Polymorphism and methylation patterns in Agave tequilana Weber var. 'Azul' plants propagated asexually by three different methods

Plant Science

Volumn 185-186, Issue , 2012, Pages 321-330

  Díaz Martínez, Miriam ^a   Nava Cedillo, Alejandro ^b   Guzmán López, José Alfredo ^a   Escobar Guzmán, Rocío ^a   Simpson, June ^a  

^a DEPARTAMENTO DE FÍSICA   (Mexico)

^b Instituto Tecnológico Agropecuario de Aguascalientes Aguascalientes   (Mexico)

Author keywords

AFLP; Agave tequilana; Asexual reproduction; In vitro culture; MSAP; Somaclonal variation; Transposable element ESTs

Indexed keywords

PLANT DNA; TRANSCRIPTOME;

AGAVE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ASEXUAL REPRODUCTION; CHEMISTRY; CHROMOSOME MAP; DNA METHYLATION; GENE EXPRESSION; GENETIC POLYMORPHISM; GENETICS; GROWTH, DEVELOPMENT AND AGING; ORGANOGENESIS; PHENOTYPE; PLANT LEAF; TRANSPOSON;

AGAVE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CHROMOSOME MAPPING; DNA METHYLATION; DNA TRANSPOSABLE ELEMENTS; DNA, PLANT; GENE EXPRESSION; ORGANOGENESIS; PHENOTYPE; PLANT LEAVES; POLYMORPHISM, GENETIC; REPRODUCTION, ASEXUAL; TRANSCRIPTOME;

AGAVE TEQUILANA;

EID: 84856669439     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2012.01.004     Document Type: Article

References (50)

1. Gentry H.S. Agaves of Continental North America 1982, University of Arizona Press, Tucson.
2. Escobar-Guzmán R., Zamudio-hernández F., Gil-Vega K., Simpson J. Seed production gametophyte formation in Agave tequilana and Agave Americana. Botany 2008, 86:1343-1353.
3. Valenzuela A. A new agenda for blue agave landraces: food, energy and tequila. GCB Bioenergy 2011, 3:15-24.
4. Robert M.L., Herrera J.L., Contreras F., Scorer K.N. Invitro-propagation of Agave-Fourcroydes Lem (Henequen). Plant Cell Tiss. Org. 1987, 8:37-48.
5. Robert M.L., Herrera-Herrera J.L., Castillo E., Ojeda G., Herrera-Alamillo M.A. An efficient method for the micropropagation of Agave species. Methods Mol. Biol. 2006, 318:165-178.
6. Valenzuela-Sanchez K.K., Juarez-Hernandez R.E., Cruz-Hernandez A., Olalde-Portugal V., Valverde M.E., Paredes-Lopez O. Plant regeneration of Agave tequilana by indirect organogenesis. In Vitro Cell Dev.-Pl 2006, 42:336-340.
7. Portillo L., Santacruz-Ruvalcaba F., Gutierrez-Mora A., Rodriguez-Garay B. Somatic embryogenesis in Agave tequilana Weber cultivar azul. In Vitro Cell Dev.-Pl 2007, 43:569-575.
8. Rodriguez-Sahagun A., Acevedo-Hernandez G., Rodriguez-Dominguez J.M., Rodriguez-Garay B., Cervantes-Martinez J., Castellanos-Hernandez O.A. Effect of light quality and culture medium on somatic embryogenesis of Agave tequilana Weber var. Azul. Plant Cell Tiss. Org. 2011, 104:271-275.
9. Santacruz-Ruvalcaba F., Portillo L. Thin cell suspension layer as a new methodology for somatic embryogenesis in Agave tequilana Weber cultivar azul. Ind. Crop Prod. 2009, 29:609-614.
10. Abraham-Juarez M.J., Martinez-Hernandez A., Leyva-Gonzalez M.A., Herrera-Estrella L., Simpson J. Class I KNOX genes are associated with organogenesis during bulbil formation in Agave tequilana. J. Exp. Bot. 2010.
11. Gil-Vega K., Diaz C., Nava-Cedillo A., Simpson J. AFLP analysis of Agave tequilana varieties. Plant Sci. 2006, 170:904-909.
12. Infante D., Gonzalez G., Peraza-Echeverria L., Keb-Llanes M. Asexual genetic variability in Agave fourcroydes. Plant Sci. 2003, 164:223-230.
13. Infante D., Molina S., Demey J.R., Gamez E. Asexual genetic variability in Agavaceae determined with inverse sequence-tagged repeats and amplification fragment length polymorphism analysis. Plant Mol. Biol. Rep. 2006, 24:205-217.
14. Rodriguez-Garay B., Lomeli-Sencion J.A., Tapia-Campos E., Gutierrez-Mora A., Garcia-Galindo J., Rodriguez-Dominguez J.M., Urbina-Lopez D., Vicente-Ramirez I. Morphological and molecular diversity of Agave tequilana Weber var. Azul and Agave angustifolia Haw. var. Lineno. Ind. Crop Prod. 2009, 29:220-228.
15. Vargas-Ponce O., Zizumbo-Villarreal D., Colunga-GarciaMartin P. In situ diversity and maintenance of traditional Agave landraces used in spirits production in west-central Mexico. Econ. Bot. 2007, 61:362-375.
16. Vargas-Ponce O., Zizumbo-Villarreal D., Martinez-Castillo J., Coello-Coello J., Marin P.C.G. Diversity and structure of landraces of agave grown for spirits under traditional agriculture: a comparison with wild populations of A. Angustifolia (Agavaceae) and commercial plantations of A. Tequilana. Am. J. Bot. 2009, 96:448-457.
17. Simpson J., Abraham-Juarez M.J., Ramirez-Malagon R., Gil-Vega K.D. Aflp analysis of genetic variability in three reproductive forms of Agave Tequilana. Rev. Fitotec Mex. 2009, 32:171-175.
18. Gonzalez G., Aleman S., Infante D. Asexual genetic variability in Agave fourcroydes II: selection among individuals in a clonally propagated population. Plant Sci. 2003, 165:595-601.
19. Torres-Moran M.I., Escoto-Delgadillo M., Molina-Moret S., Rivera-Rodriguez D.M., Velasco-Ramirez A.P., Infante D., Portillo L. Assessment of genetic fidelity among Agave tequilana plants propagated asexually via rhizomes versus in vitro culture. Plant Cell Tiss. Org. 2010, 103:403-409.
20. Etienne H., Bertrand B. Somaclonal variation in Coffea arabica: effects of genotype and embryogenic cell suspension age on frequency and phenotype of variants. Tree Physiol. 2003, 23:419-426.
21. Priyono, Florin B., Rigoreau M., Ducos J.P., Sumirat U., Mawardi S., Lambot C., Broun P., Petiard V., Wahyudi T., Crouzillat D. Somatic embryogenesis and vegetative cutting capacity are under distinct genetic control in Coffea canephora Pierre. Plant Cell Rep. 2010, 29:343-357.
22. Thirugnanakumar S., Rajeswari S., Anandan A., Krishnamurthi M. Somaclonal variation in sugarcane through tissue culture and evaluation for quantitative and quality traits. Euphytica 2009, 168:71-80.
23. Joshi R.K., Rao G.J.N. Somaclonal variation in submergence tolerant rice cultivars and induced diversity evaluation by PCR markers. Inter. J. Genet. Mol. Biol. 2009, 1:80-88.
24. Biswas M.K., Dutt M., Roy U.K., Islam R., Hossain M. Development and evaluation of in vitro somaclonal variation in strawberry for improved horticultural traits. Sci. Horti.-Amsterdam 2009, 122:409-416.
25. Miguel C., Marum L. An epigenetic view of plant cells cultured in vitro: somaclonal variation and beyond. J. Exp. Bot. 2011.
26. Zhang M.S., Yan H.Y., Zhao N., Lin X.Y., Pang J.S., Xu K.Z., Liu L.X., Liu B. Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids. Theor. Appl. Genet. 2007, 115:195-207.
27. Wang H.Y., Tian Q., Ma Y.Q., Wu Y., Miao G.J., Ma Y., Cao D.H., Wang X.L., Lin C., Pang J., Liu B. Transpositional reactivation of two LTR retrotransposons in rice-Zizania recombinant inbred lines (RILs). Hereditas 2010, 147:264-277.
28. Vicient C.M. Transcriptional activity of transposable elements in maize. BMC Genomics 2010, 11:601.
29. Edwards K. Miniprep procedures for the isolation of plant DNA. Molecular Tools for Screening Biodiversity 2000, 22-23. Kluwer Academic Publisher, Dordrecht. A. Karp, P.G. Isaac, D.S. Ingram (Eds.).
30. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23:4407-4414.
31. Jaccard P. Nouvelles recherches sur la distribution florale. Bull. de la Soc. Vaudoise du Sci. Nat. 1908, 44:223-270.
32. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A. 1979, 76:5269-5273.
33. Felsenstein J. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 1985, 39:783-791.
34. Newbury H.J., Howell E.C., Crouch J.H., Ford-Lloyd B.V. Natural and culture-induced genetic variation in plantains (Musa spp. AAB group). Aust. J. Bot. 2000, 48:493-500.
35. Reyna-Lopez G.E., Simpson J., Ruiz-Herrera J. Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol. Gen. Genet. 1997, 253:703-710.
36. Baurens F.C., Nicolleau J., Legavre T., Verdeil J.L., Monteuuis O. Genomic DNA methylation of juvenile and mature Acacia mangium micropropagated in vitro with reference to leaf morphology as a phase change marker. Tree Physiol. 2004, 24:401-407.
37. Palomino G., Dolezel J., Mendez I., Rubluo A. Nuclear genome size analysis of Agave tequilana Weber. Caryologia 2003, 56:37-46.
38. Abraham-Juarez M.J., Ramirez-Malagon R., Gil-Vega K.D., Simpson J. Aflp analysis of genetic variability in three reproductive forms of Agave Tequilana. Rev. Fitotec Mex. 2009, 32:171-175.
39. Kaeppler S.M., Phillips R.L. Tissue culture-induced DNA methylation variation in maize. Proc. Natl. Acad. Sci. U.S.A. 1993, 90:8773-8776.
40. Kaeppler S.M., Phillips R.L. DNA methylation and tissue culture-induced variation in plants. In Vitro Cell Dev-Pl 1993, 29P:125-130.
41. Phillips R.L., Kaeppler S.M., Olhoft P. Genetic instability of plant-tissue cultures - breakdown of normal controls. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:5222-5226.
42. Cervera M.T., Ruiz-Garcia L., Martinez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol. Genet. Genomics 2002, 268:543-552.
43. Gao X.A., Yang D., Cao D.H., Ao M., Sui X., Wang Q.M., Kimatu J.N., Wang L. In vitro micropropagation of freesia hybrida and the assessment of genetic and epigenetic stability in regenerated plantlets. J. Plant Growth Regul. 2010, 29:257-267.
44. Fiuk A., Bednarek P.T., Rybczynski J.J., Flow Cytometry HPLC-RP, and metAFLP analyses to assess genetic variability in somatic embryo-derived plantlets of gentiana pannonica scop. Plant Mol. Biol. Rep. 2010, 28:413-420.
45. Baurens F.C., Bonnot F., Bienvenu D., Causse S., Legavre T. Using SD-AFLP and MSAP to assess CCGG methylation in the banana genome. Plant Mol. Biol. Rep. 2003, 21:339-348.
46. Peraza-Echeverria S., Herrera-Valencia V.A., Kay A. Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP). Plant Sci. 2001, 161:359-367.
47. Bennetzen J.L. Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 2000, 42:251-269.
48. Li H., Freeling M., Lisch D. Epigenetic reprogramming during vegetative phase change in maize. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:22184-22189.
49. Delgado-Sandoval S.C., Abraham-Juárez M.J., Simpson J. Agave tequilana MADS genes show novel expression patterns in meristems, developing bulbils and floral organs Sex. Plant Reprod. 2012, 10.1007/s00497-011-0176-x.
50. Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 2010, 11:204-220.