-
1
-
-
33646165128
-
A central role for central tolerance
-
Kyewski B, Klein L (2006) A central role for central tolerance. Annu Rev Immunol 24: 571-606.
-
(2006)
Annu Rev Immunol
, vol.24
, pp. 571-606
-
-
Kyewski, B.1
Klein, L.2
-
2
-
-
0037112047
-
Projection of an immunological self shadow within the thymus by the aire protein
-
DOI 10.1126/science.1075958
-
Anderson MS, et al. (2002) Projection of an immunological self shadow within the thymus by the aire protein. Science 298:1395-1401. (Pubitemid 35346134)
-
(2002)
Science
, vol.298
, Issue.5597
, pp. 1395-1401
-
-
Anderson, M.S.1
Venanzi, E.S.2
Klein, L.3
Chen, Z.4
Berzins, S.P.5
Turley, S.J.6
Von Boehmer, H.7
Bronson, R.8
Dierich, A.9
Benoist, C.10
Mathis, D.11
-
4
-
-
56749105120
-
The variable immunological self: Genetic variation and nongenetic noise in Aire-regulated transcription
-
Venanzi ES, Melamed R, Mathis D, Benoist C (2008) The variable immunological self: Genetic variation and nongenetic noise in Aire-regulated transcription. Proc Natl Acad Sci USA 105:15860-15865.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15860-15865
-
-
Venanzi, E.S.1
Melamed, R.2
Mathis, D.3
Benoist, C.4
-
5
-
-
56749184864
-
Ectopic expression of peripheraltissue antigens in the thymic epithelium: Probabilistic, monoallelic, misinitiated
-
Villaseñor J, Besse W, Benoist C, Mathis D (2008) Ectopic expression of peripheraltissue antigens in the thymic epithelium: Probabilistic, monoallelic, misinitiated. Proc Natl Acad Sci USA 105:15854-15859.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15854-15859
-
-
Villaseñor, J.1
Besse, W.2
Benoist, C.3
Mathis, D.4
-
6
-
-
38649131259
-
Promiscuous gene expression patterns in single medullary thymic epithelial cells argue for a stochastic mechanism
-
DOI 10.1073/pnas.0707486105
-
Derbinski J, Pinto S, Rösch S, Hexel K, Kyewski B (2008) Promiscuous gene expression patterns in single medullary thymic epithelial cells argue for a stochastic mechanism. Proc Natl Acad Sci USA 105:657-662. (Pubitemid 351171764)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.2
, pp. 657-662
-
-
Derbinski, J.1
Pinto, S.2
Rosch, S.3
Hexel, K.4
Kyewski, B.5
-
8
-
-
73149115486
-
Aire's partners in the molecular control of immunological tolerance
-
Abramson J, Giraud M, Benoist C, Mathis D (2010) Aire's partners in the molecular control of immunological tolerance. Cell 140:123-135.
-
(2010)
Cell
, vol.140
, pp. 123-135
-
-
Abramson, J.1
Giraud, M.2
Benoist, C.3
Mathis, D.4
-
9
-
-
45849137524
-
The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression
-
Org T, et al. (2008) The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression. EMBO Rep 9:370-376.
-
(2008)
EMBO Rep
, vol.9
, pp. 370-376
-
-
Org, T.1
-
10
-
-
56749174388
-
Aire employs a histone-binding module to mediate immunological tolerance, linking chromatin regulation with organ-specific autoimmunity
-
Koh AS, et al. (2008) Aire employs a histone-binding module to mediate immunological tolerance, linking chromatin regulation with organ-specific autoimmunity. Proc Natl Acad Sci USA 105:15878-15883.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15878-15883
-
-
Koh, A.S.1
-
11
-
-
66249141300
-
The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation
-
Chignola F, et al. (2009) The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation. Nucleic Acids Res 37:2951-2961.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2951-2961
-
-
Chignola, F.1
-
12
-
-
77955602966
-
Global relevance of Aire binding to hypomethylated lysine-4 of histone-3
-
Koh AS, Kingston RE, Benoist C, Mathis D (2010) Global relevance of Aire binding to hypomethylated lysine-4 of histone-3. Proc Natl Acad Sci USA 107:13016-13021.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 13016-13021
-
-
Koh, A.S.1
Kingston, R.E.2
Benoist, C.3
Mathis, D.4
-
13
-
-
37549060329
-
AIRE recruits P-TEFb for transcriptional elongation of target genes in medullary thymic epithelial cells
-
Oven I, et al. (2007) AIRE recruits P-TEFb for transcriptional elongation of target genes in medullary thymic epithelial cells. Mol Cell Biol 27:8815-8823.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 8815-8823
-
-
Oven, I.1
-
14
-
-
0024282827
-
The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged
-
Rougvie AE, Lis JT (1988) The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 54: 795-804.
-
(1988)
Cell
, vol.54
, pp. 795-804
-
-
Rougvie, A.E.1
Lis, J.T.2
-
15
-
-
0022461818
-
A block to elongation is largely responsible for decreased transcription of c-myc in differentiated HL60 cells
-
Bentley DL, Groudine M (1986) A block to elongation is largely responsible for decreased transcription of c-myc in differentiated HL60 cells. Nature 321:702-706. (Pubitemid 16044131)
-
(1986)
Nature
, vol.321
, Issue.6071
, pp. 702-706
-
-
Bentley, D.L.1
Groudine, M.2
-
16
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
DOI 10.1038/ng.2007.21, PII NG200721
-
Muse GW, et al. (2007) RNA polymerase is poised for activation across the genome. Nat Genet 39:1507-1511. (Pubitemid 350191341)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
17
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
DOI 10.1038/ng.2007.26, PII NG200726
-
Zeitlinger J, et al. (2007) RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39:1512-1516. (Pubitemid 350191345)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.-W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
18
-
-
34447098370
-
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88. (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
19
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada T, et al. (1998) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev 12:343-356. (Pubitemid 28084263)
-
(1998)
Genes and Development
, vol.12
, Issue.3
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
20
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi Y, et al. (1999) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97:41-51. (Pubitemid 29165888)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
21
-
-
67649648237
-
Control of inducible gene expression by signal-dependent transcriptional elongation
-
Hargreaves DC, Horng T, Medzhitov R (2009) Control of inducible gene expression by signal-dependent transcriptional elongation. Cell 138:129-145.
-
(2009)
Cell
, vol.138
, pp. 129-145
-
-
Hargreaves, D.C.1
Horng, T.2
Medzhitov, R.3
-
22
-
-
77954301966
-
TIF1gamma controls erythroid cell fate by regulating transcription elongation
-
Bai X, et al. (2010) TIF1gamma controls erythroid cell fate by regulating transcription elongation. Cell 142:133-143.
-
(2010)
Cell
, vol.142
, pp. 133-143
-
-
Bai, X.1
-
23
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl PB, et al. (2010) c-Myc regulates transcriptional pause release. Cell 141:432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
-
24
-
-
0029011873
-
Purification of P-TEFb, a transcription factor required for the transition into productive elongation
-
Marshall NF, Price DH (1995) Purification of P-TEFb, a transcription factor required for the transition into productive elongation. J Biol Chem 270:12335-12338.
-
(1995)
J Biol Chem
, vol.270
, pp. 12335-12338
-
-
Marshall, N.F.1
Price, D.H.2
-
25
-
-
0342748478
-
Domains in the SPT5 protein that modulate its transcriptional regulatory properties
-
DOI 10.1128/MCB.20.9.2970-2983.2000
-
Ivanov D, Kwak YT, Guo J, Gaynor RB (2000) Domains in the SPT5 protein that modulate its transcriptional regulatory properties. Mol Cell Biol 20:2970-2983. (Pubitemid 30215010)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.9
, pp. 2970-2983
-
-
Ivanov, D.1
Kwak, Y.T.2
Guo, J.3
Gaynor, R.B.4
-
26
-
-
0346095303
-
Dynamics of Human Immunodeficiency Virus Transcription: P-TEFb Phosphorylates RD and Dissociates Negative Effectors from the Transactivation Response Element
-
DOI 10.1128/MCB.24.2.787-795.2004
-
Fujinaga K, et al. (2004) Dynamics of human immunodeficiency virus transcription: PTEFb phosphorylates RD and dissociates negative effectors from the transactivation response element. Mol Cell Biol 24:787-795. (Pubitemid 38057929)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.2
, pp. 787-795
-
-
Fujinaga, K.1
Irwin, D.2
Huang, Y.3
Taube, R.4
Kurosu, T.5
Peterlin, B.M.6
-
27
-
-
30744449491
-
P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation
-
DOI 10.1016/j.molcel.2005.11.024, PII S1097276505018125
-
Yamada T, et al. (2006) P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Mol Cell 21:227-237. (Pubitemid 43099938)
-
(2006)
Molecular Cell
, vol.21
, Issue.2
, pp. 227-237
-
-
Yamada, T.1
Yamaguchi, Y.2
Inukai, N.3
Okamoto, S.4
Mura, T.5
Handa, H.6
-
29
-
-
49449116959
-
The splicing factor SC35 has an active role in transcriptional elongation
-
Lin S, Coutinho-Mansfield G, Wang D, Pandit S, Fu XD (2008) The splicing factor SC35 has an active role in transcriptional elongation. Nat Struct Mol Biol 15:819-826.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 819-826
-
-
Lin, S.1
Coutinho-Mansfield, G.2
Wang, D.3
Pandit, S.4
Fu, X.D.5
-
30
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
DOI 10.1126/science.1138341
-
Kapranov P, et al. (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316:1484-1488. (Pubitemid 46906616)
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
31
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
32
-
-
74549132843
-
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
-
Nechaev S, et al. (2010) Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327:335-338.
-
(2010)
Science
, vol.327
, pp. 335-338
-
-
Nechaev, S.1
-
33
-
-
69249215400
-
Divergent transcription: A new feature of active promoters
-
Seila AC, Core LJ, Lis JT, Sharp PA (2009) Divergent transcription: A new feature of active promoters. Cell Cycle 8:2557-2564.
-
(2009)
Cell Cycle
, vol.8
, pp. 2557-2564
-
-
Seila, A.C.1
Core, L.J.2
Lis, J.T.3
Sharp, P.A.4
-
34
-
-
46249092601
-
Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
-
DOI 10.1126/science.1155390
-
Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB (2008) Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites. Science 320:1643-1647. (Pubitemid 351931255)
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1643-1647
-
-
Sandberg, R.1
Neilson, J.R.2
Sarma, A.3
Sharp, P.A.4
Burge, C.B.5
-
35
-
-
77953882290
-
Esophageal squamous cell dysplasia and delayed differentiation with deletion of krüppel-like factor 4 in murine esophagus
-
Tetreault MP, et al. (2010) Esophageal squamous cell dysplasia and delayed differentiation with deletion of krüppel-like factor 4 in murine esophagus. Gastroenterology 139:171-181, e9.
-
(2010)
Gastroenterology
, vol.139
-
-
Tetreault, M.P.1
-
36
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
DOI 10.1038/ng1789, PII N1789
-
Carninci P, et al. (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 38:626-635. (Pubitemid 43927303)
-
(2006)
Nature Genetics
, vol.38
, Issue.6
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
Ponjavic, J.6
Semple, C.A.M.7
Taylor, M.S.8
Engstrom, P.G.9
Frith, M.C.10
Forrest, A.R.R.11
Alkema, W.B.12
Tan, S.L.13
Plessy, C.14
Kodzius, R.15
Ravasi, T.16
Kasukawa, T.17
Fukuda, S.18
Kanamori-Katayama, M.19
Kitazume, Y.20
Kawaji, H.21
Kai, C.22
Nakamura, M.23
Konno, H.24
Nakano, K.25
Mottagui-Tabar, S.26
Arner, P.27
Chesi, A.28
Gustincich, S.29
Persichetti, F.30
Suzuki, H.31
Grimmond, S.M.32
Wells, C.A.33
Orlando, V.34
Wahlestedt, C.35
Liu, E.T.36
Harbers, M.37
Kawai, J.38
Bajic, V.B.39
Hume, D.A.40
Hayashizaki, Y.41
more..
-
37
-
-
71149095052
-
Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation
-
Uhlenhaut NH, et al. (2009) Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation. Cell 139:1130-1142.
-
(2009)
Cell
, vol.139
, pp. 1130-1142
-
-
Uhlenhaut, N.H.1
-
38
-
-
56949101429
-
The LIM-homeodomain transcription factor LMX1B regulates expression of NF-kappa B target genes
-
Rascle A, et al. (2009) The LIM-homeodomain transcription factor LMX1B regulates expression of NF-kappa B target genes. Exp Cell Res 315:76-96.
-
(2009)
Exp Cell Res
, vol.315
, pp. 76-96
-
-
Rascle, A.1
-
39
-
-
77249098774
-
Stat3 is a negative regulator of intestinal tumor progression in Apc(Min) mice
-
Musteanu M, et al. (2010) Stat3 is a negative regulator of intestinal tumor progression in Apc(Min) mice. Gastroenterology 138:1003-1011, e1-e5.
-
(2010)
Gastroenterology
, vol.138
-
-
Musteanu, M.1
-
40
-
-
76349090199
-
CDK8 is a positive regulator of transcriptional elongation within the serum response network
-
Donner AJ, Ebmeier CC, Taatjes DJ, Espinosa JM (2010) CDK8 is a positive regulator of transcriptional elongation within the serum response network. Nat Struct Mol Biol 17: 194-201.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 194-201
-
-
Donner, A.J.1
Ebmeier, C.C.2
Taatjes, D.J.3
Espinosa, J.M.4
-
41
-
-
79959939884
-
Human mediator subunit MED26 functions as a docking site for transcription elongation factors
-
Takahashi H, et al. (2011) Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell 146:92-104.
-
(2011)
Cell
, vol.146
, pp. 92-104
-
-
Takahashi, H.1
-
42
-
-
70450192681
-
AIRE activated tissue specific genes have histone modifications associated with inactive chromatin
-
Org T, et al. (2009) AIRE activated tissue specific genes have histone modifications associated with inactive chromatin. Hum Mol Genet 18:4699-4710.
-
(2009)
Hum Mol Genet
, vol.18
, pp. 4699-4710
-
-
Org, T.1
-
43
-
-
78149477660
-
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
-
Gilchrist DA, et al. (2010) Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 143:540-551.
-
(2010)
Cell
, vol.143
, pp. 540-551
-
-
Gilchrist, D.A.1
-
44
-
-
0025735437
-
Defective thymic T cell activation by concanavalin A and anti-CD3 in autoimmune nonobese diabetic mice. Evidence for thymic T cell anergy that correlates with the onset of insulitis
-
Zipris D, Lazarus AH, Crow AR, Hadzija M, Delovitch TL (1991) Defective thymic T cell activation by concanavalin A and anti-CD3 in autoimmune nonobese diabetic mice. Evidence for thymic T cell anergy that correlates with the onset of insulitis. J Immunol 146:3763-3771.
-
(1991)
J Immunol
, vol.146
, pp. 3763-3771
-
-
Zipris, D.1
Lazarus, A.H.2
Crow, A.R.3
Hadzija, M.4
Delovitch, T.L.5
-
45
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson A, et al. (2008) Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134:521-533.
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
|