Measurement of the number of molecules of a single mRNA species in a complex mRNA preparation

Journal of Theoretical Biology

Volumn 221, Issue 4, 2003, Pages 615-624

  Hug, Hubert ^a   Schuler, Rainer ^b  

^a UNIVERSITY HOSPITAL ULM   (Germany)

^b UNIVERSITY OF ULM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

RNA;

ARTICLE; DNA MICROARRAY; GENE EXPRESSION PROFILING; MOLECULAR BIOLOGY; MOLECULAR CLONING; MOLECULE; PRIORITY JOURNAL; PROTEIN EXPRESSION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS;

EID: 0037459897     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.2003.3211     Document Type: Article

References (17)

1. ADLEMAN L. Molecular computation of solutions to combinatorial problems. Science. 266:1994;1021-1024.
2. AUSUBEL F., BRENT R., KINGSTON R., MOORE D., SEIDMAN J., SMITH J., STRUHL K. Current Protocols in Molecular Biology. 2001;Wiley and Sons, New York.
3. BRAICH R., JOHNSON C., ROTHEMUND P. W. K., HWANG D., CHELYAPOF N., ADLEMAN L. Solution of a satisfiability problem on a gel-based DNA computer. Condon A. DNA 2000. 2054:2001;27-42 Springer Verlag, Berlin.
4. BRAICH R., CHELYAPOF N., JOHNSON C., ROTHEMUND P., ADLEMAN L. Solution of a 20-variable 3-SAT problem on a DNA computer. Science. 296:2002;499-502.
5. BRENNER S., JOHNSON M., BRIDGHAM J., GOLDA G., LLOYD D., JOHNSON D., LUO S., MCCURDY S., FOY M., EWAN M., ROTH R., GEORGE D., ELETR S., ALBRECHT G., VERMAAS E., WILLIAMS S., MOON K., BURCHAM T., PALLAS M., DUBRIDGE R., KIRCHNER J., FEARON K., MAO J., CORCORAN K. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol. 18:2000a;630-634.
6. BRENNER S., WILLIAMS S., VERMAAS E., STORCK T., MOON K., McCOLLUM C., MAO J., LUO S., KIRCHNER J., ELETR S., DUBRIDGE R., BURCHAM T., ALBRECHT G. In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNA's. Proc. Natl Acad. Sci. U.S.A. 97:2000b;1665-1670.
7. Chips, 2002, http:\\www.gene-chips.com.
8. GILLILAND G., PERRIN S., BLANCHARD K., BUNN H. Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction. Proc. Natl. Acad. Sci. U.S.A. 97:1990;2725-2729.
9. HOLLAS, B. SCHULER, R. 2002, A stochastic approach to count RNA molecules using DNA sequencing methods.
10. HSIAO L.-L., DANGOND F., YOSHIDA T., HONG R., JENSEN R. V., MISRA J., DILLON W., LEE K. F., CLARK K. E., HAVERTY P., WENG Z., MUTTER G. L., FROSCH M. P., MacDonald M. E., MILFORD E. L., CRUM C. P., BUENO R., PRATT R. E., MAHADEVAPPA M., WARRINGTON J. A., STEPHANOPOULOS G., STEPHANOPOULOS G., GULLANS S. R. A compendium of gene expression in normal human tissues. Physiol. Genomics. 7:2001;97-104.
11. MCCASKILL J. S. Optically programming DNA computing in microflow reactors. Biosystems. 59:2001;125-138.
12. MOTWANI R., RAGHAVAN P. Randomized Algorithms. 1995;Cambridge University Press, Cambridge.
13. SAMBROOK J., FRITSCH E., MANIATIS T. Molecular Cloning. A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, New York.
14. SANGER F., NICKLEN S., COULSON A. DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sci. U.S.A. 74:1977;5463-5467.
15. STEMME V., RYMO L., RISBERG B., STEMME S. Quantitative analysis of specific mRNA species in minute cell samples by RT-PCR and flow cytometry. J. Immunol. Methods. 249:2001;223-233.
16. TYAGI S. Taking a census of mRNA populations with microbeads. Nat. Biotechnol. 18:2000;597-598.
17. WANG A., DOYLE M., MARK D. Quantitation of mRNA by the polymerase chain reaction. Proc. Natl. Acad. Sci. U.S.A. 86:1989;9717-9721.