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Volumn 163, Issue 2, 2012, Pages 263-273

A Two-locus Molecular Characterization of Paramecium calkinsi

Author keywords

COI mtDNA; Intraspecific polymorphism; ITS1 5.8S ITS2 LSU rDNA; Molecular phylogeny; Paramecium calkinsi.

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE; PROTOZOAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; RNA 5.8S;

EID: 84856218584     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2011.06.006     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 33645114487 scopus 로고    scopus 로고
    • Intraspecififc genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences
    • Barth D., Krenek S., Fokin S.I., Berendonk T.U. Intraspecififc genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences. J Eukaryot Microbiol 2006, 53:20-25.
    • (2006) J Eukaryot Microbiol , vol.53 , pp. 20-25
    • Barth, D.1    Krenek, S.2    Fokin, S.I.3    Berendonk, T.U.4
  • 2
    • 55049135211 scopus 로고    scopus 로고
    • Cytochrome b sequence data suggest rapid speciation within the Paramecium aurelia species complex
    • Barth D., PrzyboŚ E., Fokin S.I., Schlegel M., Berendonk T.U. Cytochrome b sequence data suggest rapid speciation within the Paramecium aurelia species complex. Mol Phylogenet Evol 2008, 49:669-673.
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 669-673
    • Barth, D.1    Przyboś, E.2    Fokin, S.I.3    Schlegel, M.4    Berendonk, T.U.5
  • 4
    • 18744382503 scopus 로고    scopus 로고
    • Paramecium aurelia revisited
    • Coleman A.W. Paramecium aurelia revisited. J Eukaryot Microbiol 2005, 52:68-77.
    • (2005) J Eukaryot Microbiol , vol.52 , pp. 68-77
    • Coleman, A.W.1
  • 5
    • 78650415756 scopus 로고    scopus 로고
    • Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker
    • Dunthorn M., Foissner W., Katz L.A. Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker. Protist 2011, 162:85-99.
    • (2011) Protist , vol.162 , pp. 85-99
    • Dunthorn, M.1    Foissner, W.2    Katz, L.A.3
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 0031416653 scopus 로고    scopus 로고
    • Morphological diversity of the micronuclei in Paramecium
    • Fokin S.I. Morphological diversity of the micronuclei in Paramecium. Arch Protistenkd 1997, 148:375-387.
    • (1997) Arch Protistenkd , vol.148 , pp. 375-387
    • Fokin, S.I.1
  • 8
    • 23444435675 scopus 로고    scopus 로고
    • Paramecium (Ciliophora, Protista). Taxonomy and phylogenetic relationships
    • In Russian
    • Fokin S.I. Paramecium (Ciliophora, Protista). Taxonomy and phylogenetic relationships. Zool Zhurnal 2001, 80:899-908. In Russian.
    • (2001) Zool Zhurnal , vol.80 , pp. 899-908
    • Fokin, S.I.1
  • 9
    • 0032930286 scopus 로고    scopus 로고
    • Brackish water Paramecium species and Paramecium polycaryum. Morphometrical analysis and some biological peculiarities
    • Fokin S.I., Chivilev S.M. Brackish water Paramecium species and Paramecium polycaryum. Morphometrical analysis and some biological peculiarities. Acta Protozool 1999, 38:105-117.
    • (1999) Acta Protozool , vol.38 , pp. 105-117
    • Fokin, S.I.1    Chivilev, S.M.2
  • 10
    • 0035662605 scopus 로고    scopus 로고
    • Nuclear reorganization variety in Paramecium (Ciliophora: Peniculida) and its possible evolution
    • Fokin S.I., PrzyboŚ E., Chivilev S.M. Nuclear reorganization variety in Paramecium (Ciliophora: Peniculida) and its possible evolution. Acta Protozool 2001, 40:249-261.
    • (2001) Acta Protozool , vol.40 , pp. 249-261
    • Fokin, S.I.1    Przyboś, E.2    Chivilev, S.M.3
  • 11
    • 0032840965 scopus 로고    scopus 로고
    • Rediscovery of Paramecium nephridiatum Gelei, 1925 and its characteristics
    • Fokin S.I., Stoeck T., Schmidt H.J. Rediscovery of Paramecium nephridiatum Gelei, 1925 and its characteristics. J Eukaryot Microbiol 1999, 46:416-425.
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 416-425
    • Fokin, S.I.1    Stoeck, T.2    Schmidt, H.J.3
  • 12
    • 0033591623 scopus 로고    scopus 로고
    • Paramecium dubosqui Chatton, Brachon. Distribution, ecology and taxonomy, 1933
    • Fokin S.I., Stoeck T., Schmidt H.J. Paramecium dubosqui Chatton, Brachon. Distribution, ecology and taxonomy, 1933. Eur J Protistol 1999, 35:161-167.
    • (1999) Eur J Protistol , vol.35 , pp. 161-167
    • Fokin, S.I.1    Stoeck, T.2    Schmidt, H.J.3
  • 13
    • 4143053727 scopus 로고    scopus 로고
    • Morphological and molecular investigations of Paramecium schewiakoffi nov. spec. (Ciliophora, Oligohymenophorea) and current status of Paramecium distribution, and taxonomy of Paramecium spp.
    • Fokin S.I., PrzyboŚ E., Chivilev S.M., Beier C.L., Horn M., Skotarczak B., Wodecka B., Fujishima M. Morphological and molecular investigations of Paramecium schewiakoffi nov. spec. (Ciliophora, Oligohymenophorea) and current status of Paramecium distribution, and taxonomy of Paramecium spp. Eur J Protistol 2004, 40:225-243.
    • (2004) Eur J Protistol , vol.40 , pp. 225-243
    • Fokin, S.I.1    Przyboś, E.2    Chivilev, S.M.3    Beier, C.L.4    Horn, M.5    Skotarczak, B.6    Wodecka, B.7    Fujishima, M.8
  • 15
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 33244476958 scopus 로고    scopus 로고
    • Comparison of the evolutionary distances among syngens and sibling species of Paramecium
    • Hori M., Tomikawa I., PrzyboŚ E., Fujishima M. Comparison of the evolutionary distances among syngens and sibling species of Paramecium. Mol Phylogenet Evol 2006, 38:697-704.
    • (2006) Mol Phylogenet Evol , vol.38 , pp. 697-704
    • Hori, M.1    Tomikawa, I.2    Przyboś, E.3    Fujishima, M.4
  • 17
    • 77953350502 scopus 로고    scopus 로고
    • Intraspecific genetic divergence of Paramecium bursaria and reconstruction of paramecian phylogenetic tree
    • Hoshina R., Hayashi S., Imamura N. Intraspecific genetic divergence of Paramecium bursaria and reconstruction of paramecian phylogenetic tree. Acta Protozool 2006, 42:171-181.
    • (2006) Acta Protozool , vol.42 , pp. 171-181
    • Hoshina, R.1    Hayashi, S.2    Imamura, N.3
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0010715440 scopus 로고
    • The Interplay among Ecology, Breeding Systems, and Genetics in the Paramecium aurelia and Paramecium bursaria Complexes
    • Biopress, Bristol
    • Landis W.G. The Interplay among Ecology, Breeding Systems, and Genetics in the Paramecium aurelia and Paramecium bursaria Complexes. Progress in Protistology 1986, Vol. 1:287-307. Biopress, Bristol.
    • (1986) Progress in Protistology , vol.1 , pp. 287-307
    • Landis, W.G.1
  • 20
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 21
    • 0007559602 scopus 로고
    • Mating types in Paramecium calkinsi
    • (in Japanese, English Abstract)
    • Nakata A. Mating types in Paramecium calkinsi. Doubutsugaku zasshi 1958, 67:210-213. (in Japanese, English Abstract).
    • (1958) Doubutsugaku zasshi , vol.67 , pp. 210-213
    • Nakata, A.1
  • 23
    • 78449298530 scopus 로고    scopus 로고
    • Electrophoretic karyotype polymorphism of sibling species of the Paramecium aurelia complex
    • Nekrasova I.V., PrzyboŚ E., Rautian M.S., Potekhin A.A. Electrophoretic karyotype polymorphism of sibling species of the Paramecium aurelia complex. J Eukaryot Microbiol 2010, 57:494-507.
    • (2010) J Eukaryot Microbiol , vol.57 , pp. 494-507
    • Nekrasova, I.V.1    Przyboś, E.2    Rautian, M.S.3    Potekhin, A.A.4
  • 24
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic tress on personal computers
    • Page R.D.M. TreeView: An application to display phylogenetic tress on personal computers. Bioinformatics 1996, 12:357-358.
    • (1996) Bioinformatics , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 25
    • 33747828694 scopus 로고    scopus 로고
    • ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online
    • Posada D. ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Res 2006, 34:700-703.
    • (2006) Nucleic Acids Res , vol.34 , pp. 700-703
    • Posada, D.1
  • 26
    • 84856220219 scopus 로고    scopus 로고
    • Sibling species concept in ciliates Paramecium revisited: zoogeographic and genomic aspects of syngen biology
    • Potekhin A., Nekrasova I., Skoblo I., Berendonk T., Rautian M. Sibling species concept in ciliates Paramecium revisited: zoogeographic and genomic aspects of syngen biology. Protistology 2007, 5:64-65.
    • (2007) Protistology , vol.5 , pp. 64-65
    • Potekhin, A.1    Nekrasova, I.2    Skoblo, I.3    Berendonk, T.4    Rautian, M.5
  • 27
    • 0017907651 scopus 로고
    • Cytological and karyological studies of Paramecium jenningsi
    • PrzyboŚ E. Cytological and karyological studies of Paramecium jenningsi. Folia biol (Kraków) 1978, 26:25-29.
    • (1978) Folia biol (Kraków) , vol.26 , pp. 25-29
    • Przyboś, E.1
  • 28
    • 29244445909 scopus 로고    scopus 로고
    • Phylogenetic relationships of Paramecium jenningsi strains (classical analysis and RAPD studies)
    • PrzyboŚ E., Skotarczak B., Wodecka B. Phylogenetic relationships of Paramecium jenningsi strains (classical analysis and RAPD studies). Folia biol (Kraków) 2003, 51:185-195.
    • (2003) Folia biol (Kraków) , vol.51 , pp. 185-195
    • Przyboś, E.1    Skotarczak, B.2    Wodecka, B.3
  • 29
    • 66849113458 scopus 로고    scopus 로고
    • Molecular polymorphism of Paramecium tetraurelia (Ciliophora, Protozoa) in strains originating from different continents
    • PrzyboŚ E., Tarcz S., Fokin S. Molecular polymorphism of Paramecium tetraurelia (Ciliophora, Protozoa) in strains originating from different continents. Folia biol (Kraków) 2009, 57:57-63.
    • (2009) Folia biol (Kraków) , vol.57 , pp. 57-63
    • Przyboś, E.1    Tarcz, S.2    Fokin, S.3
  • 30
    • 79957445163 scopus 로고    scopus 로고
    • Polymorphism of Paramecium pentaurelia (Ciliophora, Oligohymenophorea) strains revealed by rDNA and mtDNA sequences"
    • PrzyboŚ E., Tarcz S., Greczek-Stachura M., Surmacz M. Polymorphism of Paramecium pentaurelia (Ciliophora, Oligohymenophorea) strains revealed by rDNA and mtDNA sequences" Eur J Protistol 2011, 47:138-143.
    • (2011) Eur J Protistol , vol.47 , pp. 138-143
    • Przyboś, E.1    Tarcz, S.2    Greczek-Stachura, M.3    Surmacz, M.4
  • 31
    • 35948938949 scopus 로고    scopus 로고
    • Genetic analysis of the Paramecium aurelia species complex (Protozoa: Ciliophora) by classical and molecular methods
    • PrzyboŚ E., Prajer M., Greczek-Stachura M., Skotarczak B., Maciejewska A., Tarcz S. Genetic analysis of the Paramecium aurelia species complex (Protozoa: Ciliophora) by classical and molecular methods. Syst Biodivers 2007, 5:417-434.
    • (2007) Syst Biodivers , vol.5 , pp. 417-434
    • Przyboś, E.1    Prajer, M.2    Greczek-Stachura, M.3    Skotarczak, B.4    Maciejewska, A.5    Tarcz, S.6
  • 32
    • 48249115585 scopus 로고    scopus 로고
    • Molecular studies on intra-specific differentiation of Paramecium dodecaurelia, with description of new stands of the species (Protozoa, Ciliophora)
    • PrzyboŚ E., Tarcz S., Greczek-Stachura M., Surmacz M., Potekhin A., Rautian M. Molecular studies on intra-specific differentiation of Paramecium dodecaurelia, with description of new stands of the species (Protozoa, Ciliophora). Folia biol (Kraków) 2008, 56:249-262.
    • (2008) Folia biol (Kraków) , vol.56 , pp. 249-262
    • Przyboś, E.1    Tarcz, S.2    Greczek-Stachura, M.3    Surmacz, M.4    Potekhin, A.5    Rautian, M.6
  • 33
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 77956835775 scopus 로고
    • Methods in Paramecium Research
    • Academic Press, New York, London
    • Sonneborn T.M. Methods in Paramecium Research. Methods in Cell Physiology 1970, Vol. 4:241-339. Academic Press, New York, London.
    • (1970) Methods in Cell Physiology , vol.4 , pp. 241-339
    • Sonneborn, T.M.1
  • 36
    • 0000448959 scopus 로고
    • The Paramecium aurelia complex of fourteen sibling species
    • Sonneborn T.M. The Paramecium aurelia complex of fourteen sibling species. Trans Am Microsc Soc 1975, 94:155-178.
    • (1975) Trans Am Microsc Soc , vol.94 , pp. 155-178
    • Sonneborn, T.M.1
  • 37
    • 0032495185 scopus 로고    scopus 로고
    • Combination of genetics with inter-and intra-strain crosses and RAPD-fingerprints reveals different population structures within the Paramecium aurelia species complex
    • Stoeck T., PrzyboŚ E., Schmidt H.J. Combination of genetics with inter-and intra-strain crosses and RAPD-fingerprints reveals different population structures within the Paramecium aurelia species complex. Eur J Protistol 1998, 34:348-355.
    • (1998) Eur J Protistol , vol.34 , pp. 348-355
    • Stoeck, T.1    Przyboś, E.2    Schmidt, H.J.3
  • 38
    • 0034094990 scopus 로고    scopus 로고
    • ARDRA and RAPD-fingerprinting reject the sibling species concept for the ciliate Paramecium caudatum (Ciliophora, Protista)
    • Stoeck T., Welter H., Seitz-Bender D., Kusch J., Schmidt H.J. ARDRA and RAPD-fingerprinting reject the sibling species concept for the ciliate Paramecium caudatum (Ciliophora, Protista). Zool Scripta 2000, 29:75-82.
    • (2000) Zool Scripta , vol.29 , pp. 75-82
    • Stoeck, T.1    Welter, H.2    Seitz-Bender, D.3    Kusch, J.4    Schmidt, H.J.5
  • 39
    • 77954316382 scopus 로고    scopus 로고
    • Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker
    • Strüder-Kypke M.C., Lynn D.H. Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker. Syst Biodivers 2010, 8:131-148.
    • (2010) Syst Biodivers , vol.8 , pp. 131-148
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 40
    • 18244418184 scopus 로고    scopus 로고
    • Phylogenetic relationships of the genus Paramecium inferred from small subunit rRNA sequences
    • Strüder-Kypke M.C., Wright A-DG, Fokin S.I., Lynn D.H. Phylogenetic relationships of the genus Paramecium inferred from small subunit rRNA sequences. Mol Phylogenet Evol 2000, 14:122-130.
    • (2000) Mol Phylogenet Evol , vol.14 , pp. 122-130
    • Strüder-Kypke, M.C.1    Wright, A.-D.G.2    Fokin, S.I.3    Lynn, D.H.4
  • 41
    • 0343953611 scopus 로고    scopus 로고
    • Phylogenetic relationships of the subclass Peniculia (Oligohemenophorea, Ciliophora) inferred from small subunit rRNA gene sequences
    • Strüder-Kypke M.C., Wright A-DG, Fokin S.I., Lynn D.H. Phylogenetic relationships of the subclass Peniculia (Oligohemenophorea, Ciliophora) inferred from small subunit rRNA gene sequences. J Eukaryot Microbiol 2000, 47:419-429.
    • (2000) J Eukaryot Microbiol , vol.47 , pp. 419-429
    • Strüder-Kypke, M.C.1    Wright, A.-D.G.2    Fokin, S.I.3    Lynn, D.H.4
  • 42
    • 84856221950 scopus 로고    scopus 로고
    • In: PAUP. Phylogenetic Analysis Using Parsimony and Other Methods, version 4.0. Sinauer Associates, Sunderland, MA, USA
    • Swofford DL (2002) In: PAUP. Phylogenetic Analysis Using Parsimony and Other Methods, version 4.0. Sinauer Associates, Sunderland, MA, USA.
    • (2002)
    • Swofford, D.L.1
  • 43
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3
  • 44
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K., Nei M., Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 2004, 101:11030-11035.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 45
    • 33748349257 scopus 로고    scopus 로고
    • Intraspecific variation of diagnostic rDNA genes in Paramecium dodecaurelia, P. tredecaurelia and P. quadecaurelia (Ciliophora, Oligohymenophorea)
    • Tarcz S., PrzyboŚ E., Prajer M., Greczek-Stachura M. Intraspecific variation of diagnostic rDNA genes in Paramecium dodecaurelia, P. tredecaurelia and P. quadecaurelia (Ciliophora, Oligohymenophorea). Acta Protozool 2006, 45:255-263.
    • (2006) Acta Protozool , vol.45 , pp. 255-263
    • Tarcz, S.1    Przyboś, E.2    Prajer, M.3    Greczek-Stachura, M.4
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 0002443686 scopus 로고
    • Morphology, Taxonomy and General Biology of the Genus Paramecium
    • Elsevier, Amsterdam, W.J. Van Wagtendonk (Ed.)
    • Vivier E. Morphology, Taxonomy and General Biology of the Genus Paramecium. Paramecium, a Current Survey 1974, 1-89. Elsevier, Amsterdam. W.J. Van Wagtendonk (Ed.).
    • (1974) Paramecium, a Current Survey , pp. 1-89
    • Vivier, E.1
  • 48
    • 0342997016 scopus 로고
    • Eight well-defined species of Paramecium (Protozoa, Ciliata)
    • Wenrich D.H. Eight well-defined species of Paramecium (Protozoa, Ciliata). Trans Am Microsc Soc 1928, 47:275.
    • (1928) Trans Am Microsc Soc , vol.47 , pp. 275
    • Wenrich, D.H.1
  • 50
    • 0342997014 scopus 로고
    • The structure, life history, and intrageneric relationships of Paramecium calkinsi, sp. nov
    • Woodruff L.L. The structure, life history, and intrageneric relationships of Paramecium calkinsi, sp. nov. Biol Bull 1921, 41:171-180.
    • (1921) Biol Bull , vol.41 , pp. 171-180
    • Woodruff, L.L.1


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