Evaluating expression and catalytic activity of anaerobic fungal fibrolytic enzymes native topiromyces sp E2 inSaccharomyces cerevisiae

Environmental Progress and Sustainable Energy

Volumn 31, Issue 1, 2012, Pages 37-46

  O'Malley, Michelle A ^a   Theodorou, Michael K ^b,c   Kaiser, Chris A ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b DURHAM UNIVERSITY   (United Kingdom)

^c CENTRE FOR PROCESS INNOVATION   (United Kingdom)

Author keywords

anaerobic fungi; biofuel; cellulase; consolidated bio processing; yeast

Indexed keywords

CDNA LIBRARIES; CELLULAR STRESS; CELLULASE; CELLULOLYTIC ENZYME; CEREVISIAE; CONSOLIDATED BIO-PROCESSING; DIGESTIVE TRACT; EXTRACELLULAR MEDIUM; EXTRACELLULAR SECRETION; FERMENTABLE SUGARS; ISOLATION AND CULTURE; LIGNOCELLULOSIC MATERIAL; LOW-MOLECULAR WEIGHT; MISFOLDING; NATIVE SYSTEM; PLANT MATERIAL; RECOMBINANT PROTEIN; S.CEREVISIAE; SECRETORY PATHWAYS; SEQUENCE PREDICTION;

BAST FIBERS; BIOFUELS; CATALYST ACTIVITY; CELLULOSE; CLONING; DIGESTIVE SYSTEM; PROTEINS; SUGARS; YEAST;

ENZYMES;

CATALYSTS; CELLULASE; CELLULOSE; ENZYMES; FIBERS; FUNGI; PHLOEM; PROTEINS; SUGARS; YEASTS;

EQUIDAE; EUKARYOTA; FUNGI; PIROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 84855873897     PISSN: 19447442     EISSN: 19447450     Source Type: Journal    
DOI: 10.1002/ep.10614     Document Type: Conference Paper

References (44)

1. Bayer, E.A., Lamed, R., White, B.A., &, Flint, H.J., (2008). From cellulosomes to cellulosomics. Chemical Record, 8, 364-377.
2. Dashtban, M., Schraft, H., &, Qin, W.S., (2009). Fungal bioconversion of lignocellulosic residues; opportunities & perspectives. International Journal of Biological Sciences, 5, 578-595.
3. Alper, H., &, Stephanopoulos, G., (2009). Engineering for biofuels: Exploiting innate microbial capacity or importing biosynthetic potential? Nature Reviews Microbiology, 7, 715-723.
4. Nielsen, D.R., Leonard, E., Yoon, S.H., Tseng, H.C., Yuan, C., &, Prather, K.L.J., (2009). Engineering alternative butanol production platforms in heterologous bacteria. Metabolic Engineering, 11, 262-273.
5. Lynd, L.R., van Zyl, W.H., McBride, J.E., &, Laser, M., (2005). Consolidated bioprocessing of cellulosic biomass: An update. Current Opinion in Biotechnology, 16, 577-583. (Pubitemid 41393839)
6. Lynd, L.R., Weimer, P.J., van Zyl, W.H., &, Pretorius, I.S., (2002). Microbial cellulose utilization: Fundamentals and biotechnology. Microbiology and Molecular Biology Reviews, 66, 506-577. (Pubitemid 35005827)
7. Perlack, R., Wright, L., Turhollow, A., Graham, R., Stokes, B., &, Erbach, D., (2005). Biomass as feedstock for a bioenergy and bioproducts industry: The technical feasibility of a billion-ton annual supply, US DOE AND USDA.
8. Kuyper, M., Harhangi, H.R., Stave, A.K., Winkler, A.A., Jetten, M.S.M., de Laat, W., den Ridder, J.J.J., Op den Camp, H.J.M., van Dijken, J.P., &, Pronk, J.T., (2003). High-level functional expression of a fungal xylose isomerase: The key to efficient ethanolic fermentation of xylose bySaccharomyces cerevisiae? FEMS Yeast Research, 4, 69-78. (Pubitemid 38367533)
9. Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J.K., Culley, D.E., Collett, J.R., Martin, J., Druzhinina, I.S., Mathis, H., Monot, F., Seiboth, B., Cherry, B., Rey, M., Berka, R., Kubicek, C.P., Baker, S.E., &, Margeot, A., (2009). Tracking the roots of cellulase hyperproduction by the fungusTrichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America, 106, 16151-16156.
10. van Zyl, W.H., Lynd, L.R., den Haan, R., &, McBride, J.E., (2007). Consolidated bioprocessing for bioethanol production usingSaccharomyces cereviside. Advances in Biochemical Engineering/Biotechnology, 108, 205-235. (Pubitemid 47434547)
11. Krause, D.O., Denman, S.E., Mackie, R.I., Morrison, M., Rae, A.L., Attwood, G.T., &, McSweeney, C.S., (2003). Opportunities to improve fiber degradation in the rumen: Microbiology, ecology, and genomics. FEMS Microbiology Reviews, 27, 663-693. (Pubitemid 37456863)
12. Doi, R.H., (2008). Cellulases of mesophilic microorganisms-Cellulosome and noncellulosome producers. Incredible Anaerobes: From Physiology to Genomics to Fuels, 1125, 267-279. (Pubitemid 351451148)
13. Hobson, P.N., &, Wallace, R.J., (1982). Microbial ecology and activities in the rumen. I. Critical Reviews in Microbiology, 9, 165-225.
14. Flint, H.J., Bayer, E.A., Rincon, M.T., Lamed, R., &, White, B.A., (2008). Polysaccharide utilization by gut bacteria: Potential for new insights from genomic analysis. Nature Reviews Microbiology, 6, 121-131.
15. Hess, M., Sczyrba, A., Egan, R., Kim, T.W., Chokhawala, H., Schroth, G., Luo, S.J., Clark, D.S., Chen, F., Zhang, T., Mackie, R.I., Pennacchio, L.A., Tringe, S.G., Visel, A., Woyke, T., Wang, Z., &, Rubin, E.M., (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science, 331, 463-467.
16. Den Haan, R., Rose, S.H., Lynd, L.R., &, van Zyl, W.H., (2007). Hydrolysis and fermentation of amorphous cellulose by recombinantSaccharomyces cerevisiae. Metabolic Engineering, 9, 87-94. (Pubitemid 44960875)
17. Den Haan, R., McBride, J.E., La Grange, D.C., Lynd, L.R., &, van Zyl, W.H., (2007). Functional expression of cellobiohydrolases inSaccharomyces cerevisiae towards one-step conversion of cellulose to ethanol. Enzyme and Microbial Technology, 40, 1291-1299. (Pubitemid 46356542)
18. VanFossen, A.L., Lewis, D.L., Nichols, J.D., &, Kelly, R.M., (2008). Polysaccharide degradation and synthesis by extremely nermophilic anaerobes. In, J. Wiegel, R.J. Maier, &, M.W.W. Adams, (Eds.), Incredible anaerobes: From physiology to genomics to fuels (pp. 322-337), Oxford: Blackwell Publishing. (Pubitemid 351451163)
19. Heinzelman, P., Snow, C.D., Smith, M.A., Yu, X.L., Kannan, A., Boulware, K., Villalobos, A., Govindarajan, S., Minshull, J., &, Arnold, F.H., (2009). SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stability. Journal of Biological Chemistry, 284, 26229-26233.
20. Keating, J.D., Panganiban, C., &, Mansfield, S.D., (2006). Tolerance and adaptation of ethanologenic yeasts to lignocellulosic inhibitory compounds. Biotechnology and Bioengineering, 93, 1196-1206.
21. Theodorou, M.K., Brookman, J., &, Trinci, A.P.J., (2005). Anaerobic fungi. In, H.P.S. Makkar, &, C.S. McSweeney, (Eds.), Methods in gut microbial ecology for ruminants, Dordrecht, The Netherlands: Springer.
22. Eberhardt, R.Y., Gilbert, H.J., &, Hazlewood, G.P., (2000). Primary sequence and enzymic properties of two modular endoglucanases, Cel5A and Cel45A, from the anaerobic fungusPiromyces equi. Microbiology-UK, 146, 1999-2008. (Pubitemid 30639275)
23. Hobson, P.N., &, Wallace, R.J., (1982). Microbial ecology and activities in the rumen. II. Critical Reviews in Microbiology, 9, 253-320.
24. Fanutti, C., Ponyi, T., Black, G.W., Hazlewood, G.P., &, Gilbert, H.J., (1995). The conserved noncatalytic 40-residue sequence in cellulases and hemicellulases from anaerobic fungi functions as a protein docking domain. Journal of Biological Chemistry, 270, 29314-29322.
25. Freelove, A.C.J., Bolam, D.N., White, P., Hazlewood, G.P., &, Gilbert, H.J., (2001). A novel carbohydrate-binding protein is a component of the plant cell wall-degrading complex ofPiromyces equi. Journal of Biological Chemistry, 276, 43010-43017.
26. Steenbakkers, P.J.M., Freelove, A., van Cranenbroek, B., Sweegers, B.M.C., Harhangi, H.R., Vogels, G.D., Hazlewood, G.P., Gilbert, H.J., &, den Camp, H., (2002). The major component of the cellulosomes of anaerobic fungi from the genus Piromyces is a family 48 glycoside hydrolase. DNA Sequence, 13, 313-320. (Pubitemid 36048842)
27. Nagy, T., Tunnicliffe, R.B., Higgins, L.D., Walters, C., Gilbert, H.J., &, Williamson, M.P., (2007). Characterization of a double dockerin from the cellulosome of the anaerobic fungusPiromyces equi. Journal of Molecular Biology, 373, 612-622. (Pubitemid 47488396)
28. Charnock, S.J., Bolam, D.N., Nurizzo, D., Szabo, L., McKie, V.A., Gilbert, H.J., &, Davies, G.J., (2002). Promiscuity in ligand-binding: The three-dimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello-and mannohexaose. Proceedings of the National Academy of Sciences of the United States of America, 99, 14077-14082. (Pubitemid 35257627)
29. Harhangi, H.R., Akhmanova, A.S., Emmens, R., van der Drift, C., de Laat, W., van Dijken, J.P., Jetten, M.S.M., Pronk, J.T., &, den Camp, H., (2003). Xylose metabolism in the anaerobic fungus Piromyces sp strain E2 follows the bacterial pathway. Archives of Microbiology, 180, 134-141. (Pubitemid 36963238)
30. Harhangi, H.R., Akhmanova, A., Steenbakkers, P.J.M., Jetten, M.S.M., van der Drift, C., &, den Camp, H., (2003). Genomic DNA analysis of genes encoding (hemi-)cellulolytic enzymes of anaerobic fungus Piromyces sp E2. Gene, 314, 73-80. (Pubitemid 37186920)
31. Harhangi, H.R., Steenbakkers, P.J.M., Akhmanova, A., Jetten, M.S.M., van der Drift, C., &, Op den Camp, H.J.M., (2002). A highly expressed family 1 beta-glucosidase with transglycosylation capacity from the anaerobic fungus Piromyces sp E2. Biochimica Et Biophysica Acta-Gene Structure and Expression, 1574, 293-303. (Pubitemid 34457903)
32. Steenbakkers, P.J.M., Irving, J.A., Harhangi, H.R., Swinkels, W.J.C., Akhmanva, A., Dijkermana, R., Jetten, M.S.M., Van der Drift, C., Whisstock, J.C., &, Den Camp, H., (2008). A serpin in the cellulosome of the anaerobic fungus Piromyces sp strain E2. Mycological Research, 112, 999-1006.
33. Parekh, R.N., Shaw, M.R., &, Wittrup, K.D., (1996). An integrating vector for tunable, high copy, stable integration into the dispersed Ty delta sites ofSaccharomyces cerevisiae. Biotechnology Progress, 12, 16-21.
34. O'Malley, M.A., Lazarova, T., Britton, Z.T., &, Robinson, A.S., (2007). High-level expression inSaccharomyces cerevisiae enables isolation and spectroscopic characterization of functional human adenosine A(2)a receptor. Journal of Structural Biology, 159, 166-178. (Pubitemid 47095402)
35. Gietz, R.D., &, Woods, R.A., (2002). Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. In Guide to yeast genetics and molecular and cell biology, Part B (pp. 87-96), San Diego: Academic Press. (Pubitemid 34619485)
36. Sidrauski, C., Cox, J.S., &, Walter, P., (1996). tRNA ligase is required for regulated mRNA splicing in the unfolded protein response. Cell, 87, 405-413. (Pubitemid 26374315)
37. Amberg, D.D., Burke, D.J., &, Strathern, J.N., (2005). Methods in yeast genetics: A Cold Spring Harbor Laboratory Course Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
38. O'Malley, M.A., Mancini, J.D., Young, C.L., McCusker, E.C., Raden, D., &, Robinson, A.S., (2009). Progress toward heterologous expression of active G-protein-coupled receptors inSaccharomyces cerevisiae: Linking cellular stress response with translocation and trafficking. Protein Science, 18, 2356-2370.
39. Lahjouji, K., Storms, R., Xiao, Z.Z., Joung, K.B., Zheng, Y., Powlowski, J., Tsang, A., &, Varin, L., (2007). Biochemical and molecular characterization of a cellobiohydrolase from Trametes versicolor. Applied Microbiology and Biotechnology, 75, 337-346. (Pubitemid 46866530)
40. Smith, J.D., &, Robinson, A.S., (2002). Overexpression of an archaeal protein in yeast: Secretion bottleneck at the ER. Biotechnology and Bioengineering, 79, 713-723. (Pubitemid 34982996)
41. Theodorou, M.K., Gill, M., Kingspooner, C., &, Beever, D.E., (1990). Enumeration of anaerobic chytridiomycetes as thallus-forming units-Novel method for quantification of fibrolytic fungal populations from the digestive-tract ecosystem. Applied and Environmental Microbiology, 56, 1073-1078. (Pubitemid 20114466)
42. Travers, K.J., Patil, C.K., Wodicka, L., Lockhart, D.J., Weissman, J.S., &, Walter, P., (2000). Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell, 101, 249-258.
43. Trinci, A.P.J., Davies, D.R., Gull, K., Lawrence, M.I., Nielsen, B.B., Rickers, A., &, Theodorou, M.K., (1994). Anaerobic fungi in herbivorous animals. Mycological Research, 98, 129-152. (Pubitemid 2021839)
44. Dijkerman, R., Bhansing, D.C.P., denCamp, H., vanderDrift, C., &, Vogels, G.D., (1997). Degradation of structural polysaccharides by the plant cell-wall degrading enzyme system from anaerobic fungi: An application study. Enzyme and Microbial Technology, 21, 130-136. (Pubitemid 27404009)