메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Multilocus variable-number tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE CLUSTER; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; MOLECULAR PHYLOGENY; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PULSED FIELD GEL ELECTROPHORESIS; SEROTYPE; SHIGELLA FLEXNERI; VARIABLE NUMBER OF TANDEM REPEAT; BACTERIUM IDENTIFICATION; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; METHODOLOGY; PHYLOGENY;

EID: 74849108517     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-278     Document Type: Article
Times cited : (24)

References (25)
  • 2
    • 2142642312 scopus 로고    scopus 로고
    • Trends in population-based active surveillance for shigellosis and demographic variability in FoodNet sites, 1996-1999
    • 10.1086/381584. 15095187
    • Trends in population-based active surveillance for shigellosis and demographic variability in FoodNet sites, 1996-1999. B Shiferaw S Shallow R Marcus S Segler D Soderlund FP Hardnett T Van Gilder, Clin Infect Dis 2004 38 Suppl 3 175 180 10.1086/381584 15095187
    • (2004) Clin Infect Dis , vol.38 , Issue.SUPPL. 3 , pp. 19175-180
    • Shiferaw, B.1    Shallow, S.2    Marcus, R.3    Segler, S.4    Soderlund, D.5    Hardnett, F.P.6    Van Gilder, T.7
  • 3
    • 0023898453 scopus 로고
    • Suggestion to supplement Shigella flexneri classification scheme with the subserovar Shigella flexneri 4c: Phenotypic characteristics of strains
    • 3290245
    • Suggestion to supplement Shigella flexneri classification scheme with the subserovar Shigella flexneri 4c: phenotypic characteristics of strains. NS Pryamukhina NA Khomenko, J Clin Microbiol 1988 26 6 1147 1149 3290245
    • (1988) J Clin Microbiol , vol.26 , Issue.6 , pp. 1147-1149
    • Pryamukhina, N.S.1    Khomenko, N.A.2
  • 5
    • 0042208085 scopus 로고    scopus 로고
    • Conversion of Shigella flexneri serotype 2a to serotype y in a shigellosis patient due to a single amino acid substitution in the protein product of the bacterial glucosyltransferase gtrII gene
    • 10.1016/S0378-1097(03)00470-1. 12892893
    • Conversion of Shigella flexneri serotype 2a to serotype Y in a shigellosis patient due to a single amino acid substitution in the protein product of the bacterial glucosyltransferase gtrII gene. JH Chen WB Hsu CS Chiou CM Chen, FEMS Microbiol Lett 2003 224 2 277 283 10.1016/S0378-1097(03)00470-1 12892893
    • (2003) FEMS Microbiol Lett , vol.224 , Issue.2 , pp. 277-283
    • Chen, J.H.1    Hsu, W.B.2    Chiou, C.S.3    Chen, C.M.4
  • 7
    • 1342304133 scopus 로고    scopus 로고
    • EBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • 10.1128/JB.186.5.1518-1530.2004. 14973027
    • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. EJ Feil BC Li DM Aanensen WP Hanage BG Spratt, J Bacteriol 2004 186 5 1518 1530 10.1128/JB.186.5.1518-1530.2004 14973027
    • (2004) J Bacteriol , vol.186 , Issue.5 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 8
    • 33645721090 scopus 로고    scopus 로고
    • Building PulseNet International: An interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases
    • 10.1089/fpd.2006.3.36. 16602978
    • Building PulseNet International: an interconnected system of laboratory networks to facilitate timely public health recognition and response to foodborne disease outbreaks and emerging foodborne diseases. B Swaminathan P Gerner-Smidt LK Ng S Lukinmaa KM Kam S Rolando EP Gutierrez N Binsztein, Foodborne Pathog Dis 2006 3 1 36 50 10.1089/fpd.2006.3.36 16602978
    • (2006) Foodborne Pathog Dis , vol.3 , Issue.1 , pp. 36-50
    • Swaminathan, B.1    Gerner-Smidt, P.2    Ng, L.K.3    Lukinmaa, S.4    Kam, K.M.5    Rolando, S.6    Gutierrez, E.P.7    Binsztein, N.8
  • 10
    • 33746191690 scopus 로고    scopus 로고
    • Multilocus variable-number tandem-repeat analysis for investigation of Clostridium difficile transmission in Hospitals
    • 10.1128/JCM.02364-05. 16825380
    • Multilocus variable-number tandem-repeat analysis for investigation of Clostridium difficile transmission in Hospitals. JW Marsh MM O'Leary KA Shutt AW Pasculle S Johnson DN Gerding CA Muto LH Harrison, J Clin Microbiol 2006 44 7 2558 2566 10.1128/JCM.02364-05 16825380
    • (2006) J Clin Microbiol , vol.44 , Issue.7 , pp. 2558-2566
    • Marsh, J.W.1    O'Leary, M.M.2    Shutt, K.A.3    Pasculle, A.W.4    Johnson, S.5    Gerding, D.N.6    Muto, C.A.7    Harrison, L.H.8
  • 11
    • 22244459534 scopus 로고    scopus 로고
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
    • 10.1002/elps.200500096. 15937984
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. BA Lindstedt, Electrophoresis 2005 26 13 2567 2582 10.1002/elps.200500096 15937984
    • (2005) Electrophoresis , vol.26 , Issue.13 , pp. 2567-2582
    • Lindstedt, B.A.1
  • 12
    • 33847075382 scopus 로고    scopus 로고
    • Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis
    • 10.1128/JCM.01595-06. 17151203
    • Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. D Boxrud K Pederson-Gulrud J Wotton C Medus E Lyszkowicz J Besser JM Bartkus, J Clin Microbiol 2007 45 2 536 543 10.1128/JCM.01595-06 17151203
    • (2007) J Clin Microbiol , vol.45 , Issue.2 , pp. 536-543
    • Boxrud, D.1    Pederson-Gulrud, K.2    Wotton, J.3    Medus, C.4    Lyszkowicz, E.5    Besser, J.6    Bartkus, J.M.7
  • 13
    • 33745304795 scopus 로고    scopus 로고
    • Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates
    • 10.1186/1471-2180-6-44. 16686962
    • Use of a multilocus variable-number tandem repeat analysis method for molecular subtyping and phylogenetic analysis of Neisseria meningitidis isolates. JC Liao CC Li CS Chiou, BMC Microbiol 2006 6 1 44 10.1186/1471-2180-6- 44 16686962
    • (2006) BMC Microbiol , vol.6 , Issue.1 , pp. 44
    • Liao, J.C.1    Li, C.C.2    Chiou, C.S.3
  • 14
    • 36348991522 scopus 로고    scopus 로고
    • Multilocus Variable-Number Tandem Repeat Analysis for Molecular Typing of Shigella sonnei
    • 10.1128/JCM.00675-07. 17881552
    • Multilocus Variable-Number Tandem Repeat Analysis for Molecular Typing of Shigella sonnei. SY Liang H Watanabe J Terajima CC Li JC Liao SK Tung CS Chiou, J Clin Microbiol 2007 45 11 3574 3580 10.1128/JCM.00675-07 17881552
    • (2007) J Clin Microbiol , vol.45 , Issue.11 , pp. 3574-3580
    • Liang, S.Y.1    Watanabe, H.2    Terajima, J.3    Li, C.C.4    Liao, J.C.5    Tung, S.K.6    Chiou, C.S.7
  • 15
    • 65249083917 scopus 로고    scopus 로고
    • Utility of multilocus variable-number tandem-repeat analysis as a molecular tool for phylogenetic analysis of Shigella sonnei
    • 10.1128/JCM.01607-08. 19225095
    • Utility of multilocus variable-number tandem-repeat analysis as a molecular tool for phylogenetic analysis of Shigella sonnei. CS Chiou H Watanabe YW Wang WL Wang J Terajima KL Thong DC Phung SK Tung, J Clin Microbiol 2009 47 4 1149 1154 10.1128/JCM.01607-08 19225095
    • (2009) J Clin Microbiol , vol.47 , Issue.4 , pp. 1149-1154
    • Chiou, C.S.1    Watanabe, H.2    Wang, Y.W.3    Wang, W.L.4    Terajima, J.5    Thong, K.L.6    Phung, D.C.7    Tung, S.K.8
  • 16
    • 14944341467 scopus 로고    scopus 로고
    • Molecular epidemiology of Shigella flexneri in a long-stay psychiatric nursing center during 2001 to 2003
    • 10.1128/JCM.43.3.1353-1360.2005. 15750107
    • Molecular epidemiology of Shigella flexneri in a long-stay psychiatric nursing center during 2001 to 2003. YS Lee MC Liu CF Ko CH Lu YH Tseng, J Clin Microbiol 2005 43 3 1353 1360 10.1128/JCM.43.3.1353-1360.2005 15750107
    • (2005) J Clin Microbiol , vol.43 , Issue.3 , pp. 1353-1360
    • Lee, Y.S.1    Liu, M.C.2    Ko, C.F.3    Lu, C.H.4    Tseng, Y.H.5
  • 17
    • 33846076512 scopus 로고    scopus 로고
    • VNTRDB: A bacterial variable number tandem repeat locus database
    • 10.1093/nar/gkl872. 17175529
    • VNTRDB: a bacterial variable number tandem repeat locus database. CH Chang YC Chang A Underwood CS Chiou CY Kao, Nucleic Acids Res 2007 35 Database 416 421 10.1093/nar/gkl872 17175529
    • (2007) Nucleic Acids Res , Issue.DATABASE35 , pp. 4416-421
    • Chang, C.H.1    Chang, Y.C.2    Underwood, A.3    Chiou, C.S.4    Kao, C.Y.5
  • 18
    • 0348110225 scopus 로고    scopus 로고
    • Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates
    • 10.1128/JCM.41.12.5389-5397.2003. 14662916
    • Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates. AC Noller MC McEllistrem AG Pacheco DJ Boxrud LH Harrison, J Clin Microbiol 2003 41 12 5389 5397 10.1128/JCM.41.12.5389-5397.2003 14662916
    • (2003) J Clin Microbiol , vol.41 , Issue.12 , pp. 5389-5397
    • Noller, A.C.1    McEllistrem, M.C.2    Pacheco, A.G.3    Boxrud, D.J.4    Harrison, L.H.5
  • 19
    • 4844223197 scopus 로고    scopus 로고
    • Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis
    • 10.1186/1471-2180-4-22. 15186506
    • Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. C Pourcel F Andre-Mazeaud H Neubauer F Ramisse G Vergnaud, BMC Microbiol 2004 4 22 10.1186/1471-2180-4-22 15186506
    • (2004) BMC Microbiol , vol.4 , pp. 22
    • Pourcel, C.1    Andre-Mazeaud, F.2    Neubauer, H.3    Ramisse, F.4    Vergnaud, G.5
  • 20
    • 33645924046 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Neisseria meningitidis yields groupings similar to those obtained by multilocus sequence typing
    • 10.1128/JCM.44.4.1509-1518.2006. 16597884
    • Multiple-locus variable-number tandem repeat analysis of Neisseria meningitidis yields groupings similar to those obtained by multilocus sequence typing. LM Schouls A van der Ende M Damen I van de Pol, J Clin Microbiol 2006 44 4 1509 1518 10.1128/JCM.44.4.1509-1518.2006 16597884
    • (2006) J Clin Microbiol , vol.44 , Issue.4 , pp. 1509-1518
    • Schouls, L.M.1    Der Van, E.A.2    Damen, M.3    De Van, P.I.4
  • 21
    • 40749101543 scopus 로고    scopus 로고
    • Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp
    • 10.1128/JCM.02027-07. 18216214
    • Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp. O Gorge S Lopez V Hilaire O Lisanti V Ramisse G Vergnaud, J Clin Microbiol 2008 46 3 1026 1036 10.1128/JCM.02027-07 18216214
    • (2008) J Clin Microbiol , vol.46 , Issue.3 , pp. 1026-1036
    • Gorge, O.1    Lopez, S.2    Hilaire, V.3    Lisanti, O.4    Ramisse, V.5    Vergnaud, G.6
  • 22
    • 33645707707 scopus 로고    scopus 로고
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet
    • 10.1089/fpd.2006.3.59. 16602980
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. EM Ribot MA Fair R Gautom DN Cameron SB Hunter B Swaminathan TJ Barrett, Foodborne Pathog Dis 2006 3 1 59 67 10.1089/fpd.2006.3.59 16602980
    • (2006) Foodborne Pathog Dis , vol.3 , Issue.1 , pp. 59-67
    • Ribot, E.M.1    Fair, M.A.2    Gautom, R.3    Cameron, D.N.4    Hunter, S.B.5    Swaminathan, B.6    Barrett, T.J.7
  • 23
    • 0034757959 scopus 로고    scopus 로고
    • Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms
    • 10.1128/JCM.39.11.4190-4192.2001. 11682558
    • Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. H Grundmann S Hori G Tanner, J Clin Microbiol 2001 39 11 4190 4192 10.1128/JCM.39.11.4190- 4192.2001 11682558
    • (2001) J Clin Microbiol , vol.39 , Issue.11 , pp. 4190-4192
    • Grundmann, H.1    Hori, S.2    Tanner, G.3
  • 24
    • 0025063184 scopus 로고
    • Reproducibility and indices of discriminatory power of microbial typing methods
    • 2229371
    • Reproducibility and indices of discriminatory power of microbial typing methods. PR Hunter, J Clin Microbiol 1990 28 9 1903 1905 2229371
    • (1990) J Clin Microbiol , vol.28 , Issue.9 , pp. 1903-1905
    • Hunter, P.R.1
  • 25
    • 16444380292 scopus 로고    scopus 로고
    • Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing
    • 10.1111/j.1365-2672.2004.02532.x. 15752340
    • Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. C Keys S Kemper P Keim, J Appl Microbiol 2005 98 4 928 940 10.1111/j.1365-2672.2004.02532.x 15752340
    • (2005) J Appl Microbiol , vol.98 , Issue.4 , pp. 928-940
    • Keys, C.1    Kemper, S.2    Keim, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.