-
1
-
-
73649140264
-
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
-
e1000732.
-
Baucom, R.S., Estill, J.C., Chaparro, C., Upshaw, N., Jogi, A., Deragon, J.M., Westerman, R.P., SanMiguel, P.J., and, Bennetzen, J.L., (2009a) Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. Plos Genet. 5, e1000732.
-
(2009)
Plos Genet.
, vol.5
-
-
Baucom, R.S.1
Estill, J.C.2
Chaparro, C.3
Upshaw, N.4
Jogi, A.5
Deragon, J.M.6
Westerman, R.P.7
Sanmiguel, P.J.8
Bennetzen, J.L.9
-
2
-
-
59949097135
-
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
-
Baucom, R.S., Estill, J.C., Leebens-Mack, J., and, Bennetzen, J.L., (2009b) Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res. 19, 243-254.
-
(2009)
Genome Res.
, vol.19
, pp. 243-254
-
-
Baucom, R.S.1
Estill, J.C.2
Leebens-Mack, J.3
Bennetzen, J.L.4
-
3
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
DOI 10.1023/A:1006344508454
-
Bennetzen, J.L., (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 42, 251-269. (Pubitemid 30096120)
-
(2000)
Plant Molecular Biology
, vol.42
, Issue.1
, pp. 251-269
-
-
Bennetzen, J.L.1
-
4
-
-
0036021693
-
Mechanisms and rates of genome expansion and contraction in flowering plants
-
DOI 10.1023/A:1016015913350
-
Bennetzen, J.L., (2002) Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica, 115, 29-36. (Pubitemid 34842168)
-
(2002)
Genetica
, vol.115
, Issue.1
, pp. 29-36
-
-
Bennetzen, J.L.1
-
5
-
-
84882268713
-
-
Columbia University, New York: USABuchen-Osmond C 2006.
-
Boeke, J., Eickbush, T., Sandmeyer, S., and, Voytas, D., (2006) Index of Viruses-Pseudoviridae (2006). ICTVdB-The Universal Virus Database, version 4. Columbia University, New York: USABuchen-Osmond C 2006.
-
(2006)
Index of Viruses - Pseudoviridae (2006). ICTVdB - The Universal Virus Database, Version 4
-
-
Boeke, J.1
Eickbush, T.2
Sandmeyer, S.3
Voytas, D.4
-
6
-
-
77649108099
-
Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: The key for their pattern of distribution within and across plants?
-
89.
-
Bousios, A., Darzentas, N., Tsaftaris, A., and, Pearce, S.R., (2010) Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? Bmc Genomics. 11, 89.
-
(2010)
Bmc Genomics.
, vol.11
-
-
Bousios, A.1
Darzentas, N.2
Tsaftaris, A.3
Pearce, S.R.4
-
7
-
-
20344407697
-
Evolution of DNA sequence nonhomologies among maize inbreds
-
DOI 10.1105/tpc.104.025627
-
Brunner, S., Fengler, K., Morgante, M., Tingey, S., and, Rafalski, A., (2005) Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell, 17, 343-360. (Pubitemid 41672960)
-
(2005)
Plant Cell
, vol.17
, Issue.2
, pp. 343-360
-
-
Brunner, S.1
Fengler, K.2
Morgante, M.3
Tingey, S.4
Rafalski, A.5
-
8
-
-
77955908237
-
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
-
Choulet, F., Wicker, T., Rustenholz, C., et al. (2010) Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell, 22, 1686-1701.
-
(2010)
Plant Cell
, vol.22
, pp. 1686-1701
-
-
Choulet, F.1
Wicker, T.2
Rustenholz, C.3
-
9
-
-
34447328702
-
Phosphorylation Regulates Integration of the Yeast Ty5 Retrotransposon into Heterochromatin
-
DOI 10.1016/j.molcel.2007.06.010, PII S1097276507003851
-
Dai, J.B., Xie, W.W., Brady, T.L., Gao, J.Q., and, Voytas, D.F., (2007) Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Mol. Cell, 27, 289-299. (Pubitemid 47058305)
-
(2007)
Molecular Cell
, vol.27
, Issue.2
, pp. 289-299
-
-
Dai, J.1
Xie, W.2
Brady, T.L.3
Gao, J.4
Voytas, D.F.5
-
10
-
-
77957233310
-
MASiVE: Mapping and analysis of SireVirus elements in plant genome sequences
-
Darzentas, N., Bousios, A., Apostolidou, V., and, Tsaftaris, A.S., (2010) MASiVE: mapping and analysis of SireVirus elements in plant genome sequences. Bioinformatics, 26, 2452-2454.
-
(2010)
Bioinformatics
, vol.26
, pp. 2452-2454
-
-
Darzentas, N.1
Bousios, A.2
Apostolidou, V.3
Tsaftaris, A.S.4
-
11
-
-
33845618112
-
The Molecular Genetics of Crop Domestication
-
DOI 10.1016/j.cell.2006.12.006, PII S0092867406015923
-
Doebley, J.F., Gaut, B.S., and, Smith, B.D., (2006) The molecular genetics of crop domestication. Cell, 127, 1309-1321. (Pubitemid 44960415)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1309-1321
-
-
Doebley, J.F.1
Gaut, B.S.2
Smith, B.D.3
-
12
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner, G.J., Kimura, Y., Daub, C.O., et al. (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat. Genet. 41, 563-571.
-
(2009)
Nat. Genet.
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
-
13
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
DOI 10.1038/nrg2337, PII NRG2337
-
Feschotte, C., (2008) Transposable elements and the evolution of regulatory networks. Nat. Rev. Gen. 9, 397-405. (Pubitemid 351556062)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 397-405
-
-
Feschotte, C.1
-
14
-
-
0036250001
-
Plant transposable elements: Where genetics meets genomics
-
DOI 10.1038/nrg793
-
Feschotte, C., Jiang, N., and, Wessler, S.R,. (2002) Plant transposable elements: where genetics meets genomics. Nat. Rev. Gen. 3, 329-341. (Pubitemid 34506715)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.5
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
15
-
-
0037047037
-
Intraspecific violation of genetic colinearity and its implications in maize
-
DOI 10.1073/pnas.132259199
-
Fu, H.H., and, Dooner, H.K., (2002) Intraspecific violation of genetic colinearity and its implications in maize. Proc. Natl Acad. Sci. USA, 99, 9573-9578. (Pubitemid 34764654)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.14
, pp. 9573-9578
-
-
Fu, H.1
Dooner, H.K.2
-
16
-
-
0345305427
-
Translational recoding signals between gag and pol in diverse LTR retrotransposons
-
DOI 10.1261/rna.5105503
-
Gao, X., Havecker, E.R., Baranov, P.V., Atkins, J.F., and, Voytas, D.F., (2003) Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA, 9, 1422-1430. (Pubitemid 37463468)
-
(2003)
RNA
, vol.9
, Issue.12
, pp. 1422-1430
-
-
Gao, X.1
Havecker, E.R.2
Baranov, P.V.3
Atkins, J.F.4
Voytas, D.F.5
-
17
-
-
4043067769
-
The diversity of LTR retrotransposons
-
225.
-
Havecker, E.R., Gao, X., and, Voytas, D.F., (2004) The diversity of LTR retrotransposons. Genome Biol. 5, 225.
-
(2004)
Genome Biol.
, vol.5
-
-
Havecker, E.R.1
Gao, X.2
Voytas, D.F.3
-
18
-
-
33644659074
-
The sireviruses, a plant-specific lineage of the Ty1/copia retrotransposons, interact with a family of proteins related to dynein light chain 8
-
DOI 10.1104/pp.105.065680
-
Havecker, E.R., Gao, X., and, Voytas, D.F., (2005) The sireviruses, a plant-specific lineage of the Ty1/copia retrotransposons, interact with a family of proteins related to dynein light chain. Plant Physiol. 139, 857-868. (Pubitemid 43907112)
-
(2005)
Plant Physiology
, vol.139
, Issue.2
, pp. 857-868
-
-
Havecker, E.R.1
Gao, X.2
Voytas, D.F.3
-
19
-
-
33845765223
-
The transposable element landscape of the model legume Lotus japonicus
-
DOI 10.1534/genetics.106.062752
-
Holligan, D., Zhang, X.Y., Jiang, N., Pritham, E.J., and, Wessler, S.R., (2006) The transposable element landscape of the model legume Lotus japonicus. Genetics, 174, 2215-2228. (Pubitemid 46011607)
-
(2006)
Genetics
, vol.174
, Issue.4
, pp. 2215-2228
-
-
Holligan, D.1
Zhang, X.2
Jiang, N.3
Pritham, E.J.4
Wessler, S.R.5
-
20
-
-
0142059819
-
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes
-
DOI 10.1073/pnas.1434476100
-
Ilic, K., SanMiguel, P.J., and, Bennetzen, J.L., (2003) A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proc. Natl Acad. Sci. USA, 100, 12265-12270. (Pubitemid 37271549)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.21
, pp. 12265-12270
-
-
Ilic, K.1
SanMiguel, P.J.2
Bennetzen, J.L.3
-
21
-
-
73649118150
-
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs
-
e1000737.
-
Jia, Y., Lisch, D.R., Ohtsu, K., Scanlon, M.J., Nettleton, D., and, Schnable, P.S., (2009) Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. Plos Genet. 5, e1000737.
-
(2009)
Plos Genet.
, vol.5
-
-
Jia, Y.1
Lisch, D.R.2
Ohtsu, K.3
Scanlon, M.J.4
Nettleton, D.5
Schnable, P.S.6
-
22
-
-
1942421723
-
Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes
-
DOI 10.1534/genetics.166.3.1437
-
Kalendar, R., Vicient, C.M., Peleg, O., Anamthawat-Jonsson, K., Bolshoy, A., and, Schulman, A.H., (2004) Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics, 166, 1437-1450. (Pubitemid 38507061)
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1437-1450
-
-
Kalendar, R.1
Vicient, C.M.2
Peleg, O.3
Anamthawat-Jonsson, K.4
Bolshoy, A.5
Schulman, A.H.6
-
23
-
-
2542567200
-
Harbinger transposons and an ancient HARBI1 gene derived from a transposase
-
DOI 10.1089/104454904323090949
-
Kapitonov, V.V., and, Jurka, J., (2004) Harbinger transposons and an ancient HARBI1 gene derived from a transposase. DNA Cell Biol. 23, 311-324. (Pubitemid 38703708)
-
(2004)
DNA and Cell Biology
, vol.23
, Issue.5
, pp. 311-324
-
-
Kapitonov, V.V.1
Jurka, J.2
-
24
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
DOI 10.1093/nar/gki198
-
Katoh, K., Kuma, K., Toh, H., and, Miyata, T., (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33, 511-518. (Pubitemid 40360980)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
25
-
-
33847076849
-
Chromatin Modifications and Their Function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
Kouzarides, T., (2007) Chromatin modifications and their function. Cell, 128, 693-705. (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
26
-
-
40749139473
-
TEnest: Automated chronological annotation and visualization of nested plant transposable elements
-
DOI 10.1104/pp.107.110353
-
Kronmiller, B.A., and, Wise, R.P., (2008) TEnest: automated chronological annotation and visualization of nested plant transposable elements. Plant Physiol. 146, 45-59. (Pubitemid 351380032)
-
(2008)
Plant Physiology
, vol.146
, Issue.1
, pp. 45-59
-
-
Kronmiller, B.A.1
Wise, R.P.2
-
27
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J., and, Marra, M.A., (2009) Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645.
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
28
-
-
5144230950
-
Gene loss and movement in the maize genome
-
DOI 10.1101/gr.2701104
-
Lai, J.S., Ma, J.X., Swigonova, Z., et al. (2004) Gene loss and movement in the maize genome. Genome Res. 14, 1924-1931. (Pubitemid 39386506)
-
(2004)
Genome Research
, vol.14
, Issue.10 A
, pp. 1924-1931
-
-
Lai, J.1
Ma, J.X.2
Swigonova, Z.3
Ramakrishna, W.4
Linton, E.5
Llaca, V.6
Tanyolac, B.7
Park, Y.-J.8
Jeong, O.-Y.9
Bennetzen, J.L.10
Messing, J.11
-
29
-
-
0042574047
-
SIRE1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young
-
DOI 10.1093/molbev/msg142
-
Laten, H.M., Havecker, E.R., Farmer, L.M., and, Voytas, D.F., (2003) SIRE1, an endogenous retrovirus family from Glycine max, is highly homogenous and evolutionarily young. Mol. Biol. Evol. 20, 1222-1230. (Pubitemid 36961240)
-
(2003)
Molecular Biology and Evolution
, vol.20
, Issue.8
, pp. 1222-1230
-
-
Laten, H.M.1
Havecker, E.R.2
Farmer, L.M.3
Voytas, D.F.4
-
30
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Li, W.Z., and, Godzik, A., (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659. (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
31
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J., and, Durbin, R., (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18, 1851-1858.
-
(2008)
Genome Res.
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
32
-
-
78650637906
-
Epigenetic reprogramming during vegetative phase change in maize
-
Li, H., Freeling, M., and, Lisch, D., (2010) Epigenetic reprogramming during vegetative phase change in maize. Proc. Natl Acad. Sci. USA, 107, 22184-22189.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 22184-22189
-
-
Li, H.1
Freeling, M.2
Lisch, D.3
-
33
-
-
34547491170
-
A GeneTrek analysis of the maize genome
-
DOI 10.1073/pnas.0704258104
-
Liu, R.Y., Vitte, C., Ma, J.X., Mahama, A.A., Dhliwayo, T., Lee, M., and, Bennetzen, J.L., (2007) A GeneTrek analysis of the maize genome. Proc. Natl Acad. Sci. USA, 104, 11844-11849. (Pubitemid 47175100)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.28
, pp. 11844-11849
-
-
Liu, R.1
Vitte, C.2
Ma, J.X.3
Mahama, A.A.4
Dhliwayo, T.5
Lee, M.6
Bennetzen, J.L.7
-
34
-
-
73649095856
-
Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome
-
e1000733.
-
Liu, S.Z., Yeh, C.T., Ji, T.M., Ying, K., Wu, H.Y., Tang, H.M., Fu, Y., Nettleton, D., and, Schnable, P.S., (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. Plos Genet. 5, e1000733.
-
(2009)
Plos Genet.
, vol.5
-
-
Liu, S.Z.1
Yeh, C.T.2
Ji, T.M.3
Ying, K.4
Wu, H.Y.5
Tang, H.M.6
Fu, Y.7
Nettleton, D.8
Schnable, P.S.9
-
35
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
DOI 10.1073/pnas.0403715101
-
Ma, J.X., and, Bennetzen, J.L., (2004) Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl Acad. Sci. USA, 101, 12404-12410. (Pubitemid 39122037)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.34
, pp. 12404-12410
-
-
Ma, J.X.1
Bennetzen, J.L.2
-
36
-
-
31044442399
-
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice
-
DOI 10.1073/pnas.0509810102
-
Ma, J.X., and, Bennetzen, J.L., (2006) Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proc. Natl Acad. Sci. USA, 103, 383-388. (Pubitemid 43122410)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.2
, pp. 383-388
-
-
Ma, J.X.1
Bennetzen, J.L.2
-
37
-
-
2342466982
-
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
DOI 10.1101/gr.1466204
-
Ma, J.X., Devos, K.M., and, Bennetzen, J.L., (2004) Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14, 860-869. (Pubitemid 38660503)
-
(2004)
Genome Research
, vol.14
, Issue.5
, pp. 860-869
-
-
Ma, J.X.1
Devos, K.M.2
Bennetzen, J.L.3
-
38
-
-
68449085135
-
A-maize-ing Diversity
-
Mackay, T.F.C., (2009) A-maize-ing Diversity. Science, 325, 688-689.
-
(2009)
Science
, vol.325
, pp. 688-689
-
-
MacKay, T.F.C.1
-
39
-
-
0037072652
-
Long terminal repeat retrotransposons of Oryza sativa
-
RESEARCH0053.
-
McCarthy, E.M., Liu, J.D., Lizhi, G., and, McDonald, J.F., (2002) Long terminal repeat retrotransposons of Oryza sativa. Genome Biol. 3, RESEARCH0053.
-
(2002)
Genome Biol.
, vol.3
-
-
McCarthy, E.M.1
Liu, J.D.2
Lizhi, G.3
McDonald, J.F.4
-
40
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock, B., (1984) The significance of responses of the genome to challenge. Science, 226, 792-801. (Pubitemid 15200674)
-
(1984)
Science
, vol.226
, Issue.4676
, pp. 792-801
-
-
McClintock, B.1
-
41
-
-
70349278339
-
Selective epigenetic control of retrotransposition in Arabidopsis
-
Mirouze, M., Reinders, J., Bucher, E., et al. (2009) Selective epigenetic control of retrotransposition in Arabidopsis. Nature, 461, 427-U130.
-
(2009)
Nature
, vol.461
-
-
Mirouze, M.1
Reinders, J.2
Bucher, E.3
-
42
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
DOI 10.1038/ng1615, PII NG1615
-
Morgante, M., Brunner, S., Pea, G., Fengler, K., Zuccolo, A., and, Rafalski, A., (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat. Genet. 37, 997-1002. (Pubitemid 43086159)
-
(2005)
Nature Genetics
, vol.37
, Issue.9
, pp. 997-1002
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
43
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson, A.H., Bowers, J.E., Bruggmann, R., et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457, 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
-
44
-
-
0036854310
-
Genes of the Pseudoviridae (Ty1/copia retrotransposons)
-
Peterson-Burch, B.D., and, Voytas, D.F., (2002) Genes of the Pseudoviridae (Ty1/copia retrotransposons). Mol. Biol. Evol. 19, 1832-1845. (Pubitemid 35388107)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.11
, pp. 1832-1845
-
-
Peterson-Burch, B.D.1
Voytas, D.F.2
-
45
-
-
27944499244
-
Genomic neighborhoods for Arabidopsis retrotransposons: A role for targeted integration in the distribution of the Metaviridae
-
R78.
-
Peterson-Burch, B.D., Nettleton, D., and, Voytas, D.F., (2004) Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol. 5, R78.
-
(2004)
Genome Biol.
, vol.5
-
-
Peterson-Burch, B.D.1
Nettleton, D.2
Voytas, D.F.3
-
46
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
DOI 10.1126/science.274.5288.765
-
SanMiguel, P., Tikhonov, A., Jin, Y.K., et al. (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science, 274, 765-768. (Pubitemid 26398252)
-
(1996)
Science
, vol.274
, Issue.5288
, pp. 765-768
-
-
SanMiguel, P.1
Tikhonov, A.2
Jin, Y.-K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
47
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
DOI 10.1038/1695
-
SanMiguel, P., Gaut, B.S., Tikhonov, A., Nakajima, Y., and, Bennetzen, J.L., (1998) The paleontology of intergene retrotransposons of maize. Nat. Genet. 20, 43-45. (Pubitemid 28410341)
-
(1998)
Nature Genetics
, vol.20
, Issue.1
, pp. 43-45
-
-
SanMiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
48
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz, J., Cannon, S.B., Schlueter, J., et al. (2010) Genome sequence of the palaeopolyploid soybean. Nature, 463, 178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
-
49
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P.S., Ware, D., Fulton, R.S., et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326, 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
-
50
-
-
0033852426
-
A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
-
DOI 10.1101/gr.10.7.908
-
Shirasu, K., Schulman, A.H., Lahaye, T., and, Schulze-Lefert, P., (2000) A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res. 10, 908-915. (Pubitemid 30608628)
-
(2000)
Genome Research
, vol.10
, Issue.7
, pp. 908-915
-
-
Shirasu, K.1
Schulman, A.H.2
Lahaye, T.3
Schulze-Lefert, P.4
-
51
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
DOI 10.1038/nrg2072, PII NRG2072
-
Slotkin, R.K., and, Martienssen, R., (2007) Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Gen. 8, 272-285. (Pubitemid 46439291)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.4
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
52
-
-
5144234363
-
Close split of sorghum and maize genome progenitors
-
DOI 10.1101/gr.2332504
-
Swigonova, Z., Lai, J.S., Ma, J.X., Ramakrishna, W., Llaca, V., Bennetzen, J.L., and, Messing, J., (2004) Close split of sorghum and maize genome progenitors. Genome Res. 14, 1916-1923. (Pubitemid 39386505)
-
(2004)
Genome Research
, vol.14
, Issue.10 A
, pp. 1916-1923
-
-
Swigonova, Z.1
Lai, J.2
Ma, J.X.3
Ramakrishna, W.4
Llaca, V.5
Bennetzen, J.L.6
Messing, J.7
-
53
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
The International Brachypodium Initiative.
-
The International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463, 763-768.
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
-
54
-
-
84907150192
-
The map-based sequence of the rice genome
-
The International Rice Genome Sequencing Project.
-
The International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature, 436, 793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
55
-
-
70349276670
-
Bursts of retrotransposition reproduced in Arabidopsis
-
Tsukahara, S., Kobayashi, A., Kawabe, A., Mathieu, O., Miura, A., and, Kakutani, T., (2009) Bursts of retrotransposition reproduced in Arabidopsis. Nature, 461, 423-U125.
-
(2009)
Nature
, vol.461
-
-
Tsukahara, S.1
Kobayashi, A.2
Kawabe, A.3
Mathieu, O.4
Miura, A.5
Kakutani, T.6
-
56
-
-
77958149797
-
Transcriptional activity of transposable elements in maize
-
601.
-
Vicient, C.M., (2010) Transcriptional activity of transposable elements in maize. Bmc Genomics. 11, 601.
-
(2010)
Bmc Genomics.
, vol.11
-
-
Vicient, C.M.1
-
57
-
-
33845186134
-
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
-
DOI 10.1073/pnas.0605618103
-
Vitte, C., and, Bennetzen, J.L., (2006) Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc. Natl Acad. Sci. USA, 103, 17638-17643. (Pubitemid 44852213)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
58
-
-
33845215653
-
Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
-
DOI 10.1073/pnas.0603080103
-
Wang, Q.H., and, Dooner, H.K., (2006) Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc. Natl Acad. Sci. USA, 103, 17644-17649. (Pubitemid 44852214)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17644-17649
-
-
Wang, Q.1
Dooner, H.K.2
-
59
-
-
33747465505
-
High rate of chimeric gene origination by retroposition in plant genomes
-
DOI 10.1105/tpc.106.041905
-
Wang, W., Zheng, H.K., Fan, C.Z., et al. (2006) High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell, 18, 1791-1802. (Pubitemid 44260178)
-
(2006)
Plant Cell
, vol.18
, Issue.8
, pp. 1791-1802
-
-
Wang, W.1
Zheng, H.2
Fan, C.3
Li, J.4
Shi, J.5
Cai, Z.6
Zhang, G.7
Liu, D.8
Zhang, J.9
Vang, S.10
Lu, Z.11
Wong, G.K.-S.12
Long, M.13
Wang, J.14
-
60
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang, X.F., Elling, A.A., Li, X.Y., et al. (2009) Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell, 21, 1053-1069.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.F.1
Elling, A.A.2
Li, X.Y.3
-
61
-
-
77950460688
-
The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age
-
Weber, B., Wenke, T., Frommel, U., Schmidt, T., and, Heitkam, T., (2010) The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age. Chromosome Res. 18, 247-263.
-
(2010)
Chromosome Res.
, vol.18
, pp. 247-263
-
-
Weber, B.1
Wenke, T.2
Frommel, U.3
Schmidt, T.4
Heitkam, T.5
-
62
-
-
34347381116
-
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
-
DOI 10.1101/gr.6214107
-
Wicker, T., and, Keller, B., (2007) Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. Genome Res. 17, 1072-1081. (Pubitemid 47026354)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1072-1081
-
-
Wicker, T.1
Keller, B.2
-
63
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
DOI 10.1038/nrg2165, PII NRG2165
-
Wicker, T., Sabot, F., Hua-Van, A., et al. (2007) A unified classification system for eukaryotic transposable elements. Nat. Rev. Gen. 8, 973-982. (Pubitemid 350129169)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
SanMiguel, P.12
Schulman, A.H.13
-
64
-
-
72849134447
-
Distribution, diversity, evolution, and survival of Helitrons in the maize genome
-
Yang, L.X., and, Bennetzen, J.L., (2009) Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proc. Natl Acad. Sci. USA, 106, 19922-19927.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19922-19927
-
-
Yang, L.X.1
Bennetzen, J.L.2
-
65
-
-
67849135053
-
Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome
-
Zerjal, T., Joets, J., Alix, K., Grandbastien, M.A., and, Tenaillon, M.I., (2009) Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome. Plant Mol. Biol. 71, 99-114.
-
(2009)
Plant Mol. Biol.
, vol.71
, pp. 99-114
-
-
Zerjal, T.1
Joets, J.2
Alix, K.3
Grandbastien, M.A.4
Tenaillon, M.I.5
-
66
-
-
43549115088
-
Epigenetic modification of centromeric chromatin: Hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize
-
Zhang, W.L., Lee, H.R., Koo, D.H., and, Jiang, J.M., (2008) Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize. Plant Cell, 20, 25-34.
-
(2008)
Plant Cell
, vol.20
, pp. 25-34
-
-
Zhang, W.L.1
Lee, H.R.2
Koo, D.H.3
Jiang, J.M.4
|