-
1
-
-
10644284599
-
Insight of host immune evasion mediated by two variants of group A Streptococcus Mac protein
-
Agniswamy, J., Lei, B., Musser, J. M. & Sun, P. D. (2004). Insight of host immune evasion mediated by two variants of group A Streptococcus Mac protein. J Biol Chem 279, 52789-52796
-
(2004)
J Biol Chem
, vol.279
, pp. 52789-52796
-
-
Agniswamy, J.1
Lei, B.2
Musser, J.M.3
Sun, P.D.4
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
32144432437
-
The SWISSMODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J. & Schwede, T. (2006). The SWISSMODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22, 195-201
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
4
-
-
9144257886
-
The Pfam protein families database
-
(Database issue)
-
Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S. & other authors (2004). The Pfam protein families database. Nucleic Acids Res 32 (Database issue), D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
-
5
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340, 783-795
-
(2004)
J Mol Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
6
-
-
0033214628
-
Heuristic approach to deriving models for gene finding
-
Besemer, J. & Borodovsky, M. (1999). Heuristic approach to deriving models for gene finding. Nucleic Acids Res 27, 3911-3920
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3911-3920
-
-
Besemer, J.1
Borodovsky, M.2
-
7
-
-
4644320511
-
Comparison between Haemophilus parasuis infection in colostrums-deprived and sow-reared piglets
-
Blanco, I., Galina-Pantoja, L., Oliveira, S., Pijoan, C., Sánchez, C. & Canals, A. (2004). Comparison between Haemophilus parasuis infection in colostrums-deprived and sow-reared piglets. VetMicrobiol 103, 21-27
-
(2004)
VetMicrobiol
, vol.103
, pp. 21-27
-
-
Blanco, I.1
Galina-Pantoja, L.2
Oliveira, S.3
Pijoan, C.4
Sánchez, C.5
Canals, A.6
-
8
-
-
4844230028
-
Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis
-
Brunelle, B. W., Nicholson, T. L. & Stephens, R. S. (2004). Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis. Genome Biol 5, R42.
-
(2004)
Genome Biol
, vol.5
-
-
Brunelle, B.W.1
Nicholson, T.L.2
Stephens, R.S.3
-
9
-
-
0022498009
-
Rapid microprocedure for isolating detergent-insoluble outer membrane proteins from Haemophilus species
-
Carlone, G. M., Thomas, M. L., Rumschlag, H. S. & Sottnek, F. O. (1986). Rapid microprocedure for isolating detergent-insoluble outer membrane proteins from Haemophilus species. J Clin Microbiol 24, 330-332
-
(1986)
J Clin Microbiol
, vol.24
, pp. 330-332
-
-
Carlone, G.M.1
Thomas, M.L.2
Rumschlag, H.S.3
Sottnek, F.O.4
-
10
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17, 540-552
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
11
-
-
48249102000
-
Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
-
Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J. F., Guindon, S., Lefort, V. & other authors (2008). Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36 (Web Server issue), W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.Web Server issue
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
Dufayard, J.F.7
Guindon, S.8
Lefort, V.9
-
12
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
0031978181
-
Base-calling of automated sequencer traces using phred
-
Ewing, B. & Green, P. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8, 186-194
-
(1998)
II Error probabilities Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
14
-
-
0031955518
-
Base-calling of automated sequencer traces using phred
-
Ewing, B., Hillier, L., Wendl, M. C. & Green, P. (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8, 175-185
-
(1998)
I. Accuracy assessment Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
15
-
-
28944433798
-
Insights on biology and evolution from microbial genome sequencing
-
Fraser-Liggett, C. M. (2005). Insights on biology and evolution from microbial genome sequencing. Genome Res 15, 1603-1610
-
(2005)
Genome Res
, vol.15
, pp. 1603-1610
-
-
Fraser-Liggett, C.M.1
-
16
-
-
15844431346
-
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
-
Gardy, J. L., Laird, M. R., Chen, F., Rey, S., Walsh, C. J., Ester, M. & Brinkman, F. S. L. (2005). PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21, 617-623
-
(2005)
Bioinformatics
, vol.21
, pp. 617-623
-
-
Gardy, J.L.1
Laird, M.R.2
Chen, F.3
Rey, S.4
Walsh, C.J.5
Ester, M.6
Brinkman, F.S.L.7
-
17
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C. & Green, P. (1998). Consed: a graphical tool for sequence finishing. Genome Res 8, 195-202
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
18
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
19
-
-
0035111746
-
Virulence functions of autotransporter proteins
-
Henderson, I. R. & Nataro, J. P. (2001). Virulence functions of autotransporter proteins. Infect Immun 69, 1231-1243
-
(2001)
Infect Immun
, vol.69
, pp. 1231-1243
-
-
Henderson, I.R.1
Nataro, J.P.2
-
20
-
-
10344232466
-
Type V protein secretion pathway: The autotransporter story
-
Henderson, I. R., Navarro-Garcia, F., Desvaux, M., Fernandez, R. C. & Ala'Aldeen, D. (2004). Type V protein secretion pathway: the autotransporter story. Microbiol Mol Biol Rev 68, 692-744
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 692-744
-
-
Henderson, I.R.1
Navarro-Garcia, F.2
Desvaux, M.3
Fernandez, R.C.4
Ala'aldeen, D.5
-
21
-
-
60349086970
-
Prevalence and sequence variations of the genes encoding the five antigens included in the novel 5CVMB vaccine covering group B meningococcal disease
-
Jacobsson, S., Hedberg, S. T.,Mölling, P., Unemo,M., Comanducci,M., Rappuoli, R. & Olcén, P. (2009). Prevalence and sequence variations of the genes encoding the five antigens included in the novel 5CVMB vaccine covering group B meningococcal disease. Vaccine 27, 1579-1584
-
(2009)
Vaccine
, vol.27
, pp. 1579-1584
-
-
Jacobsson, S.1
Hedberg, S.2
Mölling, P.3
Rappuoli, R.4
Olcén, P.5
-
22
-
-
33745697839
-
The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium
-
Lee, J. W., Lee, S. Y., Song, H. & Yoo, J. S. (2006). The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium. Proteomics 6, 3550-3566
-
(2006)
Proteomics
, vol.6
, pp. 3550-3566
-
-
Lee, J.W.1
Lee, S.Y.2
Song, H.3
Yoo, J.S.4
-
23
-
-
9244255314
-
The C-terminal fragment of the internal 110-kilodalton passenger domain of the Hap protein of nontypeable Haemophilus influenzae is a potential vaccine candidate
-
Liu, D.-F.,Mason, K.W.,Mastri,&fname&M&/fname&., &sname&Pazirandeh&/sname&,&fname&M&/fname&., Cutter, D., Fink, D. L., Geme, J. W., Zhu, D. & Green, B. A. (2004). The C-terminal fragment of the internal 110-kilodalton passenger domain of the Hap protein of nontypeable Haemophilus influenzae is a potential vaccine candidate. Infect Immun 72, 6961-6968
-
(2004)
Infect Immun
, vol.72
, pp. 6961-6968
-
-
Liu, D.-F.1
-
24
-
-
26444496661
-
The silencing of pseudogenes
-
Mira, A. & Pushker, R. (2005). The silencing of pseudogenes. Mol Biol Evol 22, 2135-2138
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2135-2138
-
-
Mira, A.1
Pushker, R.2
-
25
-
-
33646523835
-
The Neolithic revolution of bacterial genomes
-
Mira, A., Pushker, R. & Rodríguez-Valera, F. (2006). The Neolithic revolution of bacterial genomes. Trends Microbiol 14, 200-206
-
(2006)
Trends Microbiol
, vol.14
, pp. 200-206
-
-
Mira, A.1
Pushker, R.2
Rodríguez-Valera, F.3
-
26
-
-
67651122978
-
AasP autotransporter protein of Actinobacillus pleuropneumoniae does not protect pigs against homologous challenge
-
Oldfield, N. J., Worrall, K. E., Rycroft, A. N., Ali, T., Wooldridge, K. G. & Ala'Aldeen, D. A. (2009). AasP autotransporter protein of Actinobacillus pleuropneumoniae does not protect pigs against homologous challenge. Vaccine 27, 5278-5283
-
(2009)
Vaccine
, vol.27
, pp. 5278-5283
-
-
Oldfield, N.J.1
Worrall, K.E.2
Rycroft, A.N.3
Ali, T.4
Wooldridge, K.G.5
Ala'aldeen, D.A.6
-
27
-
-
77649134505
-
Virulence-associated trimeric autotransporters of Haemophilus parasuis are antigenic proteins expressed in vivo
-
Olvera, A., Pina, S., Pérez-Simó, M., Oliveira, S. & Bensaid, A. (2010). Virulence-associated trimeric autotransporters of Haemophilus parasuis are antigenic proteins expressed in vivo. Vet Res 41, 26.
-
(2010)
Vet Res
, vol.41
, pp. 26
-
-
Olvera, A.1
Pina, S.2
Pérez-Simó, M.3
Oliveira, S.4
Bensaid, A.5
-
28
-
-
0242291971
-
Genomic analysis of secretion systems
-
Pallen, M. J., Chaudhuri, R. R. & Henderson, I. R. (2003). Genomic analysis of secretion systems. Curr Opin Microbiol 6, 519-527
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 519-527
-
-
Pallen, M.J.1
Chaudhuri, R.R.2
Henderson, I.R.3
-
29
-
-
58649109372
-
Trimeric autotransporters of Haemophilus parasuis: Generation of an extensive passenger domain repertoire specific for pathogenic strains
-
Pina, S., Olvera, A., Barceló, A. & Bensaid, A. (2009). Trimeric autotransporters of Haemophilus parasuis: generation of an extensive passenger domain repertoire specific for pathogenic strains. J Bacteriol 191, 576-587
-
(2009)
J Bacteriol
, vol.191
, pp. 576-587
-
-
Pina, S.1
Olvera, A.2
Barceló, A.3
Bensaid, A.4
-
30
-
-
0000521732
-
Haemophilus parasuis
-
Edited by B. E. Straw, J. J. Zimmerman, S. D'Allaire & D. J. Taylor. Oxford: Blackwell Publishing
-
Rapp-Gabrielson, V. J., Oliveira, S. R. & Pijoan, C. (2006). Haemophilus parasuis. In Diseases of Swine, 9th edn, pp. 681-690 Edited by B. E. Straw, J. J. Zimmerman, S. D'Allaire & D. J. Taylor. Oxford: Blackwell Publishing.
-
(2006)
In Diseases of Swine
, pp. 681-690
-
-
Rapp-Gabrielson, V.J.1
Oliveira, S.R.2
Pijoan, C.3
-
32
-
-
0038752613
-
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
-
Read, T. D., Peterson, S. N., Tourasse, N., Baillie, L. W., Paulsen, I. T., Nelson, K. E., Tettelin, H., Fouts, D. E., Eisen, J. A. & other authors (2003). The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature 423, 81-86
-
(2003)
Nature
, vol.423
, pp. 81-86
-
-
Read, T.D.1
Peterson, S.N.2
Tourasse, N.3
Baillie, L.W.4
Paulsen, I.T.5
Nelson, K.E.6
Tettelin, H.7
Fouts, D.E.8
Eisen, J.A.9
-
33
-
-
0034687702
-
A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
-
Salama, N., Guillemin, K., McDaniel, T. K., Sherlock, G., Tompkins, L. & Falkow, S. (2000). A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci U S A 97, 14668-14673
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 14668-14673
-
-
Salama, N.1
Guillemin, K.2
McDaniel, T.K.3
Sherlock, G.4
Tompkins, L.5
Falkow, S.6
-
34
-
-
0031574072
-
The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
36
-
-
34547857405
-
Autotransporter proteins: Novel targets at the bacterial cell surface
-
Wells, T. J., Tree, J. J., Ulett, G. C. & Schembri, M. A. (2007). Autotransporter proteins: novel targets at the bacterial cell surface. FEMS Microbiol Lett 274, 163-172
-
(2007)
FEMS Microbiol Lett
, vol.274
, pp. 163-172
-
-
Wells, T.J.1
Tree, J.J.2
Ulett, G.C.3
Schembri, M.A.4
-
37
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu, D., Hugenholtz, P., Mavromatis, K., Pukall, R., Dalin, E., Ivanova, N. N., Kunin, V., Goodwin, L., Wu, M. & other authors (2009). A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462, 1056-1060
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
-
38
-
-
79956068799
-
Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China
-
Xu, Z., Yue, M., Zhou, R., Jin, Q., Fan, Y., Bei, W. & Chen, H. (2011). Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China. PLoS ONE 6, e19631.
-
(2011)
PLoS ONE
, vol.6
-
-
Xu, Z.1
Yue, M.2
Zhou, R.3
Jin, Q.4
Fan, Y.5
Bei, W.6
Chen, H.7
-
39
-
-
60849128509
-
Complete genome sequence of Haemophilus parasuis SH0165
-
Yue, M., Yang, F., Yang, J., Bei, W., Cai, X., Chen, L., Dong, J., Zhou, R., Jin, M. & other authors (2009). Complete genome sequence of Haemophilus parasuis SH0165. J Bacteriol 191, 1359-1360
-
(2009)
J Bacteriol
, vol.191
, pp. 1359-1360
-
-
Yue, M.1
Yang, F.2
Yang, J.3
Bei, W.4
Cai, X.5
Chen, L.6
Dong, J.7
Zhou, R.8
Jin, M.9
-
40
-
-
67651087398
-
Identification and characterization of novel immunogenic outer membrane proteins of Haemophilus parasuis serovar 5
-
Zhou, M., Guo, Y., Zhao, J., Hu, Q., Hu, Y., Zhang, A., Chen, H. & Jin, M. (2009a). Identification and characterization of novel immunogenic outer membrane proteins of Haemophilus parasuis serovar 5. Vaccine 27, 5271-5277
-
(2009)
Vaccine
, vol.27
, pp. 5271-5277
-
-
Zhou, M.1
Guo, Y.2
Zhao, J.3
Hu, Q.4
Hu, Y.5
Zhang, A.6
Chen, H.7
Jin, M.8
-
41
-
-
66449136572
-
A comprehensive proteome map of the Haemophilus parasuis serovar 5
-
Zhou, M., Zhang, A., Guo, Y., Liao, Y., Chen, H. & Jin, M. (2009b). A comprehensive proteome map of the Haemophilus parasuis serovar 5. Proteomics 9, 2722-2739.
-
(2009)
Proteomics
, vol.9
, pp. 2722-2739
-
-
Zhou, M.1
Zhang, A.2
Guo, Y.3
Liao, Y.4
Chen, H.5
Jin, M.6
|