Use of multilocus variable-number tandem repeat analysis in molecular subtyping of Salmonella enterica serovar Typhi isolates

Journal of Medical Microbiology

Volumn 61, Issue 2, 2012, Pages 223-232

  Tien, Yung Yen ^a   Ushijima, Hiroshi ^b   Mizuguchi, Masashi ^c   Liang, Shiu Yun ^d   Chiou, Chien Shun ^d,e  

^a TAMKANG UNIVERSITY   (Taiwan)

^b AINO UNIVERSITY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d CENTER FOR DISEASE CONTROL   (Taiwan)

^e CHUNG SHAN MEDICAL UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE;

ALLELE; ARTICLE; BACTERIAL GENETICS; BACTERIAL INFECTION; BACTERIUM ISOLATION; GENETIC ANALYSIS; GENETIC VARIABILITY; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SALMONELLA ENTERICA; SALMONELLA TYPHI; SEROTYPE; TANDEM REPEAT;

DNA, BACTERIAL; HUMANS; MINISATELLITE REPEATS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; SALMONELLA TYPHI;

EID: 84855966406     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.037291-0     Document Type: Article

References (32)

1. Boxrud, D., Pederson-Gulrud, K., Wotton, J., Medus, C., Lyszkowicz, E., Besser, J. & Bartkus, J. M. (2007). Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J Clin Microbiol 45, 536-543.
2. Caugant, D. A., Frøholm, L. O., Bøvre, K., Holten, E., Frasch, C. E., Mocca, L. F., Zollinger, W. D. & Selander, R. K. (1986). Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease. Proc Natl Acad Sci U S A 83, 4927-4931.
3. Chang, C. H., Chang, Y. C., Underwood, A., Chiou, C. S. & Kao, C. Y. (2007). VNTRDB: a bacterial variable number tandem repeat locus database. Nucleic Acids Res 35 (Database issue), D416-D421.
4. Chiou, C. S., Liao, J. C., Liao, T. L., Li, C. C., Chou, C. Y., Chang, H. L., Yao, S. M. & Lee, Y. S. (2006). Molecular epidemiology and emergence of worldwide epidemic clones of Neisseria meningitidis in Taiwan. BMC Infect Dis 6, 25.
5. Chiou, C. S., Watanabe, H., Wang, Y. W., Wang, W. L., Terajima, J., Thong, K. L., Phung, D. C. & Tung, S. K. (2009). Utility of multilocus variable-number tandem-repeat analysis as a molecular tool for phylogenetic analysis of Shigella sonnei. J Clin Microbiol 47, 1149-1154.
6. Chiou, C. S., Hung, C. S., Torpdahl, M., Watanabe, H., Tung, S. K., Terajima, J., Liang, S. Y. & Wang, Y. W. (2010). Development and evaluation of multilocus variable number tandem repeat analysis for fine typing and phylogenetic analysis of Salmonella enterica serovar Typhimurium. Int J Food Microbiol 142, 67-73.
7. Connor, B. A. & Schwartz, E. (2005). Typhoid and paratyphoid fever in travellers. Lancet Infect Dis 5, 623-628.
8. Crump, J. A., Luby, S. P. & Mintz, E. D. (2004). The global burden of typhoid fever. Bull World Health Organ 82, 346-353.
9. Grundmann, H., Hori, S. & Tanner, G. (2001). Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol 39, 4190-4192.
10. Hunter, P. R. (1990). Reproducibility and indices of discriminatory power of microbial typing methods. J Clin Microbiol 28, 1903-1905.
11. Hyytia-Trees, E. K., Cooper, K., Ribot, E. M. & Gerner-Smidt, P. (2007). Recent developments and future prospects in subtyping of foodborne bacterial pathogens. Future Microbiol 2, 175-185.
12. Keim, P., Van Ert, M. N., Pearson, T., Vogler, A. J., Huynh, L. Y. & Wagner, D. M. (2004). Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 4, 205-213.
13. Kidgell, C., Reichard, U., Wain, J., Linz, B., Torpdahl, M., Dougan, G. & Achtman, M. (2002). Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol 2, 39-45.
14. Liang, S. Y., Watanabe, H., Terajima, J., Li, C. C., Liao, J. C., Tung, S. K. Chiou, C. S. (2007). Multilocus variable-number tandem-repeat analysis for molecular typing of Shigella sonnei. J Clin Microbiol 45, 3574-3580.
15. Liao, J. C., Li, C. C. & Chiou, C. S. (2006). Use of a multilocus variablenumber tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates. BMC Microbiol 6, 44.
16. Lindstedt, B. A., Heir, E., Gjernes, E. & Kapperud, G. (2003). DNA fingerprinting of Salmonella enterica subsp. enterica serovar typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J Clin Microbiol 41, 1469-1479.
17. Liu, Y., Lee, M. A., Ooi, E. E., Mavis, Y., Tan, A. L. & Quek, H. H. (2003). Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats. J Clin Microbiol 41, 4388-4394.
18. Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K. & other authors (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140-3145.
19. Marsh, J. W., O'Leary, M. M., Shutt, K. A., Pasculle, A. W., Johnson, S., Gerding, D. N., Muto, C. A. & Harrison, L. H. (2006). Multilocus variable-number tandem-repeat analysis for investigation of Clostridium difficile transmission in hospitals. J Clin Microbiol 44, 2558-2566.
20. McClelland, M., Sanderson, K. E., Clifton, S. W., Latreille, P., Porwollik, S., Sabo, A., Meyer, R., Bieri, T., Ozersky, P. & other authors (2004). Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet 36, 1268-1274.
21. Noller, A. C., McEllistrem, M. C., Pacheco, A. G., Boxrud, D. J. & Harrison, L. H. (2003). Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157: H7 isolates. J Clin Microbiol 41, 5389-5397.
22. Octavia, S. & Lan, R. (2007). Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates. J Clin Microbiol 45, 3795-3801.
23. Octavia, S. & Lan, R. (2009). Multiple-locus variable-number tandemrepeat analysis of Salmonella enterica serovar Typhi. J Clin Microbiol 47, 2369-2376.
24. Pourcel, C., André-Mazeaud, F., Neubauer, H., Ramisse, F. & Vergnaud, G. (2004). Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol 4, 22.
25. Ramisse, V., Houssu, P., Hernandez, E., Denoeud, F., Hilaire, V., Lisanti, O., Ramisse, F., Cavallo, J. D. & Vergnaud, G. (2004). Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J Clin Microbiol 42, 5722-5730.
26. Ribot, E. M., Fair, M. A., Gautom, R., Cameron, D. N., Hunter, S. B., Swaminathan, B. & Barrett, T. J. (2006). Standardization of pulsedfield gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis 3, 59-67.
27. Roumagnac, P., Weill, F. X., Dolecek, C., Baker, S., Brisse, S., Chinh, N. T., Le, T. A., Acosta, C. J., Farrar, J. & other authors (2006). Evolutionary history of Salmonella typhi. Science 314, 1301-1304.
28. Spratt, B. G. (2004). Exploring the concept of clonality in bacteria. Methods Mol Biol 266, 323-352.
29. Swaminathan, B., Gerner-Smidt, P., Ng, L. K., Lukinmaa, S., Kam, K. M., Rolando, S., Gutiérrez, E. P. & Binsztein, N. (2006). Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases. Foodborne Pathog Dis 3, 36-50.
30. Tien, Y. Y., Wang, Y. W., Tung, S. K., Liang, S. Y. & Chiou, C. S. (2011). Comparison of multilocus variable-number tandem repeat analysis and pulsed-field gel electrophoresis in molecular subtyping of Salmonella enterica serovars Paratyphi A. Diagn Microbiol Infect Dis 69, 1-6.
31. Torpdahl, M., Sørensen, G., Lindstedt, B. A. & Nielsen, E. M. (2007). Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections. Emerg Infect Dis 13, 388-395.
32. Wang, Y. W., Watanabe, H., Phung, D. C., Tung, S. K., Lee, Y. S., Terajima, J., Liang, S. Y. & Chiou, C. S. (2009). Multilocus variablenumber tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri. BMC Microbiol 9, 278.