The major component of the cellulosomes of anaerobic fungi from the genus piromyces is a family 48 glycoside hydrolase

Mitochondrial DNA

Volumn 13, Issue 6, 2002, Pages 313-320

  Steenbakkers, P J M ^a   Freelove, A ^b   Van Cranenbroek, B ^a   Sweegers, B M C ^a   Harhangi, H R ^a   Vogels, G D ^a   Hazlewood, G P ^b   Gilbert, H J ^c   Op Den Camp, H J M ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b BABRAHAM INSTITUTE   (United Kingdom)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

Cellulase; Cellulosome; Convergent evolution; Dockerin domains; Glycoside hydrolase family 48; Piromyces

Indexed keywords

CATALYTIC DOMAIN; GLYCOSIDE HYDROLASES; PHYLOGENY; PIROMYCES; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); FUNGI; MYXOGASTRIA; PIROMYCES; PIROMYCES EQUI; PIROMYCES SP.;

EID: 12244311867     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/1042517021000024191     Document Type: Article

References (45)

1. Akhmanova, A., Voncken, F.G.J., Harhangi, H.R., Hosea, K.M., Vogels, G.D. and Hackstein, J.H.P. (1998) Cytosolic enzymes with a mitochondrial ancestry from the anaerobic chytrid Piromyces sp. E2, Mol. Microbiol. 30, 1017-1027. (Pubitemid 28550125)
2. Ali, B.R.S., Zhou, L.Q., Graves, F.M., Freedman, R.B., Black, G.W., Gilbert, H.J. and Hazlewood, G.P. (1995) Cellulases and hemicellulases of the anaerobic fungus Piromyces constitute a multiprotein cellulose-binding complex and are encoded by multigene families, FEMS Microbiol. Lett. 125, 15-21.
3. Barr, B.K., Hsieh, Y.-L., Ganem, B. and Wilson, D.B. (1996) Identification of two functionally different classes of exocellulases, Biochemistry 35, 586-592. (Pubitemid 26032711)
4. Bronnenmeier, K., Ruecknagel, K.P. and Staudenbauer,W.L. (1991) Purification and properties of a novel type of exo-1,4-betaglucanase (avicelase II) from the cellulolytic thermophile Clostridium stercorarium, Eur. J. Biochem. 200, 379-385.
5. Brownlee, A.G. (1994) The nucleic acids of anaerobic fungi, In: Mountford, D.O. and Orpin, C.G., eds, Anaerobic Fungi (Marcel Dekker, New York), pp. 241-256.
6. Chen, C.M., Gritzali, M. and Stafford, D.W. (1987) Nucleotide sequence and deduced primary structure of cellobiohydrolase II from Trichoderma reesei QM9414, Biotechnology 5, 274-278. (Pubitemid 17018234)
7. Covert, S.F., Bolduc, J. and Cullen, D. (1992) Genomic organization of a cellulase gene family in Phanerochaete chrysosporium, Curr. Genet. 22, 407-413.
8. Davies, G.J., Brzozowski, A.M., Dauter, M., Varrot, A. and Schulein, M. (2000) Structure and function of Humicola insolens family 6 cellulases: structure of the endoglucanase, Ce16B, at 1.6 A resolution, Biochem. J. 348, 201-207. (Pubitemid 30312149)
9. Dijkerman, R., Op den Camp, H.J.M., van der Drift, C. and Vogels, G.D. (1997) The role of the cellulolytic high molecular mass (HMM) complex of the anaerobic fungus Piromyces sp. strain E2 in the hydrolysis of microcrystalline cellulose, Arch. Microbiol. 167, 137-142. (Pubitemid 27141763)
10. Ding, S.-Y., Bayer, E.A., Steiner, D., Shoham, Y. and Lamed, R. (1999) A novel cellulosomal scaffoldin from Acetivibrio cellulolyticus that contains a family 9 glycosyl hydrolase, J. Bacteriol. 181, 6720-6729. (Pubitemid 29517987)
11. Eberhardt, R.Y., Gilbert, H.J. and Hazlewood, G.P. (2000) Primary sequence and enzymic properties of two modular endoglucanases, Ce15A and Ce145A, from the anaerobic fungus Piromyces equi, Microbiology 146, 1999-2008. (Pubitemid 30639275)
12. Fanutti, C., Black, G.W., Ponyi, T., Hazlewood, G.P. and Gilbert, H.J. (1995) The conserved noncatalytic 40-residue sequence in cellulases and hemicellulases from anaerobic fungi functions as a protein docking domain, J. Biol. Chem. 270, 29314-29322.
13. Fillingham, I.J., Kroon, P.A., Willamson, G., Gilbert, H.J. and Hazlewood, G.P. (1999) A modular cinnamoyl ester hydrolase from the anaerobic fungus Piromyces equi acts synergistically with xylanase and is part of a multiprotein cellulose-binding cellulase-hemicellulase complex, Biochem. J. 343, 215-224. (Pubitemid 29473898)
14. Gilbert, H.J., Hazlewood, G.P., Laurie, J.I., Orpin, C.G. and Xue, G.P. (1992) Homologous catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin, Mol. Microbiol. 6, 2065-2072.
15. von Heijne, G. (1983) Patterns of amino acids near signalsequence cleavage sites, Eur. J. Biochem. 133, 17-21.
16. Henrissat, B. and Bairoch, A. (1996) Updating the sequence-based classification of glycosyl hydrolases, Biochem. J. 316, 695-696. (Pubitemid 26182174)
17. Irwin, D.C., Zhang, S. and Wilson, D.B. (2000) Cloning, expression and characterization of a family 48 exocellulase, Cel48A, from Thermobifida fusca, Eur. J. Biochem. 267, 4988-4997. (Pubitemid 30641294)
18. Kakiuchi, M., Isui, A., Suzuki, K., Fujino, T., Fujino, E., Kimura, T., Karita, S., Sakka, K. and Ohmiya, K. (1998) Cloning and DNA sequencing of the genes encoding Clostridium josui scaffolding protein CipA and cellulase CelD and identification of their gene products as major components of the cellulosome, J. Bacteriol. 180, 4303-4308. (Pubitemid 28373540)
19. Kemp, P., Lander, D.J. and Orpin, C.G. (1984) The lipids of the rumen fungus Piromonas communis, J. Gen. Microbiol. 130, 27-37. (Pubitemid 14188279)
20. Kruus, K., Andreascchi, A., Wang, W.K. and Wu, J.H.D. (1995) Product inhibition of the recombinant CelS, and exoglucanase component of the Clostridium thermocellum cellulosome, Appl. Microbiol. Biotechnol. 44, 399-404. (Pubitemid 26024359)
21. Lee, S.S., Ha, J.K. and Cheng, K.-J. (2000) Relative contributions of bacteria, protozoa, and fungi to in vitro degradation of orchard grass cell walls and their interactions, Appl. Environ. Microbiol. 66, 3807-3813.
22. Li, B. and Renganathan, V. (1998) Gene cloning and characterization of a novel cellulose-binding beta-glucosidase from Phanerochaete chrysosporium, Appl. Environ. Microbiol. 64, 2748-2754. (Pubitemid 28303333)
23. Li, X.-L., Chen, H. and Ljungdahl, L.G. (1997) Monocentric and polycentric anaerobic fungi produce structurally related cellulases and xylanases, Appl. Environ. Microbiol. 63, 628-635. (Pubitemid 27121350)
24. Liu, C.-C. and Doi, R.H. (1998) Properties of exgS, a gene for a major subunit of the Clostridium cellulovorans cellulosome, Gene 211, 39-47. (Pubitemid 28200922)
25. Medve, J., Karlsson, J., Lee, D. and Tjerneld, F. (1998) Hydrolysis of microcrystalline cellulose by cellobiohydrolase I and endoglucanase II from Trichoderma reesei: adsorption, sugar production pattern, and synergism of the enzymes, Biotechnol. Bioeng. 59, 621-634. (Pubitemid 28350464)
26. Nielsen, H., Engelbrecht, J., Brunak, S. and von Heijne, G. (1997) A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites, Int. J. Neural. Syst. 8, 581-599.
27. Orpin, C.G. (1981) Isolation of cellulolytic phycomycete fungi from the caecum of the horse, J. Gen. Microbiol. 123, 287-296. (Pubitemid 11126697)
28. Parsiegla, G., Juy, M., Reverbel-Leroy, C., Tardif, C., Belach, J.-P., Driguez, H. and Haser, R. (1998) The crystal structure of the processive endocellulase CelF of Clostridium cellulolyticum in complex with a thiooligosaccharide inhibition at 2.0 A resolution, EMBO J. 17, 5551-5562. (Pubitemid 28445967)
29. Parsiegla, G., Reverbel-Leroy, C., Tardif, C., Beläch, J.-P., Driguez, H. and Haser, R. (2000) Crystal structures of the cellulase Cel48F in complex with inhibitors and substrates give insights into its processive action, Biochemistry 39, 11238-11246.
30. Raghothama, S., Eberhardt, R.Y., Simpson, P., Wigelsworth, D., White, P., Hazlewood, G.P., Nagy, T., Gilbert, H.J. and Williamson, M.P. (2001) Characterization of a cellulosome dockerin domain from the anaerobic fungus Piromyces equi, Nat. Struct. Biol. 8, 775-778. (Pubitemid 32803595)
31. Reverbel-Leroy, C., Pages, S., Beläch, A., Beläch, J.-P. and Tardif, C. (1997) The processive endocellulase CelF, a major component of the Clostridium cellulolyticum cellulosome: purification and characterization of the recombinant form, J. Bacteriol. 179, 46-52. (Pubitemid 26428464)
32. Riedel, K. and Bronnenmeier, K. (1998) Intramolecular synergism in an engineered exo-endo-1,4-beta-glucanase fusion protein, Mol. Mircobiol. 28, 767-775. (Pubitemid 28234386)
33. Rosewich, U.L. and Kistler, H.C. (2000) Role of horizontal gene transfer in the evolution of fungi, Annu. Rev. Phytopathol. 38, 325-363.
34. Sakon, J., Irwin, D., Wilson, D.B. and Karplus, P.A. (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca, Nat. Struct. Biol. 4, 810-818. (Pubitemid 27435346)
35. Saloheimo, M., Lehtovaara, P., Penttila, M., Teeri, T.T., Stahlberg, J., Johansson, G., Pettersson, G., Claeyssens, M., Tomme, P. and Knowles, J.K. (1988) EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme, Gene 63, 11-22.
36. Shoemaker, S., Schweickart, V., Ladner, M., Gelfand, D., Kwok, S., Myambo, K. and Innis, M. (1983) Molecular cloning of exo-cellobiohydrolase I derived from Trichoderma reesei strain L27, Biotechnology 1, 691-696. (Pubitemid 14247507)
37. Steenbakkers, P.J.M., Li, X.-L., Ximenes, E.A., Arts, J.G., Chen, H., Ljungdahl, L.G. and Op den Camp, H.J.M. (2001) Noncatalytic docking domains of cellulosomes of anaerobic fungi, J. Bacteriol. 183, 5325-5333. (Pubitemid 32802604)
38. Steenbakkers, P.J.M., Ubhayasekera, W., Goossen, H.J.A.M., van Lierop, E.M.H.M., van der Drift, C., Vogels, G.D., Mowbray, S.L. and Op den Camp, H.J.M. (2002) An intron-containing glycoside hydrolase family 9 cellulase gene encodes the dominant 90 kDa component of the cellulosome of the anaerobic fungs Piromyces sp. strain E2, Biochem. J, Accepted for publication.
39. Takashima, S., Nakamura, A., Masaki, H. and Uozumi, T. (1997) Cloning, sequencing, and expression of a thermostable cellulase gene of Humicola grisea, Biosci. Biotechnol. Biochem. 61, 245-250. (Pubitemid 27206793)
40. Takashima, S., Nakamura, A., Hidaka, M., Masaki, H. and Uozumi, T. (1999) Molecular cloning and expression of the novel fungal beta-glucosidase genes from Humicola grisea and Trichoderma reesei, J. Biochem. (Tokyo) 125, 728-736. (Pubitemid 29192494)
41. TeO, V.S., Saul, D.J. and Bergquist, P.L. (1995) celA, another gene coding for a multidomain cellulase from the extreme thermophile Caldocellum saccharolyticum, Appl. Microbiol. Biotechnol. 43, 291-296.
42. Teunissen, M.J., Op den Camp, H.J.M., Orpin, C.G., Huis in t Veld, J.H.J. and Vogels, G.D. (1991) Comparison of growth characteristics of anaerobic fungi isolated from ruminant and non-ruminant herbivores during cultivation in a defined medium, J. Gen. Microbiol. 137, 1401-1408.
43. Wang, W.K., Kruus, K. and Wu, J.H.D. (1993) Cloning and DNA sequence of the gene coding for Clostridium thermocellum cellulase Ss (CelS), a major cellulosome component, J. Bacteriol. 175, 1293-1302. (Pubitemid 23081804)
44. Zhou, L., Xue, G.-P., Orpin, C.G., Black, G.W., Gilbert, H.J. and Hazlewood, G.P. (1994) Intronless celB from the anaerobic fungus Neocallimastix patriciarum encodes a modular family A endoglucanase, Biochem. J. 297, 359-364. (Pubitemid 24026430)
45. Zverlov, V., Mahr, S., Riedel, K. and Bronnenmeier, K. (1998) Properties and gene structure of a bifunctional cellulolytic enzyme (CelA) from the extreme thermophile Anaerocellum thermophilum with separate glycosyl hydrolase family 9 and 48 catalytic domains, Microbiology 144, 457-465. (Pubitemid 28067751)