D. A comparison of two methods for measuring the signal to noise ratio on MR images. Phys. Med. Biol. 1999, 44:N261-N264.
17. Griswold M.A. Advanced k-space techniques. Book of abstract: 2nd International Workshop on Parallel Imaging, Zuerich, Switzerland 2004, 16-18.
18. Griswold M.A., Jakob P.M., Chen Q., Goldfarb J., Manning W.J., Edelman R.R., Sodickson D.K. Resolution enhancement in single-shot imaging using simultaneous acquisition of spatial harmonics (SMASH). Magn. Reson. Med. 1999, 41:1236-1245.
19. Griswold M.A., Jakob P.M., Heidemann R.M., Nittka M., Jellus V., Wang J., Kiefer B., Haase A. GeneRalized Autocalibrating Partially Parallel Acquisitions (GRAPPA). Magn. Reson. Med. 2002, 47:1202-1210.
20. Heidemann R.M., Fasano F., Vogler M., Leuze C., Pfeuffer J., Turner R. Improving image quality by combining outer volume suppression and parallel imaging: zoomed EPI with GRAPPA at 7T. Proceedings of the 16th Scientific Meeting ISMRM, Toronto 2008, 1284.
21. Heidemann R.M., Feiweier T., Anwander A., Fasano F., Pfeuffer J., Turner R. High resolution single-shot diffusion weighted imaging with a combination of zoomed EPI and parallel imaging. Proceedings of the 17th Scientific Meeting ISMRM, Honululu 2009, 2736.
22. Howseman A.M., Grootoonk S., Porter D.A., Ramdeen J., Holmes A.P., Turner R. The effect of slice order and thickness on fMRI activation data using multislice echo-planar imaging. NeuroImage 1999, 9:363-376.
23. Hwang T.S., van Zijl P.C.M., Garwood M. Asymmetric adiabatic pulses for NH selection. J. Magn. Reson. 1999, 138:173-177.
24. Ivanov D., Schäfer A., Streicher M., Heidemann R.M., Trampel R., Turner R. A simple low-SAR technique for chemical-shift selection with high field spin-echo imaging. Magn. Reson. Med. 2010, 64:319-326.
25. Jansons K.M., Alexander D.C. Persistent angular structure: new insights from diffusion magnetic resonance imaging data. Inverse Probl. 2003, 19:1031-1046.
26. Jones D.K. Studying connections in the living human brain with diffusion MRI. Cortex 2008, 44:936-952.
27. Kaden E., Knösche T.R., Anwander A. Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging. NeuroImage 2007, 37:474-488.
28. Kaden E., Anwander A., Knösche T.R. Variational inference of the fiber orientation density using diffusion MR imaging. NeuroImage 2008, 42:1366-1380.
29. Karampinos D.C., Van A.T., Olivero W.C., Georgiadis J.G., Sutton B.P. High-resolution diffusion tensor imaging of the human pons with a reduced field-of-view, multishot, variable-density, spiral acquisition at 3T. Magn. Reson. Med. 2009, 62:1007-1016.
30. Le Roux P., Gilles R.J., McKinnon G.C., Carlier P.G. Optimized outer volume suppression for single-shot fast spin-echo cardiac imaging. J. Magn. Reson. Imaging 1998, 8:1022-1032.
31. Lohmann G., Bohn S., Müller K., Trampel R., Turner R. Image restoration and spatial resolution in 7-Tesla magnetic resonance imaging. Magn. Reson. Med. 2010, 64:15-22.
32. Mansfield P., Ordidge R.J., Coxon R. Zonally magnified EPI in real time by NMR. J. Phys. E Sci. Instrum. 1988, 21:275-280.
33. McNab J.A., Jbabdi S., Deoni S.C.L., Douaud G., Behrens T.E.J., Miller K.L. High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession. NeuroImage 2009, 46:775-785.
34. Miller K.L., Stagg C.J., Douaud G., Jbabdi S., Smith S.M., Behrens T.E.J., Jenkinson M., Chance S.A., Esiri M.M., Voets N.L., Jenkinson N., Aziz T.Z., Turner M.R., Johansen-Berg H., McNab J.A. Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage 2011, 57:167-181.
35. Morelli J.N., Runge V.M., Feiweier T., Kirsch J.E., Williams K.W., Attenberger U.I. Evaluation of a modified Stejskal-Tanner diffusion encoding scheme, permitting a marked reduction in TE, in diffusion-weighted imaging of stroke patients at 3T. Invest. Radiol. 2010, 45:29-35.
36. Mori S., van Zijl P.C.M. Fiber tracking: principles and strategies - a technical review. NMR Biomed. 2002, 15:468-480.
37. Park H.W., Kim D.J., Cho Z.H. Gradient reversal technique and its applications to chemical-shift-related NMR imaging. Magn. Res. Med. 1987, 4:526-536.
38. Pauly J., Nishimura D., Macovski A. A k-space analysis of small-tip-angle excitation. J. Magn. Reson. 1989, 81:43-56.
39. Pfeuffer J., van de Moortele P.F., Yacoub E., Shmuel A., Adriany G., Andersen P., Merkle H., Garwood M., Ugurbil K., Hu X. Zoomed functional imaging in the human brain at 7Tesla with simultaneous high spatial and high temporal resolution. NeuroImage 2002, 17:272-286.
40. Pruessmann K.P., Weiger M., Scheidegger B., Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn. Reson. Med. 1999, 42:952-962.
41. Roebroeck A., Galuske R., Formisano E., Chiry O., Bratzke H., Ronen I., Shik Kim D., Goebel R. High-resolution diffusion tensor imaging and tractography of the human optic chiasm at 9.4T. NeuroImage 2008, 39:157-168.
42. Sarlls J.E., Pierpaoli C. In vivo diffusion tensor imaging of the human optic chiasm at sub-millimeter resolution. NeuroImage 2009, 47:1244-1251.
43. Setsompop K., Gagoski G.A., Polimeni J., Witzel T., Wedeen V.J., Wald L.L. Blipped-controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g-factor penalty. Magn. Reson. Med. 2011, 10.1002/mrm.23097.
44. Tournier J.-D., Calamante F., Gadian D.G., Connelly A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage 2004, 23:1176-1185.
45. Tournier J.-D., Calamante F., Connelly A. Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. NeuroImage 2007, 35:1459-1472.
46. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 2004, 52:1358-1372.
47. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 2002, 48:577-582.
48. Tuch D.S., Reese T.G., Wiegell M.R., Wedeen V.J. Diffusion MRI of complex neural architecture. Neuron 2003, 40:885-889.
49. Wedeen V.J., Hagmann P., Tseng W.-Y.I., Reese T.G., Weisskoff R.M. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 2005, 54:1377-1386.
50. Wedeen V.J., Wang R.P., Schmahmann J.D., Benner T., Tseng W.Y.I., Dai G., Pandya D.N., Hagmann P., D'Arceuil H., de Crespigny A.J. Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. NeuroImage 2008, 41:1267-1277.
51. Weinstein D., Kindlmann G., Lundberg E. Tensorlines: advection-diffusion based propagation through diffusion tensor fields. Proceedings of the IEEE Visualization Conference 1999, 249-530.
52. Weiskopf N., Hutton C., Josephs O., Turner R., Deichmann R. Optimized EPI for fMRI studies of the orbitofrontal cortex: compensation of susceptibility-induced gradients in the readout direction. MAGMA 2007, 20:39-49.
53. Wheeler-Kingshott C.A.M., Parker G.J.M., Symms M.R., Hickman S.J., Tofts P.S., Miller D.H., Barker G.J. ADC mapping of the human optic nerve: increased resolution, coverage, and reliability with CSF-suppressed ZOOM-EPI. Magn. Reson. Med. 2002, 47:24-31.
54. Wiesinger F., Van de Moortele P.-F., Adriany G., De Zanche N., Ugurbil K., Pruessmann K.P. Parallel imaging performance as a function of field strength-an experimental investigation using electrodynamic scaling. Magn. Reson. Med. 2004, 52:953-964.
55. Wilm B.J., Svensson J., Henning A., Pruessmann K.P., Boesiger P., Kollias S.S. Reduced field-of-view MRI using outer volume suppression for spinal cord diffusion imaging. Magn. Reson. Med. 2007, 57:625-630.
56. Yassa M.A., Muftuler L.T., Stark C.E.L. Ultrahigh-resolution microstructural diffusion tensor imaging reveals perforant path degradation in aged humans in vivo. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:12687-12691.