-
1
-
-
0003880161
-
-
Fourth Edition. Garland Science
-
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, et al. (2001) Molecular biology of the cell. Fourth Edition. Garland Science.
-
(2001)
Molecular biology of the cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
-
2
-
-
33644524741
-
Cell-signaling dynamics in time and space
-
Kholodenko BN (2006) Cell-signaling dynamics in time and space. Nat Rev Mol Cell Biol 7: 165-176.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 165-176
-
-
Kholodenko, B.N.1
-
3
-
-
33644966561
-
Effects of sequestration on signal transduction cascades
-
Blüthgen N, Bruggeman FJ, Legewie S, Herzel H, Westerhoff HV, et al. (2006) Effects of sequestration on signal transduction cascades. FEBS J 237: 895-906.
-
(2006)
FEBS J
, vol.237
, pp. 895-906
-
-
Blüthgen, N.1
Bruggeman, F.J.2
Legewie, S.3
Herzel, H.4
Westerhoff, H.V.5
-
4
-
-
0037022274
-
Product dependence and bifunctionality compromise the ultrasensitivity of signal transduction cascades
-
Ortega F, Acerenza L, Westerhoff HV, Mas F, Cascante M (2002) Product dependence and bifunctionality compromise the ultrasensitivity of signal transduction cascades. Proc Natl Acad Sci U S A 99: 1170-1175.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 1170-1175
-
-
Ortega, F.1
Acerenza, L.2
Westerhoff, H.V.3
Mas, F.4
Cascante, M.5
-
5
-
-
0036111831
-
Attenuation of noise in ultrasensitive signaling cascades
-
Thattai M, van Oudenaarden A (2002) Attenuation of noise in ultrasensitive signaling cascades. Biophys J 82: 2943-2950.
-
(2002)
Biophys J
, vol.82
, pp. 2943-2950
-
-
Thattai, M.1
van Oudenaarden, A.2
-
8
-
-
0029790351
-
Ultrasensitivity in the mitogen-activated protein kinase cascade
-
Huang CY, Ferrell JE Jr (1996) Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc Natl Acad Sci U S A 93: 10078-10083.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 10078-10083
-
-
Huang, C.Y.1
Ferrell Jr, J.E.2
-
9
-
-
0034019315
-
Negative feedback and ultra-sensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
-
Kholodenko BN (2000) Negative feedback and ultra-sensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur J Biochem 267: 1583-1588.
-
(2000)
Eur J Biochem
, vol.267
, pp. 1583-1588
-
-
Kholodenko, B.N.1
-
10
-
-
17644446947
-
How robust are switches in intracellular signaling cascades?
-
Blüthgen N, Herzel H (2003) How robust are switches in intracellular signaling cascades? J Theor Biol 225: 293-300.
-
(2003)
J Theor Biol
, vol.225
, pp. 293-300
-
-
Blüthgen, N.1
Herzel, H.2
-
11
-
-
0001424903
-
An amplified sensitivity arising from covalent modification in biological systems
-
Goldbeter A, Koshland DE Jr (1981) An amplified sensitivity arising from covalent modification in biological systems. Proc Natl Acad Sci U S A 78: 6840-6844.
-
(1981)
Proc Natl Acad Sci U S A
, vol.78
, pp. 6840-6844
-
-
Goldbeter, A.1
Koshland Jr, D.E.2
-
12
-
-
0026006671
-
A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase
-
Goldbeter A (1991) A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. Proc Natl Acad Sci U S A 88: 9107-9111.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 9107-9111
-
-
Goldbeter, A.1
-
13
-
-
8144229504
-
A biochemical oscillator explains several aspects of Myxococcus xanthus behavior during development
-
Igoshin OA, Goldbeter A, Kaiser D, Oster G (2004) A biochemical oscillator explains several aspects of Myxococcus xanthus behavior during development. Proc Natl Acad Sci U S A 101: 15760-15765.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 15760-15765
-
-
Igoshin, O.A.1
Goldbeter, A.2
Kaiser, D.3
Oster, G.4
-
14
-
-
1242274449
-
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
-
Angeli D, Ferrell JE Jr, Sontag ED (2004) Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proc Natl Acad Sci U S A 101: 1822-1827.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 1822-1827
-
-
Angeli, D.1
Ferrell Jr, J.E.2
Sontag, E.D.3
-
16
-
-
33947614062
-
Modeling the septation initiation network (SIN) in fission yeast cells
-
Csiksz-Nagy A, Kapuy O, Gyorffy B, Tyson JJ, Novk B (2007) Modeling the septation initiation network (SIN) in fission yeast cells. Curr Genet 51: 245-255.
-
(2007)
Curr Genet
, vol.51
, pp. 245-255
-
-
Csiksz-Nagy, A.1
Kapuy, O.2
Gyorffy, B.3
Tyson, J.J.4
Novk, B.5
-
17
-
-
0036285634
-
Mathematical models of protein kinase signal transduction
-
Heinrich R, Neel BG, Rapoport TA (2002) Mathematical models of protein kinase signal transduction. Mol Cell 9: 957-970.
-
(2002)
Mol Cell
, vol.9
, pp. 957-970
-
-
Heinrich, R.1
Neel, B.G.2
Rapoport, T.A.3
-
18
-
-
11844299601
-
Optimal phosphorylation step number of intracellular signal-transduction pathway
-
Nakabayashi J, Sasaki A (2005) Optimal phosphorylation step number of intracellular signal-transduction pathway. Theor Biol 233: 413-421.
-
(2005)
Theor Biol
, vol.233
, pp. 413-421
-
-
Nakabayashi, J.1
Sasaki, A.2
-
19
-
-
33845460324
-
Role of cascades in converting oscillatory signals into stationary step-like responses
-
Marhl M, Grubelnik V (2007) Role of cascades in converting oscillatory signals into stationary step-like responses. Biosystems 87: 58-67.
-
(2007)
Biosystems
, vol.87
, pp. 58-67
-
-
Marhl, M.1
Grubelnik, V.2
-
20
-
-
34147183345
-
Approximations and their consequences for dynamic modelling of signal transduction pathways
-
Millat T, Bullinger E, Rohwer J, Wolkenhauer O (2006) Approximations and their consequences for dynamic modelling of signal transduction pathways. Math Biosci 207: 40-57.
-
(2006)
Math Biosci
, vol.207
, pp. 40-57
-
-
Millat, T.1
Bullinger, E.2
Rohwer, J.3
Wolkenhauer, O.4
-
21
-
-
34848887670
-
Competing docking interactions can bring about bistability in the MAPK cascade
-
Legewie S, Schoeberl B, Blüthgen N, Herzel H (2007) Competing docking interactions can bring about bistability in the MAPK cascade. Biophys J. 93: 2279-2288.
-
(2007)
Biophys J
, vol.93
, pp. 2279-2288
-
-
Legewie, S.1
Schoeberl, B.2
Blüthgen, N.3
Herzel, H.4
-
22
-
-
50549188738
-
The kinetics of enzyme-catalyzed reactions with two or more substrates or products II. Inhibition: Nomenclature and theory
-
Cleland W W (1963) The kinetics of enzyme-catalyzed reactions with two or more substrates or products II. Inhibition: Nomenclature and theory. Biochim. Biophys. Acta 67: 173-187.
-
(1963)
Biochim. Biophys. Acta
, vol.67
, pp. 173-187
-
-
Cleland, W.W.1
-
23
-
-
32044463378
-
Kinetic models of phosphorylation cycles: A systematic approach using the rapid-equilibrium approximation for protein-protein interactions
-
Salazar C, Höfer T (2006) Kinetic models of phosphorylation cycles: a systematic approach using the rapid-equilibrium approximation for protein-protein interactions. Biosystems 83: 195-206.
-
(2006)
Biosystems
, vol.83
, pp. 195-206
-
-
Salazar, C.1
Höfer, T.2
-
24
-
-
0002194865
-
Positive and Negative circuits in dynamical systems
-
Gouzé JL (1998) Positive and Negative circuits in dynamical systems. J Biol Systems 6: 11-15.
-
(1998)
J Biol Systems
, vol.6
, pp. 11-15
-
-
Gouzé, J.L.1
-
25
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla US, Iyengar R (1999) Emergent properties of networks of biological signaling pathways. Science 283: 381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
26
-
-
0034705227
-
Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties
-
Levchenko A, Bruck J, Sternberg PW (2000) Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proc Natl Acad Sci U S A 97: 5818-5823.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5818-5823
-
-
Levchenko, A.1
Bruck, J.2
Sternberg, P.W.3
-
27
-
-
0030445778
-
Tripping the switch fantastic: How a protein kinase cascade can convert graded inputs into switch-like outputs
-
Ferrell JE Jr (1996) Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs. Trends Biochem Sci 21: 460-466.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 460-466
-
-
Ferrell Jr, J.E.1
-
28
-
-
0036789922
-
Untangling the wires: A strategy to trace functional interactions in signaling and gene networks
-
Kholodenko BN, Kiyatkin A, Bruggeman FJ, Sontag E, Westerhoff HV, et al. (2002) Untangling the wires: a strategy to trace functional interactions in signaling and gene networks. Proc Natl Acad Sci U S A 99: 12841-12846.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12841-12846
-
-
Kholodenko, B.N.1
Kiyatkin, A.2
Bruggeman, F.J.3
Sontag, E.4
Westerhoff, H.V.5
-
29
-
-
0031559933
-
Quantification of information transfer via cellular signal transduction pathways
-
Kholodenko BN, Hoek JB, Westerhoff HV, Brown GC (1997) Quantification of information transfer via cellular signal transduction pathways. FEBS Lett 414: 430-434.
-
(1997)
FEBS Lett
, vol.414
, pp. 430-434
-
-
Kholodenko, B.N.1
Hoek, J.B.2
Westerhoff, H.V.3
Brown, G.C.4
-
30
-
-
33847355217
-
Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate
-
Santos SD, Verveer PJ, Bastiaens PI (2007) Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nat Cell Biol 9: 324-330.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 324-330
-
-
Santos, S.D.1
Verveer, P.J.2
Bastiaens, P.I.3
-
31
-
-
33847392514
-
Untangling the signalling wires
-
Kholodenko BN (2007) Untangling the signalling wires. Nat Cell Biol 9: 247-249.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 247-249
-
-
Kholodenko, B.N.1
-
32
-
-
0035926434
-
A model for a network of phosphorylation+dephosphorylation cycles displaying the dynamics of dominoes and clocks
-
Gonze D, Goldbeter A (2000) A model for a network of phosphorylation+dephosphorylation cycles displaying the dynamics of dominoes and clocks. J Theor Biol 210: 167-186.
-
(2000)
J Theor Biol
, vol.210
, pp. 167-186
-
-
Gonze, D.1
Goldbeter, A.2
-
33
-
-
0024425274
-
Dominoes and clocks: The union of two views of the cell cycle
-
Murray AW, Kirshner MW (1989) Dominoes and clocks: the union of two views of the cell cycle. Science 246: 614-621.
-
(1989)
Science
, vol.246
, pp. 614-621
-
-
Murray, A.W.1
Kirshner, M.W.2
-
34
-
-
0029681614
-
Extending the quasi-steady state approximation by changing variables
-
Borghans JA, De Boer RJ, Segel LA (1996) Extending the quasi-steady state approximation by changing variables. Bull Math Biol 58: 43-63.
-
(1996)
Bull Math Biol
, vol.58
, pp. 43-63
-
-
Borghans, J.A.1
De Boer, R.J.2
Segel, L.A.3
-
35
-
-
34047240610
-
Modeling networks of coupled enzymatic reactions using the total quasi-steatdy state approximation
-
Ciliberto A, Capuani F, Tyson JJ (2007) Modeling networks of coupled enzymatic reactions using the total quasi-steatdy state approximation. PloS Comput Biol 3: 463-472.
-
(2007)
PloS Comput Biol
, vol.3
, pp. 463-472
-
-
Ciliberto, A.1
Capuani, F.2
Tyson, J.J.3
-
37
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich NI, Hoek JB, Kholodenko BN (2004) Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J Cell Biol 164: 353-359.
-
(2004)
J Cell Biol
, vol.164
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
|