-
1
-
-
35248864435
-
Translation-invariant monotone systems and a global convergence result for enzymatic futile cycles
-
Angeli, D., & Sontag, E. D. (2008). Translation-invariant monotone systems and a global convergence result for enzymatic futile cycles. Nonlinear Anal., Real World Appl., 9(1), 128-140.
-
(2008)
Nonlinear Anal., Real World Appl.
, vol.9
, Issue.1
, pp. 128-140
-
-
Angeli, D.1
Sontag, E.D.2
-
2
-
-
0016687069
-
Sigmoid curves, non-linear double-reciprocal plots and allosterism
-
Bardsley, W. G., & Childs, R. E. (1975). Sigmoid curves, non-linear double-reciprocal plots and allosterism. Biochem. J., 149, 313-328.
-
(1975)
Biochem. J.
, vol.149
, pp. 313-328
-
-
Bardsley, W.G.1
Childs, R.E.2
-
3
-
-
33644966561
-
Effects of sequestration on signal transduction cascades
-
Bluthgen, N., Bruggeman, F. J., Legewie, S., Herzel, H., Westerhoff, H. V., & Kholodenko, B. N. (2006). Effects of sequestration on signal transduction cascades. FEBS J., 273, 895-906.
-
(2006)
FEBS J.
, vol.273
, pp. 895-906
-
-
Bluthgen, N.1
Bruggeman, F.J.2
Legewie, S.3
Herzel, H.4
Westerhoff, H.V.5
Kholodenko, B.N.6
-
4
-
-
6344223567
-
Optimal length and signal amplification in weakly activated signal transduction cascades
-
Chaves, M., Sontag, E. D., & Dinerstein, R. J. (2004). Optimal length and signal amplification in weakly activated signal transduction cascades. J. Phys. Chem. B, 108(39), 15311-15320.
-
(2004)
J. Phys. Chem. B
, vol.108
, Issue.39
, pp. 15311-15320
-
-
Chaves, M.1
Sontag, E.D.2
Dinerstein, R.J.3
-
5
-
-
37549009180
-
Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
-
Conradi, C., Flockerzi, D., & Raisch, J. (2008). Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space. Math. Biosci., 211, 105-131.
-
(2008)
Math. Biosci.
, vol.211
, pp. 105-131
-
-
Conradi, C.1
Flockerzi, D.2
Raisch, J.3
-
7
-
-
27844475135
-
Multiple equilibria in complex chemical reaction networks. I. The injectivity property
-
(electronic)
-
Craciun, G., & Feinberg, M. (2005). Multiple equilibria in complex chemical reaction networks. I. The injectivity property. SIAM J. Appl. Math., 65(5), 1526-1546 (electronic).
-
(2005)
SIAM J. Appl. Math.
, vol.65
, Issue.5
, pp. 1526-1546
-
-
Craciun, G.1
Feinberg, M.2
-
8
-
-
33745027709
-
Multiple equilibria in complex chemical reaction networks. II. The species-reaction graph
-
(electronic)
-
Craciun, G., & Feinberg, M. (2006). Multiple equilibria in complex chemical reaction networks. II. The species-reaction graph. SIAM J. Appl. Math., 66(4), 1321-1338 (electronic).
-
(2006)
SIAM J. Appl. Math.
, vol.66
, Issue.4
, pp. 1321-1338
-
-
Craciun, G.1
Feinberg, M.2
-
9
-
-
77951199596
-
Multiple equilibria in complex chemical reaction networks: semiopen mass action systems
-
Craciun, G., & Feinberg, M. (2010). Multiple equilibria in complex chemical reaction networks: semiopen mass action systems. SIAM J. Appl. Math., 70(6), 1859-1877.
-
(2010)
SIAM J. Appl. Math.
, vol.70
, Issue.6
, pp. 1859-1877
-
-
Craciun, G.1
Feinberg, M.2
-
10
-
-
84855906180
-
-
(submitted)
-
Feliu, E., Andersen, L., Knudsen, M., & Wiuf, C. (2010). A general mathematical framework suitable for studying signaling cascades (submitted).
-
(2010)
A general mathematical framework suitable for studying signaling cascades
-
-
Feliu, E.1
Andersen, L.2
Knudsen, M.3
Wiuf, C.4
-
11
-
-
0037605637
-
Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
-
Ferrell, J. E., & Xiong, W. (2001). Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. Chaos, 11, 227-236.
-
(2001)
Chaos
, vol.11
, pp. 227-236
-
-
Ferrell, J.E.1
Xiong, W.2
-
12
-
-
0001424903
-
An amplified sensitivity arising from covalent modification in biological systems
-
Goldbeter, A., & Koshland, D. E. (1981). An amplified sensitivity arising from covalent modification in biological systems. Proc. Natl. Acad. Sci. USA, 78, 6840-6844.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 6840-6844
-
-
Goldbeter, A.1
Koshland, D.E.2
-
13
-
-
0021715523
-
Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects
-
Goldbeter, A., & Koshland, D. E. (1984). Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects. J. Biol. Chem., 259, 14441-14447.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 14441-14447
-
-
Goldbeter, A.1
Koshland, D.E.2
-
14
-
-
26844571282
-
Multisite protein phosphorylation makes a good threshold but can be a poor switch
-
Gunawardena, J. (2005). Multisite protein phosphorylation makes a good threshold but can be a poor switch. Proc. Natl. Acad. Sci. USA, 102, 14617-14622.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 14617-14622
-
-
Gunawardena, J.1
-
15
-
-
36849019999
-
Distributivity and processivity in multisite phosphorylation can be distinguished through steady-state invariants
-
Gunawardena, J. (2007). Distributivity and processivity in multisite phosphorylation can be distinguished through steady-state invariants. Biophys. J., 93, 3828-3834.
-
(2007)
Biophys. J.
, vol.93
, pp. 3828-3834
-
-
Gunawardena, J.1
-
16
-
-
77951796163
-
Biological systems theory
-
Gunawardena, J. (2010). Biological systems theory. Science, 328, 581-582.
-
(2010)
Science
, vol.328
, pp. 581-582
-
-
Gunawardena, J.1
-
17
-
-
0036285634
-
Mathematical models of protein kinase signal transduction
-
Heinrich, R., Neel, B. G., & Rapoport, T. A. (2002). Mathematical models of protein kinase signal transduction. Mol. Cell, 9, 957-970.
-
(2002)
Mol. Cell
, vol.9
, pp. 957-970
-
-
Heinrich, R.1
Neel, B.G.2
Rapoport, T.A.3
-
18
-
-
0029790351
-
Ultrasensitivity in the mitogen-activated protein kinase cascade
-
Huang, C. Y., & Ferrell, J. E. (1996). Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc. Natl. Acad. Sci. USA, 93, 10078-10083.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10078-10083
-
-
Huang, C.Y.1
Ferrell, J.E.2
-
19
-
-
84855907645
-
Über die Bedingungen, unter welchen eine Gleichung nur Wurzeln mit negativen reellen Theilen besitzt
-
Ascona1995Internat. ser. numer. math.Reprinted from Math. Ann., 44, 273-284 (1895). [JFM 26.0119.03], Basel: Birkhäuser
-
Hurwitz, A. (1996). Über die Bedingungen, unter welchen eine Gleichung nur Wurzeln mit negativen reellen Theilen besitzt. In Internat. ser. numer. math.: Vol. 121. Stability theory (pp. 239-249), Ascona, 1995. Basel: Birkhäuser. Reprinted from Math. Ann., 44, 273-284 (1895). [JFM 26. 0119. 03].
-
(1996)
Stability Theory
, vol.121
, pp. 239-249
-
-
Hurwitz, A.1
-
20
-
-
0031559933
-
Quantification of information transfer via cellular signal transduction pathways
-
Kholodenko, B. N., Hoek, J. B., Westerhoff, H. V., & Brown, G. C. (1997). Quantification of information transfer via cellular signal transduction pathways. FEBS Lett., 414, 430-434.
-
(1997)
FEBS Lett.
, vol.414
, pp. 430-434
-
-
Kholodenko, B.N.1
Hoek, J.B.2
Westerhoff, H.V.3
Brown, G.C.4
-
21
-
-
0012783530
-
-
3rd edn., Graduate texts in mathematics, New York: Springer
-
Lang, S. (2002). Graduate texts in mathematics: Vol. 211. Algebra (3rd ed.). New York: Springer.
-
(2002)
Algebra
, vol.211
-
-
Lang, S.1
-
22
-
-
36248946925
-
Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction
-
Legewie, S., Bluthgen, N., Schafer, R., & Herzel, H. (2005). Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput. Biol., 1, e54.
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
Legewie, S.1
Bluthgen, N.2
Schafer, R.3
Herzel, H.4
-
23
-
-
37049044629
-
An enzyme cascade in the blood clotting mechanism, and its function as a biochemical amplifier
-
MacFarlane, R. G. (1964). An enzyme cascade in the blood clotting mechanism, and its function as a biochemical amplifier. Nature, 202, 498-499.
-
(1964)
Nature
, vol.202
, pp. 498-499
-
-
Macfarlane, R.G.1
-
24
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich, N. I., Hoek, J. B., & Kholodenko, B. N. (2004). Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol., 164, 353-359.
-
(2004)
J. Cell Biol.
, vol.164
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
25
-
-
0022517716
-
Zero-order ultrasensitivity in the regulation of glycogen phosphorylase
-
Meinke, M. H., Bishop, J. S., & Edstrom, R. D. (1986). Zero-order ultrasensitivity in the regulation of glycogen phosphorylase. Proc. Natl. Acad. Sci. USA, 83, 2865-2868.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 2865-2868
-
-
Meinke, M.H.1
Bishop, J.S.2
Edstrom, R.D.3
-
26
-
-
33747429073
-
Bistability from double phosphorylation in signal transduction. Kinetic and structural requirements
-
Ortega, F., Garces, J. L., Mas, F., Kholodenko, B. N., & Cascante, M. (2006). Bistability from double phosphorylation in signal transduction. Kinetic and structural requirements. FEBS J., 273, 3915-3926.
-
(2006)
FEBS J.
, vol.273
, pp. 3915-3926
-
-
Ortega, F.1
Garces, J.L.2
Mas, F.3
Kholodenko, B.N.4
Cascante, M.5
-
27
-
-
34848893336
-
Bistability and oscillations in the Huang-Ferrell model of MAPK signaling
-
Qiao, L., Nachbar, R. B., Kevrekidis, I. G., & Shvartsman, S. Y. (2007). Bistability and oscillations in the Huang-Ferrell model of MAPK signaling. PLoS Comput. Biol., 3, 1819-1826.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 1819-1826
-
-
Qiao, L.1
Nachbar, R.B.2
Kevrekidis, I.G.3
Shvartsman, S.Y.4
-
28
-
-
64149132189
-
The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model
-
Qu, Z., & Vondriska, T. M. (2009). The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model. Phys. Biol., 6, 016007.
-
(2009)
Phys. Biol.
, vol.6
, pp. 016007
-
-
Qu, Z.1
Vondriska, T.M.2
-
29
-
-
51049120095
-
On sensitivity amplification in intracellular signaling cascades
-
Racz, E., & Slepchenko, B. M. (2008). On sensitivity amplification in intracellular signaling cascades. Phys. Biol., 5, 036004.
-
(2008)
Phys. Biol.
, vol.5
, pp. 036004
-
-
Racz, E.1
Slepchenko, B.M.2
-
30
-
-
32044463378
-
Kinetic models of phosphorylation cycles: a systematic approach using the rapid-equilibrium approximation for protein-protein interactions
-
Salazar, C., & Höfer, T. (2006). Kinetic models of phosphorylation cycles: a systematic approach using the rapid-equilibrium approximation for protein-protein interactions. Biosystems, 83, 195-206.
-
(2006)
Biosystems
, vol.83
, pp. 195-206
-
-
Salazar, C.1
Höfer, T.2
-
31
-
-
66249102308
-
Multisite protein phosphorylation-from molecular mechanisms to kinetic models
-
Salazar, C., & Höfer, T. (2009). Multisite protein phosphorylation-from molecular mechanisms to kinetic models. FEBS J., 276, 3177-3198.
-
(2009)
FEBS J.
, vol.276
, pp. 3177-3198
-
-
Salazar, C.1
Höfer, T.2
-
32
-
-
77949398351
-
Structural sources of robustness in biochemical reaction networks
-
Shinar, G., & Feinberg, M. (2010). Structural sources of robustness in biochemical reaction networks. Science, 327, 1389-1391.
-
(2010)
Science
, vol.327
, pp. 1389-1391
-
-
Shinar, G.1
Feinberg, M.2
-
33
-
-
70350575331
-
The rational parameterization theorem for multisite post-translational modification systems
-
Thomson, M., & Gunawardena, J. (2009a). The rational parameterization theorem for multisite post-translational modification systems. J. Theor. Biol., 261, 626-636.
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 626-636
-
-
Thomson, M.1
Gunawardena, J.2
-
34
-
-
67650360968
-
Unlimited multistability in multisite phosphorylation systems
-
Thomson, M., & Gunawardena, J. (2009b). Unlimited multistability in multisite phosphorylation systems. Nature, 460, 274-277.
-
(2009)
Nature
, vol.460
, pp. 274-277
-
-
Thomson, M.1
Gunawardena, J.2
-
35
-
-
41849098863
-
A hidden feedback in signaling cascades is revealed
-
Ventura, A. C., Sepulchre, J. A., & Merajver, S. D. (2008). A hidden feedback in signaling cascades is revealed. PLoS Comput. Biol., 4, e1000, 041.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Ventura, A.C.1
Sepulchre, J.A.2
Merajver, S.D.3
-
36
-
-
42149099412
-
On the number of steady states in a multiple futile cycle
-
Wang, L., & Sontag, E. D. (2008). On the number of steady states in a multiple futile cycle. J. Math. Biol., 57, 29-52.
-
(2008)
J. Math. Biol.
, vol.57
, pp. 29-52
-
-
Wang, L.1
Sontag, E.D.2
-
37
-
-
27944442272
-
Quorum sensing: cell-to-cell communication in bacteria
-
Waters, C. M., & Bassler, B. L. (2005). Quorum sensing: cell-to-cell communication in bacteria. Annu. Rev. Cell Dev. Biol., 21, 319-346.
-
(2005)
Annu. Rev. Cell Dev. Biol.
, vol.21
, pp. 319-346
-
-
Waters, C.M.1
Bassler, B.L.2
|