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Journal of Chemical Physics

Volumn 136, Issue 5, 2012, Pages

Stochastic mapping of the Michaelis-Menten mechanism

(2) Dóka, Éva a Lente, Gábor a

a UNIVERSITY OF DEBRECEN (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

KINETIC STUDY; MICHAELIS-MENTEN; MICHAELIS-MENTEN KINETIC SCHEMES; PARAMETER SPACES; PARAMETER VALUES; STOCHASTIC KINETICS; STOCHASTIC MAPPING;

ENZYMES; KINETICS;

STOCHASTIC SYSTEMS;

ENZYME;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; CATALYSIS; KINETICS;

ALGORITHMS; CATALYSIS; ENZYMES; KINETICS; MODELS, BIOLOGICAL;

EID: 84856738096 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.3681942 Document Type: Article

Times cited : (15)

References (39)

1
- 0000870544
- L. Michaelis and M. L. Menten, Biochem. Z. 49, 333 (1913).
- (1913) Biochem. Z. , vol.49 , pp. 333
- Michaelis, L.¹ Menten, M.L.²

2
- 0000292524
- G. E. Briggs and J. B. Haldane, Biochem. J. 19, 338 (1925).
- (1925) Biochem. J. , vol.19 , pp. 338
- Briggs, G.E.¹ Haldane, J.B.²

3
- 0041821836
- A perspective on enzyme catalysis
- DOI 10.1126/science.1085515
- S. J. Benkovic and S. Hammes-Schiffer, Science 301, 1196 (2003). 10.1126/science.1085515 (Pubitemid 37052200)
- (2003) Science , vol.301 , Issue.5637 , pp. 1196-1202
- Benkovic, S.J.¹ Hammes-Schiffer, S.²

4
- 33644897627
- 10.1038/nchembio0206-66
- N. G. Walter, Nat. Chem. Biol. 2, 66 (2006). 10.1038/nchembio0206-66
- (2006) Nat. Chem. Biol. , vol.2 , pp. 66
- Walter, N.G.¹

5
- 47649091426
- Cutting the forest to see a single tree?
- DOI 10.1038/nchembio0808-440, PII NCHEMBIO0808440
- A. M. van Oijen, Nat. Chem. Biol. 4, 440 (2008). 10.1038/nchembio0808-440 (Pubitemid 352019766)
- (2008) Nature Chemical Biology , vol.4 , Issue.8 , pp. 440-443
- Van Oijen, A.M.¹

6
- 0028113846
- Fluctuation analysis of motor protein movement and single enzyme kinetics
- DOI 10.1073/pnas.91.25.11782
- K. Svoboda, P. P. Mitra, and S. M. Block, Proc. Natl. Acad. Sci. U.S.A. 91, 11782 (1994). 10.1073/pnas.91.25.11782 (Pubitemid 24368547)
- (1994) Proceedings of the National Academy of Sciences of the United States of America , vol.91 , Issue.25 , pp. 11782-11786
- Svoboda, K.¹ Mitra, P.P.² Block, S.M.³

7
- 26844562708
- 10.1126/science.282.5395.1877
- H. P. Lu, L. Xun, and X. S. Xie, Science 282, 1877 (1998). 10.1126/science.282.5395.1877
- (1998) Science , vol.282 , pp. 1877
- Lu, H.P.¹ Xun, L.² Xie, X.S.³

8
- 0041821716
- Single-molecule kinetics of exonuclease reveal base dependence and dynamic disorder
- DOI 10.1126/science.1084387
- A. M. van Oijen, P. C. Blainey, D. J. Crampton, C. C. Richardson, T. Ellenberger, and X. S. Xie, Science 301, 1235 (2003). 10.1126/science.1084387 (Pubitemid 37052212)
- (2003) Science , vol.301 , Issue.5637 , pp. 1235-1238
- Van Oijen, A.M.¹ Blainey, P.C.² Crampton, D.J.³ Richardson, C.C.⁴ Ellenberger, T.⁵ Xie, X.S.⁶

9
- 29344466944
- Conformation coupled enzyme catalysis: Single-molecule and transient kinetics investigation of dihydrofolate reductase
- DOI 10.1021/bi051378i
- N. M. Antikainen, R. D. Smiley, S. J. Benkovic, and G. G. Hammes, Biochemistry 44, 16835 (2005). 10.1021/bi051378i (Pubitemid 43007212)
- (2005) Biochemistry , vol.44 , Issue.51 , pp. 16835-16843
- Antikainen, N.M.¹ Smiley, R.D.² Benkovic, S.J.³ Hammes, G.G.⁴

10
- 19944433435
- Single-enzyme kinetics of CALB-catalyzed hydrolysis
- DOI 10.1002/anie.200460625
- K. Velonia, O. Flomenbom, D. Loos, S. Masuo, M. Cotlet, Y. Engelborghs, J. Hofkens, A. E. Rowan, J. Klafter, R. J. M. Nolte, and F. C. de Schryver, Angew. Chem., Int. Ed. 44, 560 (2005). 10.1002/anie.200460625 (Pubitemid 40188108)
- (2005) Angewandte Chemie - International Edition , vol.44 , Issue.4 , pp. 560-564
- Velonia, K.¹ Flomenbom, O.² Loos, D.³ Masuo, S.⁴ Cotlet, M.⁵ Engelborghs, Y.⁶ Hofkens, J.⁷ Rowan, A.E.⁸ Klafter, J.⁹ Nolte, R.J.M.¹⁰ De Schryver, F.C.¹¹

11
- 33644910749
- 10.1038/nchembio759
- B. P. English, W. Min, A. M. van Oijen, K. T. Lee, G. Luo, H. Sun, B. Cherayil, S. C. Kou, and X. S. Xie, Nat. Chem. Biol. 2, 87 (2006). 10.1038/nchembio759
- (2006) Nat. Chem. Biol. , vol.2 , pp. 87
- English, B.P.¹ Min, W.² Van Oijen, A.M.³ Lee, K.T.⁴ Luo, G.⁵ Sun, H.⁶ Cherayil, B.⁷ Kou, S.C.⁸ Xie, X.S.⁹

12
- 42149136142
- Distinct and long-lived activity states of single enzyme molecules
- DOI 10.1021/ja711414f
- D. M. Rissin, H. H. Gorris, and D. R. Walt, J. Am. Chem. Soc. 130, 5349 (2008). 10.1021/ja711414f (Pubitemid 351537095)
- (2008) Journal of the American Chemical Society , vol.130 , Issue.15 , pp. 5349-5353
- Rissin, D.M.¹ Gorris, H.H.² Walt, D.R.³

13
- 77953894492
- 10.1039/c002666b
- N. K. Lee, H. R. Koh, K. Y. Han, J. Lee, and S. K. Kim, Chem. Commun. 46, 4683 (2010). 10.1039/c002666b
- (2010) Chem. Commun. , vol.46 , pp. 4683
- Lee, N.K.¹ Koh, H.R.² Han, K.Y.³ Lee, J.⁴ Kim, S.K.⁵

14
- 0014789591
- 10.1016/0022-5193(70)90139-6
- P. J. Staff, J. Theor. Biol. 27, 221 (1970). 10.1016/0022-5193(70)90139-6
- (1970) J. Theor. Biol. , vol.27 , pp. 221
- Staff, P.J.¹

15
- 0017595705
- P. Arnyi and J. Tth, Acta Biochim. Biophys. Acad. Sci. Hung. 12, 375 (1977).
- (1977) Acta Biochim. Biophys. Acad. Sci. Hung. , vol.12 , pp. 375
- Arnyi, P.¹ Tth, J.²

16
- 0040611135
- 10.1016/S0301-0104(99)00098-1
- L. Edman, Z. Foldes-Papp, S. Wennmalm, and R. Rigler, Chem. Phys. 247, 11 (1999). 10.1016/S0301-0104(99)00098-1
- (1999) Chem. Phys. , vol.247 , pp. 11
- Edman, L.¹ Foldes-Papp, Z.² Wennmalm, S.³ Rigler, R.⁴

17
- 0035692393
- 10.1002/1438-5171(200112)2:4229::AID-SIMO2293.0.CO;2-9
- X. S. Xie, Single Mol. 2, 229 (2001). 10.1002/1438-5171(200112)2:4229:: AID-SIMO2293.0.CO;2-9
- (2001) Single Mol. , vol.2 , pp. 229
- Xie, X.S.¹

18
- 0035399912
- Single molecule nanobioscience
- DOI 10.1016/S0968-0004(01)01860-6, PII S0968000401018606
- A. Ishijima and T. Yanagida, Trends Biochem. Sci. 26, 438 (2001). 10.1016/S0968-0004(01)01860-6 (Pubitemid 32607486)
- (2001) Trends in Biochemical Sciences , vol.26 , Issue.7 , pp. 438-444
- Ishijima, A.¹ Yanagida, T.²

19
- 0037058951
- Single-molecule enzymology: Stochastic Michaelis-Menten kinetics
- DOI 10.1016/S0301-4622(02)00145-X, PII S030146220200145X
- H. Qian and E. L. Elson, Biophys. Chem. 101-102, 565 (2002). 10.1016/S0301-4622(02)00145-X (Pubitemid 35462072)
- (2002) Biophysical Chemistry , vol.101-102 , pp. 565-576
- Qian, H.¹ Elson, E.L.²

20
- 0037444724
- 10.1063/1.1545446
- C. V. Rao and A. P. Arkin, J. Chem. Phys. 118, 4999 (2003). 10.1063/1.1545446
- (2003) J. Chem. Phys. , vol.118 , pp. 4999
- Rao, C.V.¹ Arkin, A.P.²

21
- 3142577523
- 10.1016/j.compbiolchem.2004.05.001
- T. E. Turner, S. Schnell, and K. Burrage, Comput. Biol. Chem. 28, 165 (2004). 10.1016/j.compbiolchem.2004.05.001
- (2004) Comput. Biol. Chem. , vol.28 , pp. 165
- Turner, T.E.¹ Schnell, S.² Burrage, K.³

22
- 27544450315
- Single-molecule Michaelis - Menten equations
- DOI 10.1021/jp051490q
- S. C. Kou, B. J. Cherayil, W. Min, B. P. English, and X. S. Xie, J. Phys. Chem. B 109, 19068 (2005). 10.1021/jp051490q (Pubitemid 41541103)
- (2005) Journal of Physical Chemistry B , vol.109 , Issue.41 , pp. 19068-19081
- Kou, S.C.¹ Cherayil, B.J.² Min, W.³ English, B.P.⁴ Xie, X.S.⁵

23
- 84856705717
- arXiv:0901.2844
- M. Basu and P. K. Mohanty, arXiv:0901.2844 (2009).
- (2009)
- Basu, M.¹ Mohanty, P.K.²

24
- 77954569385
- 10.1016/S0076-6879(10)75010-2
- J. R. Moffitt, Y. R. Chemla, and C. Bustamante, Meth. Enzymol. 475, 221 (2010). 10.1016/S0076-6879(10)75010-2
- (2010) Meth. Enzymol. , vol.475 , pp. 221
- Moffitt, J.R.¹ Chemla, Y.R.² Bustamante, C.³

25
- 79951786683
- Computational Biology Vol. 15, edited by P. Z. Shi and H. Qian (Springer-Verlag, London)
- Frontiers in Computational and Systems Biology, Computational Biology Vol. 15, edited by, P. Z. Shi, and, H. Qian, (Springer-Verlag, London 2010), p. 175.
- (2010) Frontiers in Computational and Systems Biology , pp. 175

26
- 77955308973
- 10.1016/j.physa.2010.05.041
- M. Yi and Q. Liu, Physica A 389, 3791 (2010). 10.1016/j.physa.2010.05.041
- (2010) Physica A , vol.389 , pp. 3791
- Yi, M.¹ Liu, Q.²

27
- 78751699907
- 10.1049/iet-syb.2009.0057
- K. R. Sanft, D. T. Gillespie, and L. R. Petzold, IET Syst. Biol. 5, 58 (2011). 10.1049/iet-syb.2009.0057
- (2011) IET Syst. Biol. , vol.5 , pp. 58
- Sanft, K.R.¹ Gillespie, D.T.² Petzold, L.R.³

28
- 33645429016
- 10.1021/j100540a008
- D. T. Gillespie, J. Phys. Chem. 81, 2340 (1977). 10.1021/j100540a008
- (1977) J. Phys. Chem. , vol.81 , pp. 2340
- Gillespie, D.T.¹

29
- 29444437824
- Stochastic kinetic models of chiral autocatalysis: A general tool for the quantitative interpretation of total asymmetric synthesis
- DOI 10.1021/jp054613f
- G. Lente, J. Phys. Chem. A 109, 11058 (2005). 10.1021/jp054613f (Pubitemid 43010690)
- (2005) Journal of Physical Chemistry A , vol.109 , Issue.48 , pp. 11058-11063
- Lente, G.¹

30
- 77957314724
- 10.3390/sym2020767
- G. Lente, Symmetry 2, 767 (2010). 10.3390/sym2020767
- (2010) Symmetry , vol.2 , pp. 767
- Lente, G.¹

31
- 77954458763
- 10.1007/s10910-010-9680-8
- B. Barabs, J. Tth, and G. Plyi, J. Math. Chem. 48, 457 (2010). 10.1007/s10910-010-9680-8
- (2010) J. Math. Chem. , vol.48 , pp. 457
- Barabs, B.¹ Tth, J.² Plyi, G.³

32
- 84856690219
- See supplementary material at E-JCPSA6-136-020206 for additional figures and mathematical proofs of the equations appearing in the manuscript
- See supplementary material at http://dx.doi.org/10.1063/1.3681942 E-JCPSA6-136-020206 for additional figures and mathematical proofs of the equations appearing in the manuscript.

33
- 79958816165
- (Manchester University Press, Manchester, UK)
- P. rdi and J. Tth, Mathematical Models of Chemical Reactions (Manchester University Press, Manchester, UK, 1981), p. 91.
- (1981) Mathematical Models of Chemical Reactions , pp. 91
- Rdi, P.¹ Tth, J.²

34
- 34548474499
- Two classes of quasi-steady-state model reductions for stochastic kinetics
- DOI 10.1063/1.2764480
- E. A. Mastny, E. L. Haseltine, and J. B. Rawlings, J. Chem. Phys. 127, 094106 (2007). 10.1063/1.2764480 (Pubitemid 47379102)
- (2007) Journal of Chemical Physics , vol.127 , Issue.9 , pp. 094106
- Mastny, E.A.¹ Haseltine, E.L.² Rawlings, J.B.³

35
- 0001601301
- 10.2307/3212214
- D. A. McQuarrie, J. Appl. Probab. 4, 413 (1967). 10.2307/3212214
- (1967) J. Appl. Probab. , vol.4 , pp. 413
- McQuarrie, D.A.¹

36
- 80455123841
- 10.1021/ja207408y
- . Dka and G. Lente, J. Am. Chem. Soc. 133, 17878 (2011). 10.1021/ja207408y
- (2011) J. Am. Chem. Soc. , vol.133 , pp. 17878
- Dka¹ Lente, G.²

37
- 0039235344
- 10.1021/j100111a029
- M. Frankowicz, M. Moreau, P. P. Szczesny, J. Tth, and L. Vicente, J. Phys. Chem. 97, 1891 (1993). 10.1021/j100111a029
- (1993) J. Phys. Chem. , vol.97 , pp. 1891
- Frankowicz, M.¹ Moreau, M.² Szczesny, P.P.³ Tth, J.⁴ Vicente, L.⁵

38
- 37749007724
- 10.1039/b711546f
- G. Lente, Phys. Chem. Chem. Phys. 9, 6134 (2007). 10.1039/b711546f
- (2007) Phys. Chem. Chem. Phys. , vol.9 , pp. 6134
- Lente, G.¹

39
- 0001455869
- 10.1063/1.1678692
- T. G. Kurtz, J. Chem. Phys. 57, 2976 (1972). 10.1063/1.1678692
- (1972) J. Chem. Phys. , vol.57 , pp. 2976
- Kurtz, T.G.¹

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