메뉴 건너뛰기




Volumn 13, Issue 2, 2012, Pages 191-199

Genomic approach towards personalized anticancer drug therapy

Author keywords

anticancer therapy; ensemble method; expression array; machine learning algorithm; personalized therapy; predictor genes

Indexed keywords

CISPLATIN; CYCLOPHOSPHAMIDE; DACTINOMYCIN; DOCETAXEL; DOXORUBICIN; FLUOROURACIL; FOLINIC ACID; GEMCITABINE; IRINOTECAN; OXALIPLATIN; PACLITAXEL; PLATINUM COMPLEX; VINCRISTINE;

EID: 84855921970     PISSN: 14622416     EISSN: 17448042     Source Type: Journal    
DOI: 10.2217/pgs.11.157     Document Type: Review
Times cited : (8)

References (35)
  • 1
    • 58149151278 scopus 로고    scopus 로고
    • The use of genomics in clinical trial design
    • Simon R. The use of genomics in clinical trial design. Clin. Cancer Res. 14(19), 5984-5993 (2008).
    • (2008) Clin. Cancer Res. , vol.14 , Issue.19 , pp. 5984-5993
    • Simon, R.1
  • 2
    • 45749127481 scopus 로고    scopus 로고
    • Predictive biomarkers of chemotherapy efficacy in colorectal cancer: Results from the UK MRC FOCUS trial
    • Braun MS, Richman SD, Quirke P et al. Predictive biomarkers of chemotherapy efficacy in colorectal cancer: results from the UK MRC FOCUS trial. J. Clin. Oncol. 26(16), 2690-2698 (2008).
    • (2008) J. Clin. Oncol. , vol.26 , Issue.16 , pp. 2690-2698
    • Braun, M.S.1    Richman, S.D.2    Quirke, P.3
  • 3
    • 77952697081 scopus 로고    scopus 로고
    • Chemotherapeutic drug susceptibility associated SNPs are enriched in expression quantitative trait loci
    • Gamazon ER, Huang RS, Cox NJ, Dolan ME. Chemotherapeutic drug susceptibility associated SNPs are enriched in expression quantitative trait loci. Proc. Natl Acad. Sci. USA 107(20), 9287-9292 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , Issue.20 , pp. 9287-9292
    • Gamazon, E.R.1    Huang, R.S.2    Cox, N.J.3    Dolan, M.E.4
  • 4
    • 77953022034 scopus 로고    scopus 로고
    • Implication of microRNAs in drug resistance for designing novel cancer therapy
    • Sarkar FH, Li Y, Wang Z, Kong D, Ali S. Implication of microRNAs in drug resistance for designing novel cancer therapy. Drug Resist. Update 13(3), 57-66 (2010).
    • (2010) Drug Resist. Update , vol.13 , Issue.3 , pp. 57-66
    • Sarkar, F.H.1    Li, Y.2    Wang, Z.3    Kong, D.4    Ali, S.5
  • 5
    • 71249140807 scopus 로고    scopus 로고
    • Evaluation of single-nucleotide polymorphism imputation using random forests
    • Schwarz DF, Szymczak S, Ziegler A, Konig IR. Evaluation of single-nucleotide polymorphism imputation using random forests. BMC Proc. 3(Suppl. 7), S65 (2009).
    • (2009) BMC Proc. , vol.3 , Issue.SUPPL. 7
    • Schwarz, D.F.1    Szymczak, S.2    Ziegler, A.3    Konig, I.R.4
  • 6
    • 41649114164 scopus 로고    scopus 로고
    • Enabling personalized cancer medicine through analysis of gene-expression patterns
    • Van't Veer LJ, Bernards R. Enabling personalized cancer medicine through analysis of gene-expression patterns. Nature 452(7187), 564-570 (2008).
    • (2008) Nature , vol.452 , Issue.7187 , pp. 564-570
    • Van'T Veer, L.J.1    Bernards, R.2
  • 8
    • 79952116721 scopus 로고    scopus 로고
    • A gene expression signature that predicts the therapeutic response of the basal-like breast cancer to neoadjuvant chemotherapy
    • Lin Y, Lin S, Watson M et al. A gene expression signature that predicts the therapeutic response of the basal-like breast cancer to neoadjuvant chemotherapy. Breast Cancer Res. Treat. 123(3), 691-699 (2010).
    • (2010) Breast Cancer Res. Treat. , vol.123 , Issue.3 , pp. 691-699
    • Lin, Y.1    Lin, S.2    Watson, M.3
  • 9
    • 34247138423 scopus 로고    scopus 로고
    • Gene expression profiles as biomarkers for the prediction of chemotherapy drug response in human tumour cells
    • DOI 10.1097/CAD.0b013e3280262427, PII 0000181320070600000001
    • Parissenti AM, Hembruff SL, Villeneuve DJ, Veitch Z, Guo B, Eng J. Gene expression profiles as biomarkers for the prediction of chemotherapy drug response in human tumour cells. Anticancer Drugs 18(5), 499-523 (2007). (Pubitemid 46597406)
    • (2007) Anti-Cancer Drugs , vol.18 , Issue.5 , pp. 499-523
    • Parissenti, A.M.1    Hembruff, S.L.2    Villeneuve, D.J.3    Veitch, Z.4    Guo, B.5    Eng, J.6
  • 10
    • 67649538202 scopus 로고    scopus 로고
    • The multiplex bead array approach to identifying serum biomarkers associated with breast cancer
    • Kim BK, Lee JW, Park PJ et al. The multiplex bead array approach to identifying serum biomarkers associated with breast cancer. Breast Cancer Res. 11(2), R22 (2009).
    • (2009) Breast Cancer Res. , vol.11 , Issue.2
    • Kim, B.K.1    Lee, J.W.2    Park, P.J.3
  • 11
    • 48549094895 scopus 로고    scopus 로고
    • A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
    • Statnikov A, Wang L, Aliferis CF. A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification. BMC Bioinformatics 9, 319 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 319
    • Statnikov, A.1    Wang, L.2    Aliferis, C.F.3
  • 17
    • 70449569064 scopus 로고    scopus 로고
    • Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: A study to determine feasibility and reproducibility in the context of clinical care
    • Tebbit CL, Zhai J, Untch BR et al. Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care. Breast Cancer Res. Treat. 118(3), 635-643 (2009).
    • (2009) Breast Cancer Res. Treat. , vol.118 , Issue.3 , pp. 635-643
    • Tebbit, C.L.1    Zhai, J.2    Untch, B.R.3
  • 20
    • 70350536600 scopus 로고    scopus 로고
    • Concordant gene expression signatures predict clinical outcomes of cancer patients undergoing systemic therapy
    • Williams PD, Cheon S, Havaleshko DM et al. Concordant gene expression signatures predict clinical outcomes of cancer patients undergoing systemic therapy. Cancer Res. 69(21), 8302-8309 (2009).
    • (2009) Cancer Res. , vol.69 , Issue.21 , pp. 8302-8309
    • Williams, P.D.1    Cheon, S.2    Havaleshko, D.M.3
  • 21
    • 59149088407 scopus 로고    scopus 로고
    • Repeatability of published microarray gene expression analyses
    • Ioannidis JP, Allison DB, Ball CA et al. Repeatability of published microarray gene expression analyses. Nat. Genet. 41(2), 149-155 (2009).
    • (2009) Nat. Genet. , vol.41 , Issue.2 , pp. 149-155
    • Ioannidis, J.P.1    Allison, D.B.2    Ball, C.A.3
  • 22
    • 79956088412 scopus 로고    scopus 로고
    • What information should be required to support clinical 'omics' publications?
    • doi:10.1373/clinchem.2010.158618 Epub ahead of print
    • Baggerly KA, Coombes KR. What information should be required to support clinical 'omics' publications? Clin. Chem. doi:10.1373/clinchem.2010.158618 (2011) (Epub ahead of print).
    • (2011) Clin. Chem
    • Baggerly, K.A.1    Coombes, K.R.2
  • 23
    • 78650349223 scopus 로고    scopus 로고
    • Do predictive signatures really predict response to cancer chemotherapy?
    • Borst P, Wessels L. Do predictive signatures really predict response to cancer chemotherapy? Cell Cycle 9(24), 4836-4840 (2010).
    • (2010) Cell Cycle , vol.9 , Issue.24 , pp. 4836-4840
    • Borst, P.1    Wessels, L.2
  • 24
    • 74549123264 scopus 로고    scopus 로고
    • Prospective comparison of clinical and genomic multivariate predictors of response to neoadjuvant chemotherapy in breast cancer
    • Lee JK, Coutant C, Kim YC et al. Prospective comparison of clinical and genomic multivariate predictors of response to neoadjuvant chemotherapy in breast cancer. Clin. Cancer Res. 16(2), 711-718 (2010).
    • (2010) Clin. Cancer Res. , vol.16 , Issue.2 , pp. 711-718
    • Lee, J.K.1    Coutant, C.2    Kim, Y.C.3
  • 25
    • 79251528216 scopus 로고    scopus 로고
    • Retraction-validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: A substudy of the EORTC 10994/BIG 00-01 clinical trial
    • Bonnefoi H, Potti A, Delorenzi M et al. Retraction-validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial. Lancet Oncol. 12(2), 116 (2011).
    • (2011) Lancet Oncol. , vol.12 , Issue.2 , pp. 116
    • Bonnefoi, H.1    Potti, A.2    Delorenzi, M.3
  • 26
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • DOI 10.1093/bioinformatics/btm344
    • Saeys Y, Inza I, Larranaga P. A review of feature selection techniques in bioinformatics. Bioinformatics 23(19), 2507-2517 (2007). (Pubitemid 350048351)
    • (2007) Bioinformatics , vol.23 , Issue.19 , pp. 2507-2517
    • Saeys, Y.1    Inza, I.2    Larranaga, P.3
  • 27
    • 33645295228 scopus 로고    scopus 로고
    • The chemosensitivity to therapy of childhood early B acute lymphoblastic leukemia could be determined by the combined expression of CD34, SPI-B and BCR genes
    • Talby L, Chambost H, Roubaud MC et al. The chemosensitivity to therapy of childhood early B acute lymphoblastic leukemia could be determined by the combined expression of CD34, SPI-B and BCR genes. Leuk. Res. 30(6), 665-676 (2006).
    • (2006) Leuk. Res. , vol.30 , Issue.6 , pp. 665-676
    • Talby, L.1    Chambost, H.2    Roubaud, M.C.3
  • 29
    • 63449130278 scopus 로고    scopus 로고
    • Predicting relapse in favorable histology Wilms tumor using gene expression analysis: A report from the Renal Tumor Committee of the Children's Oncology Group
    • Huang CC, Gadd S, Breslow N et al. Predicting relapse in favorable histology Wilms tumor using gene expression analysis: a report from the Renal Tumor Committee of the Children's Oncology Group. Clin. Cancer Res. 15(5), 1770-1778 (2009).
    • (2009) Clin. Cancer Res. , vol.15 , Issue.5 , pp. 1770-1778
    • Huang, C.C.1    Gadd, S.2    Breslow, N.3
  • 30
    • 84855356469 scopus 로고    scopus 로고
    • Potential responders to FOLFOX therapy for colorectal cancer by Random
    • doi:10.1038/bjc.2011.505 Epub ahead of print
    • Tsuji S, Midorikawa Y, Takahashi T et al. Potential responders to FOLFOX therapy for colorectal cancer by Random Forests analysis. Br. J. Cancer doi:10.1038/bjc.2011.505 (2011) (Epub ahead of print).
    • (2011) Br. J. Cancer
    • Tsuji, S.1    Midorikawa, Y.2    Takahashi, T.3
  • 32
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • Diaz-Uriarte R, Alvarez De Andres S. Gene selection and classification of microarray data using random forest. BMC Bioinformatics 7, 3 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 3
    • Diaz-Uriarte, R.1    Alvarez De Andres, S.2
  • 34
    • 68349157474 scopus 로고    scopus 로고
    • The validation and assessment of machine-learning: A game of prediction from high-dimensional data
    • Pers TH, Albrechtsen A, Holst C, Sorensen TI, Gerds TA. The validation and assessment of machine-learning: a game of prediction from high-dimensional data. PLoS ONE 4(8), e6287 (2009).
    • (2009) PLoS ONE , vol.4 , Issue.8
    • Pers, T.H.1    Albrechtsen, A.2    Holst, C.3    Sorensen, T.I.4    Gerds, T.A.5
  • 35
    • 78650735473 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) II study of common practices for the development and validation of microarray-based predictive models
    • Shi L, Campbell G, Jones WD et al. The MicroArray Quality Control (MAQC) II study of common practices for the development and validation of microarray-based predictive models. Nat. Biotechnol. 28(8), 827-838 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , Issue.8 , pp. 827-838
    • Shi, L.1    Campbell, G.2    Jones, W.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.