-
1
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R.L., Natale, D.A., Garkavtsev, I.V., Tatusova, T.A., Shankavaram, U.T., Rao, B.S., Kiryutin, B, Galperin, M.Y., Fedorova, N.D., Koonin, E.V., The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:1 (2001), 22–28.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
2
-
-
0033150942
-
From protein sequence to function
-
Danchin, A, From protein sequence to function. Curr. Opin. Struct. Biol. 9:3 (1999), 363–367.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, Issue.3
, pp. 363-367
-
-
Danchin, A.1
-
3
-
-
0031764044
-
Indigo: a world-wide-web review of genomes and gene functions
-
Nitschké, P, Guerdoux-Jamet, P, Chiapello, H, Faroux, G, Hénaut, C, Hénaut, A, Danchin, A, Indigo: a world-wide-web review of genomes and gene functions. FEMS Microbiol. Rev. 22:4 (1998), 207–227.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, Issue.4
, pp. 207-227
-
-
Nitschké, P.1
Guerdoux-Jamet, P.2
Chiapello, H.3
Faroux, G.4
Hénaut, C.5
Hénaut, A.6
Danchin, A.7
-
4
-
-
0037148779
-
De novo pyrimidine biosynthesis is required for virulence of Toxoplasma gondii
-
Fox, B, Bzik, D, De novo pyrimidine biosynthesis is required for virulence of Toxoplasma gondii. Nature 415 (2002), 926–929.
-
(2002)
Nature
, vol.415
, pp. 926-929
-
-
Fox, B.1
Bzik, D.2
-
5
-
-
0025214461
-
Ribonucleotide reductases: amazing and confusing
-
Stubbe, J, Ribonucleotide reductases: amazing and confusing. J. Biol. Chem. 265:10 (1990), 5329–5332.
-
(1990)
J. Biol. Chem.
, vol.265
, Issue.10
, pp. 5329-5332
-
-
Stubbe, J.1
-
6
-
-
0034284380
-
RNA-binding characteristics of the chloroplast S1-like ribosomal protein CS1
-
Shteiman-Kotler, A, Schuster, G, RNA-binding characteristics of the chloroplast S1-like ribosomal protein CS1. Nucleic Acids Res. 28:17 (2000), 3310–3315.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.17
, pp. 3310-3315
-
-
Shteiman-Kotler, A.1
Schuster, G.2
-
7
-
-
0033804312
-
A novel nucleic acid-binding protein in the cyanobacterium Synechococcus sp. PCC6301: a soluble 33-kDa polypeptide with high sequence similarity to ribosomal protein S1
-
Sugita, C, Sugiura, M, Sugita, M, A novel nucleic acid-binding protein in the cyanobacterium Synechococcus sp. PCC6301: a soluble 33-kDa polypeptide with high sequence similarity to ribosomal protein S1. Mol. Gen. Genet. 263:4 (2000), 655–663.
-
(2000)
Mol. Gen. Genet.
, vol.263
, Issue.4
, pp. 655-663
-
-
Sugita, C.1
Sugiura, M.2
Sugita, M.3
-
8
-
-
0035422828
-
Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1
-
Boni, I.V., Artamonova, V.S., Tzareva, N.V., Dreyfus, M, Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1. EMBO J. 20:15 (2001), 4222–4232.
-
(2001)
EMBO J.
, vol.20
, Issue.15
, pp. 4222-4232
-
-
Boni, I.V.1
Artamonova, V.S.2
Tzareva, N.V.3
Dreyfus, M.4
-
9
-
-
0035943737
-
Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E
-
Feng, Y, Huang, H, Liao, J, Cohen, S.N., Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E. J. Biol. Chem. 276:34 (2001), 31651–31656.
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.34
, pp. 31651-31656
-
-
Feng, Y.1
Huang, H.2
Liao, J.3
Cohen, S.N.4
-
10
-
-
0344936574
-
Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes
-
Hénaut, A, Lisacek, F, Nitschké, P, Moszer, I, Danchin, A, Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes. Electrophoresis 19:4 (1998), 515–527.
-
(1998)
Electrophoresis
, vol.19
, Issue.4
, pp. 515-527
-
-
Hénaut, A.1
Lisacek, F.2
Nitschké, P.3
Moszer, I.4
Danchin, A.5
-
11
-
-
0035933316
-
Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA
-
Herr, A.J., Nelson, C.C., Wills, N.M., Gesteland, R.F., Atkins, J.F., Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA. J. Mol. Biol. 309:5 (2001), 1029–1048.
-
(2001)
J. Mol. Biol.
, vol.309
, Issue.5
, pp. 1029-1048
-
-
Herr, A.J.1
Nelson, C.C.2
Wills, N.M.3
Gesteland, R.F.4
Atkins, J.F.5
-
12
-
-
0031588599
-
Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP
-
Danchin, A, Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP. DNA Res. 4:1 (1997), 9–18.
-
(1997)
DNA Res.
, vol.4
, Issue.1
, pp. 9-18
-
-
Danchin, A.1
-
13
-
-
0025249918
-
Sustained increase in 1,2-diacylglycerol precedes DNA synthesis in epidermal-growth-factor-stimulated fibroblasts. Evidence for stimulated phosphatidylcholine hydrolysis
-
Wright, T.M., Shin, H.S., Raben, D.M., Sustained increase in 1,2-diacylglycerol precedes DNA synthesis in epidermal-growth-factor-stimulated fibroblasts. Evidence for stimulated phosphatidylcholine hydrolysis. Biochem. J. 267:2 (1990), 501–507.
-
(1990)
Biochem. J.
, vol.267
, Issue.2
, pp. 501-507
-
-
Wright, T.M.1
Shin, H.S.2
Raben, D.M.3
-
14
-
-
0019130455
-
Apparent coordination of the biosynthesis of lipids in cultured cells: its relationship to the regulation of the membrane sterol:phospholipid ratio and cell cycling
-
Cornell, R.B., Horwitz, A.F., Apparent coordination of the biosynthesis of lipids in cultured cells: its relationship to the regulation of the membrane sterol:phospholipid ratio and cell cycling. J. Cell Biol. 86:3 (1980), 810–819.
-
(1980)
J. Cell Biol.
, vol.86
, Issue.3
, pp. 810-819
-
-
Cornell, R.B.1
Horwitz, A.F.2
-
15
-
-
0028146621
-
Coordination of membrane phospholipid synthesis with the cell cycle
-
Jackowski, S, Coordination of membrane phospholipid synthesis with the cell cycle. J. Biol. Chem. 269 (1994), 3858–3867.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 3858-3867
-
-
Jackowski, S.1
-
16
-
-
0028953772
-
Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP
-
Serina, L, Blondin, C, Krin, E, Sismeiro, O, Danchin, A, Sakamoto, H, Gilles, A.M., Barzu, O, Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP. Biochemistry 34 (1995), 5066–5074.
-
(1995)
Biochemistry
, vol.34
, pp. 5066-5074
-
-
Serina, L.1
Blondin, C.2
Krin, E.3
Sismeiro, O.4
Danchin, A.5
Sakamoto, H.6
Gilles, A.M.7
Barzu, O.8
-
17
-
-
0033991926
-
The pyrH gene of Lactococcus lactis subsp. cremoris encoding UMP kinase is transcribed as part of an operon including the frr1 gene encoding ribosomal recycling factor 1
-
Wadskov-Hansen, S.L, Martinussen, J, Hammer, K, The pyrH gene of Lactococcus lactis subsp. cremoris encoding UMP kinase is transcribed as part of an operon including the frr1 gene encoding ribosomal recycling factor 1. Gene 241:1 (2000), 157–166.
-
(2000)
Gene
, vol.241
, Issue.1
, pp. 157-166
-
-
Wadskov-Hansen, S.L.1
Martinussen, J.2
Hammer, K.3
-
18
-
-
0037066743
-
Targeting, insertion, and localization of Escherichia coli YidC
-
Urbanus, M.L., Froderberg, L, Drew, D, Bjork, P, de Gier, J.W., Brunner, J, Oudega, B, Luirink, J, Targeting, insertion, and localization of Escherichia coli YidC. J. Biol. Chem. 277:15 (2002), 12718–12723.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.15
, pp. 12718-12723
-
-
Urbanus, M.L.1
Froderberg, L.2
Drew, D.3
Bjork, P.4
de Gier, J.W.5
Brunner, J.6
Oudega, B.7
Luirink, J.8
-
19
-
-
0037197678
-
SecA specificity for different signal peptides
-
Kebir, M.O., Kendall, D.A., SecA specificity for different signal peptides. Biochemistry 41:17 (2002), 5573–5580.
-
(2002)
Biochemistry
, vol.41
, Issue.17
, pp. 5573-5580
-
-
Kebir, M.O.1
Kendall, D.A.2
-
20
-
-
0032916705
-
Immunochemical analysis of UMP kinase from Escherichia coli
-
Landais, S, Gounon, P, Laurent-Winter, C, Mazié, J.C, Danchin, A, Barzu, O, Sakamoto, H, Immunochemical analysis of UMP kinase from Escherichia coli. J. Bacteriol. 181:3 (1999), 833–840.
-
(1999)
J. Bacteriol.
, vol.181
, Issue.3
, pp. 833-840
-
-
Landais, S.1
Gounon, P.2
Laurent-Winter, C.3
Mazié, J.C.4
Danchin, A.5
Barzu, O.6
Sakamoto, H.7
-
21
-
-
0035581084
-
Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR
-
Bonner, E.R., D'Elia, J.N, Billips, B.K., Switzer, R.L., Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR. Nucleic Acids Res. 29:23 (2001), 4851–4865.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.23
, pp. 4851-4865
-
-
Bonner, E.R.1
D'Elia, J.N.2
Billips, B.K.3
Switzer, R.L.4
-
22
-
-
0023752060
-
Role of the ribosome in suppressing transcriptional termination at the pyrBI attenuator of Escherichia coli K-12
-
Roland, K.L., Liu, C.G., Turnbough, C.L Jr., Role of the ribosome in suppressing transcriptional termination at the pyrBI attenuator of Escherichia coli K-12. Proc. Natl. Acad. Sci. U. S. A. 85:19 (1988), 7149–7153.
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, Issue.19
, pp. 7149-7153
-
-
Roland, K.L.1
Liu, C.G.2
Turnbough, C.L.3
-
23
-
-
0036606915
-
Base composition bias in genomes might result from competition for scarce metabolic resources
-
Rocha, E.P.C, Danchin, A, Base composition bias in genomes might result from competition for scarce metabolic resources. Trends Genet. 18 (2002), 291–294.
-
(2002)
Trends Genet.
, vol.18
, pp. 291-294
-
-
Rocha, E.P.C.1
Danchin, A.2
-
24
-
-
0031592733
-
Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?
-
Guerdoux-Jamet, P, Hénaut, A, Nitschké, P, Risler, J.L., Danchin, A, Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?. DNA Res. 4:4 (1997), 257–265.
-
(1997)
DNA Res.
, vol.4
, Issue.4
, pp. 257-265
-
-
Guerdoux-Jamet, P.1
Hénaut, A.2
Nitschké, P.3
Risler, J.L.4
Danchin, A.5
-
25
-
-
0034959718
-
Reconstitution of Sec-dependent membrane protein insertion: nascent FtsQ interacts with YidC in a SecYEG-dependent manner
-
van der Laan, M, Houben, E.N., Nouwen, N, Luirink, J, Driessen, A.J., Reconstitution of Sec-dependent membrane protein insertion: nascent FtsQ interacts with YidC in a SecYEG-dependent manner. EMBO Rep. 2:6 (2001), 519–523.
-
(2001)
EMBO Rep.
, vol.2
, Issue.6
, pp. 519-523
-
-
van der Laan, M.1
Houben, E.N.2
Nouwen, N.3
Luirink, J.4
Driessen, A.J.5
-
26
-
-
0035685975
-
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
-
Barker, M.M., Gourse, R.L., Regulation of rRNA transcription correlates with nucleoside triphosphate sensing. J. Bacteriol. 183:21 (2001), 6315–6323.
-
(2001)
J. Bacteriol.
, vol.183
, Issue.21
, pp. 6315-6323
-
-
Barker, M.M.1
Gourse, R.L.2
-
27
-
-
0034733815
-
Sulphur islands in the Escherichia coli genome: markers of the cell's architecture?
-
Rocha, E.P., Sekowska, A, Danchin, A, Sulphur islands in the Escherichia coli genome: markers of the cell's architecture?. FEBS Lett. 476:1–2 (2000), 8–11.
-
(2000)
FEBS Lett.
, vol.476
, Issue.1-2
, pp. 8-11
-
-
Rocha, E.P.1
Sekowska, A.2
Danchin, A.3
-
28
-
-
0031735563
-
The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in Gram-positive bacteria
-
Grundy, F.J., Henkin, T.M., The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in Gram-positive bacteria. Mol. Microbiol. 30:4 (1998), 737–749.
-
(1998)
Mol. Microbiol.
, vol.30
, Issue.4
, pp. 737-749
-
-
Grundy, F.J.1
Henkin, T.M.2
-
29
-
-
19044362589
-
The methionine salvage pathway in Bacillus subtilis
-
Sekowska, A, Danchin, A, The methionine salvage pathway in Bacillus subtilis. BMC Microbiol., 2, 2002, 8.
-
(2002)
BMC Microbiol.
, vol.2
, pp. 8
-
-
Sekowska, A.1
Danchin, A.2
|