Molecular studies on intraspecific differentiation of paramecium dodecaurelia, with description of new stands of the species (Protozoa, Ciliophora)

Folia Biologica

Volumn 56, Issue 3-4, 2008, Pages 249-262

  Przyboś, Ewa ^a   Tarcz, Sebastian ^a   Greczek Stachura, Magdalena ^b   Surmacz, Marta ^a   Potekhin, Alexey ^c   Rautian, Maria ^c  

^a INSTITUTE OF SYSTEMATICS AND EVOLUTION OF ANIMALS   (Poland)

^b Educational Academy   (Poland)

^c ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

Author keywords

Breeding system; Geographical distribution; Intraspecific differentiation; P. dodecaurelia; Paramecium aurelia species complex; RAPD PCR fingerprinting; Sequencing of LSU rRNA and COI mtDNA fragments

Indexed keywords

CILIOPHORA; PARAMECIUM; PARAMECIUM AURELIA; PARAMECIUM DODECAURELIA; PROTOZOA;

MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; CROSS BREEDING; DEMOGRAPHY; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; GEOGRAPHY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARAMECIUM; PHYLOGENY; POLAND; RANDOM AMPLIFIED POLYMORPHIC DNA; SPAIN; USSR;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; COMMONWEALTH OF INDEPENDENT STATES; CROSSES, GENETIC; DEMOGRAPHY; DNA PRIMERS; DNA, MITOCHONDRIAL; GEOGRAPHY; MOLECULAR SEQUENCE DATA; PARAMECIUM; PHYLOGENY; POLAND; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEQUENCE ANALYSIS, DNA; SPAIN;

EID: 48249115585     PISSN: 00155497     EISSN: None     Source Type: Journal    
DOI: 10.3409/fb.56_3-4.249-262     Document Type: Article

References (62)

1. AUFDERHEIDE K. J., DAGGETT P.-M., NERAD T. A. 1983. Paramecium sonneborni n. sp., a new member of the Paramecium aurelia species-complex. J. Protozool. 30: 128-131.
2. AURY J.-M. et al. 2006. Global trends of whole- genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444: 171-178.
3. BARTH D., KRENEK S., FOKIN S. I., BERENDONK T. U. 2006. Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome C oxidase I sequences. J. Eukaryot. Microbiol. 53: 20-25.
4. BERNHARD D., SCHLEGEL M. 1998. Evolution of histone H4 and He genes in different ciliate lineages. J. Mol. Evol. 46: 344-354.
5. CHANTANGSI C., LYNN D. H. 2006. Identification and phylogenetic relationships among nine species of Tetrahymena using cytochrome c oxidase subunit I gene. J. Eukaryot. Microbiol. 53 (Abstracts): 7S.
6. CHEN T. T. 1956. Varieties and mating types in Paramecium bursaria. II. Variety and mating types found in China. J. exp. Zool. 132: 255-268.
7. CHEN Z., SONG W., WARREN A. 2000. Studies on six Euplotes spp. (Ciliophora: Hypotrichida) using RAPD fingerprinting, including a comparison with morphometric analyses. Acta Protozool. 39: 209-216.
8. CLARK C.G. 1997. A tool for the study of genetic diversity in microorganisms. J. Eukaryot. Microbiol. 44: 277-283.
9. COLEMAN A. W. 2005. Paramecium aurelia revisited. J. Eukaryot. Microbiol. 52: 68-77.
10. FELSENSTEIN J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
11. FINLAY B. J. 2004. Protist taxonomy: an ecological perspective. Phil. Trans. R. Soc. Lond. B 359: 599-610.
12. FINLAY B. J., ESTEBAN G. F., BROWN S., FENCHEL T., HOEF-EMDEN K. 2006. Multiple cosmopolitan ecotypes within a microbioal eukaryote morphospecies. Protist 157: 377-390.
13. FOKIN S. I., STOECK T., SCHMIDT H. J. 1999. Rediscovery of Paramecium nephridiatum Gelei, 1925 and its characteristics. J. Eukaryot. Microbiol. 46: 416-426.
14. HALL T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids, Symp. Ser. 41: 95-98.
15. HEBERT P. D. N., CYWINSKA A., BALL S. L., DEWAARD J. R. 2003. Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B. 270: 313-322.
16. HORI M., TOMIKAWA I., PRZYBOŚ E., FUJISHIMA M. 2006. Comparison of the evolutionary distances among syngens and sibling species of Paramecium. Mol. Phylogenet. Evol. 38: 697-704.
17. JUKES T. H., CANTOR C. R. 1969. Evolution of protein molecules. (In: Mammalian Protein Metabolism, Munro H. N. ed. Academic Press, New York): 121-132.
18. KIMURA M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
19. KUMAR S., TAMURA K., NEI M. 2004. MEGA3: Integrated software for molecular evolutionary genetic analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
20. LANDIS W. G. 1986. The interplay among ecology, breeding systems, and genetics in the Paramecium aurelia and Paramecium bursaria complexes. (In: Progress in Protistology, J. O. Corliss, D. Patterson. eds. Biopress, Bristol): 287-307.
21. LYNCH T. J., BRICKNER J., NAKANO K. J., ORIAS E. 1995. Genetic map of amplified DNA polymorphisms closely linked to the mating type locus of Tetrahymena thermophila. Genetics 141: 1315-1325.
22. LYNN D. H., STRÜDER-KYPKE M. C. 2006. Species of Tetrahymena identical by small subunit rRNA gene sequences are discriminated by mitochondrial cytochrome c oxidase I gene sequences. J. Eukaryot. Microbiol. 53: 385-387.
23. MACIEJEWSKA A. 2006. Sibling species within Paramecium jenningsi revealed by PCR-RFLP. Acta Protozool: 45: 387-393.
24. MACIEJEWSKA A. 2007. Relationships of new sibling species of Paramecium jenningsi based on sequences of the histone H4 gene fragment. Eur. J. Protistol. 43: 125-130.
25. NANNEY D. L., PARK C., PREPARATA R., SIMON E. M. 1998. Comparison of sequence differences in a variable 23S rRNA domain among sets of cryptic species of ciliated protozoa. J. Eukaryot. Microbiol. 45: 91-100.
26. NEI M., LI W.-H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. 76: 5260-5273.
27. PAGE R. D. M. 1996. TreeView: An application to display phylogenetic tress on personal computers. Comput. Appl. Biosci. 12: 357-358.
28. th Intern. Congress of Protozoology, July 10-15, 2005, Guangzhou, China. Abstract Book: 74.
29. PRZYBOŚ E. 1975. Genetic studies of Paramecium jenningsi strains (Diller, Earl, 1958). Folia biol. (Kraków) 23: 425-471.
30. PRZYBOŚ E. 1978. Cytological and karyological studies of Paramecium jenningsi. Folia biol. (Kraków) 26: 25-29.
31. PRZYBOŚ E., FOKIN S. I. 2003. Finding of Paramecium dodecaurelia in Europe. Protistology 3: 136-137.
32. PRZYBOŚ E., FOKIN S., STOECK T., SCHMIDT H. J. 1999. Occurrence and ecology of Paramecium jenningsi strains. Folia biol. (Kraków) 47: 53-59.
33. PRZYBOŚ E., HORI M., FOKIN S. I. 2003b. Strains of Paramecium quadecaurelia from Namibia, Africa. Genetic and molecular studies. Acta Protozool. 42: 357-360.
34. PRZYBOŚ E., MACIEJEWSKA A., SKOTARCZAK B. 2006b. Relationships of species of the Paramecium aurelia complex (Protozoa, Ph. Ciliophora, Cl. Oligohymenophorea) based on sequencing of histone H4 gene fragment. Folia biol. (Kraków) 54: 37-42.
35. PRZYBOŚ E., PRAJER M., GRECZEK- STACHURA M. 2005b. Molecular analysis (RAPD-PCR) of inter-strain hybrids of the Paramecium aurelia species complex (Ciliophora, Protozoa). Folia biol. (Kraków) 53: 115-122.
36. PRZYBOŚ E., PRAJER M., GRECZEK- STACHURA M., FOKIN S. I., RAUTIAN M., POTEKHIN A. 2005a. New European stands of Paramecium pentaurelia, Paramecium septaurelia, and Paramecium dodecaurelia, genetic and molecular studies. Folia biol. (Kraków) 53: 123-128.
37. PRZYBOŚ E., PRAJER M., GRECZEK- STACHURA M., SKOTARCZAK B., MACIEJEWSKA., TARCZ S. 2007a. Genetic analysis of the Paramecium aurelia complex by classical and molecular methods. Systematics and Biodiversity 5: 417-434.
38. PRZYBOŚ E., SKOTARCZAK B., WODECKA B. 2003a. Phylogenetic relationships of Paramecium jenningsi strains (classical analysis and RAPD studies). Folia biol. (Kraków) 51: 185-195.
39. PRZYBOŚ E., TARCZ S. 2005. Molecular polymorphism of strains within Paramecium septaurelia (Ciliophora, Oligohymenophorea). Folia biol. (Kraków) 53: 87-93.
40. PRZYBOŚ E., TARCZ S., RAUTIAN M., POTEKHIN A. 2006a. Species of the Paramecium aurelia complex in Russia (Western region of the European part) with molecular characteristics of P. novaurelia. Folia biol. (Kraków) 54: 43-47.
41. PRZYBOŚ E., TARCZ S., SKOBLO I. 2007b. First American stand of Paramecium novaurelia and intra-specific differentiation of the species. Folia biol. (Kraków) 55: 53-63.
42. RAZOWSKI J. 2008. Tortricidae (Lepidoptera) of the Palearctic Region. Vol. 1. General part and Tortricini. F. Slamka ed. Kraków- Bratislava. P. 33.
43. RONQUIST F., HUELSENBECK J. P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
44. SAITOU N., NEI M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
45. SCHMIDT S. L., AMMERMANN D., SCHLEGEL M., BERNHARD D. 2006a. Stylonychia lemnae strains from a north American site differ in a single nucleotide within the small subunit rDNA from Eurasian strains. J. Eukaryot. Microbiol. 53: 308-309.
46. SCHMIDT S. L., BERNHARD D., SCHLEGEL M., FOISSNER W. 2007. Phylogeny of the Stichotrichia (Ciliophora; Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data. J. Eukaryot. Microbiol. 54: 201-209.
47. SCHMIDT S. L., BERNHARD D., SCHLEGEL M., FRIED J. 2006b. Fluorescence in situ hybridization with specific oligonucleotide rRNA probes distinguishes the sibling species Stylonychia lemnae and Stylonychia mytilus (Ciliophora, Sprirotrichea). Protist 157: 21-30.
48. SCHWARZ M. V., ZUENDORF A., STOECK T. 2007. Morphology, ultrastructure, molecular phylogeny, and autecology of Euplotes elagans Kahl, 1932 (Hypotrichida; Euplotidae) isolated from the anoxic Manager Fjord, Denmark. J. Eukaryot. Microbiol. 54: 125-136.
49. SONNEBORN T. M. 1957. Breeding systems, reproductive methods and species problem in Protozoa. (In: The Species Problem, E. Mayr. ed. AAAS, Washington D.C.): 155-324.
50. SONNEBORN T. M. 1970. Methods in Paramecium research. (In: Methods in Cell Physiology, Prescott D. M. ed., vol. 4. Academic Press, New York, London): 241-339.
51. SONNEBORN T. M. 1974. Paramecium aurelia. (In: Handbook of Genetics, vol. 2. R. C. King ed., Plenum Press, New York): 469-594.
52. SONNEBORN T. M. 1975. The Paramecium aurelia complex of fourteen sibling species. Trans. Amer. Micros. Soc. 94: 155-178.
53. STOECK T., PRZYBOŚ E., KUSCH J., SCHMIDT H. J. 2000. Intra-species differentiation and level of inbreeding of different sibling species of the Paramecium aurelia complex. Acta Protozool. 39: 15-22.
54. STOECK T., PRZYBOŚ E., SCHMIDT H. J. 1998. A comparison of genetics with inter-strain crosses and RAPD-fingerprints reveals different population structures within the Paramecium aurelia complex. Europ. J. Protistol. 43: 348-355.
55. STOECK T., SCHMIDT H. J. 1998. Fast and accurate identification of European species of the Paramecium aurelia complex by RAPD-fingerprints. Microb. Ecology 35: 311-317.
56. STOECK S., WELTER H., SEITZ-BENDER D., KUSCH J., SCHMIDT H. J. 2000. ARDRA and RAPD-fingerprinting reject the sibling species concept for the ciliate Paramecium caudatum (Ciliophora, Protista). Zool. Scripta 29: 75-82.
57. STRÜDER-KYPKE M. C., WRIGTH A.-D.G., FOKIN S. I., LYNN D. H. 2000a. Phylogenetic relationships of the genus Paramecium inferred from small subunit rRNA gene sequences. Mol. Phylogenet. Evol. 14: 122-130.
58. STRÜDER-KYPKE M. C., WRIGTH A.-D.G., FOKIN S. I., LYNN D. H. 2000b. Phylogenetic relationships of the subclass Peniculia (Oligohymenophorea, Ciliophora) inferred from small subunit rRNA gene sequences. J. Eukaryot. Microbiol. 47: 419-429.
59. TARCZ S., PRZYBOŚ E., PRAJER M., GRECZEK-STACHURA M. 2006. Intraspecific variation of diagnostic rDNA genes in Paramecium dodecaurelia, P. tredecaurelia and P. quadecaurelia (Ciliophora, Oligohymenophorea). Acta Protozool. 45: 255-263.
60. THOMPSON J. D., HIGGINS D. G., GIBSON T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-80.
61. VIVIER E. 1974. Morphology, taxonomy and general biology of the genus Paramecium. (In: Paramecium, A Current Survey. W.I. van Wagtendonk ed. Eisevier, Amsterdam): 1-89.
62. YI Z.-Z., SONG W.-B., CHEN Z.-G., HU X.-Z. SHAO C., LI L.-Q. 2006. Species separation and identification of three Pseudokeronopsis and five Holosticha (Protozoa, Ciliophora, Hypotrichida) based on RAPD fingerprinting. Acta Zootaxonomica Sinica 31: 480-484.