메뉴 건너뛰기




Volumn 287, Issue 3, 2012, Pages 2119-2129

Structural and kinetic evidence that catalytic reaction of human UPD-glucose 6-dehydrogenase involves covalent thiohemiacetal and thioester enzyme intermediates

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL OXIDATION; CATALYTIC BASE; CATALYTIC CYCLES; CATALYTIC MECHANISMS; CATALYTIC NUCLEOPHILES; CATALYTIC REACTIONS; ENZYMATIC MECHANISMS; GENERAL BASE; HYDRIDE TRANSFERS; KINETIC EVIDENCE; OXYANIONS; PRIMARY ALCOHOLS; RATE LIMITING; STEADY STATE; THIOESTERS; UDP-GLUCOSE; UDP-GLUCURONIC ACID;

EID: 84855857694     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.313015     Document Type: Article
Times cited : (27)

References (34)
  • 1
  • 2
    • 0034128936 scopus 로고    scopus 로고
    • Human UDP-glucuronosyltransferases: Metabolism, expression, and disease
    • DOI 10.1146/annurev.pharmtox.40.1.581
    • Tukey, R. H., and Strassburg, C. P. (2000) Human UDP- glucuronosyltransferases. Metabolism, expression, and disease. Annu. Rev. Pharmacol. Toxicol. 40, 581-616 (Pubitemid 30340694)
    • (2000) Annual Review of Pharmacology and Toxicology , vol.40 , pp. 581-616
    • Tukey, R.H.1    Strassburg, C.P.2
  • 3
    • 0034643813 scopus 로고    scopus 로고
    • The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation
    • DOI 10.1021/bi000181h
    • Campbell, R. E., Mosimann, S. C., van De Rijn, I., Tanner, M. E., and Strynadka, N. C. (2000) The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the 2-fold oxidation. Biochemistry 39, 7012-7023 (Pubitemid 30390395)
    • (2000) Biochemistry , vol.39 , Issue.23 , pp. 7012-7023
    • Campbell, R.E.1    Mosimann, S.C.2    Van De, R.I.3    Tanner, M.E.4    Strynadka, N.C.J.5
  • 5
    • 79959484741 scopus 로고    scopus 로고
    • Role of packing defects in the evolution of allostery and induced fit in human UDP-glucose dehydrogenase
    • Kadirvelraj, R., Sennett, N. C., Polizzi, S. J., Weitzel, S., and Wood, Z. A. (2011) Role of packing defects in the evolution of allostery and induced fit in human UDP-glucose dehydrogenase. Biochemistry 50, 5780-5789
    • (2011) Biochemistry , vol.50 , pp. 5780-5789
    • Kadirvelraj, R.1    Sennett, N.C.2    Polizzi, S.J.3    Weitzel, S.4    Wood, Z.A.5
  • 6
    • 79960903507 scopus 로고    scopus 로고
    • Conformational change upon product binding to Klebsiella pneumoniae UDP-glucose dehydrogenase.Apossible inhibition mechanism for the key enzyme in polymyxin resistance
    • Chen, Y. Y., Ko, T. P., Lin, C. H., Chen, W. H., and Wang, A. H. (2011) Conformational change upon product binding to Klebsiella pneumoniae UDP-glucose dehydrogenase.Apossible inhibition mechanism for the key enzyme in polymyxin resistance. J. Struct. Biol. 175, 300-310
    • (2011) J. Struct. Biol. , vol.175 , pp. 300-310
    • Chen, Y.Y.1    Ko, T.P.2    Lin, C.H.3    Chen, W.H.4    Wang, A.H.5
  • 9
    • 0017347240 scopus 로고
    • Udpglucose dehydrogenase. Kinetics and their mechanistic implications
    • Ordman, A. B., and Kirkwood, S. (1977) UDP-glucose dehydrogenase. Kinetics and their mechanistic implications. Biochim. Biophys. Acta 481, 25-32 (Pubitemid 8051791)
    • (1977) Biochimica et Biophysica Acta , vol.481 , Issue.1 , pp. 25-32
    • Ordman, A.B.1    Kirkwood, S.2
  • 10
    • 0017344768 scopus 로고
    • Mechanism of action of uridine diphosphoglucose dehydrogenase. Evidence for an essential lysine residue at the active site
    • Ordman, A. B., and Kirkwood, S. (1977) Mechanism of action of uridine diphoglucose dehydrogenase. Evidence for an essential lysine residue at the active site. J. Biol. Chem. 252, 1320-1326 (Pubitemid 8047892)
    • (1977) Journal of Biological Chemistry , vol.252 , Issue.4 , pp. 1320-1326
    • Ordman, A.B.1    Kirkwood, S.2
  • 11
    • 0016719206 scopus 로고
    • Mechanism of action of uridine diphosphoglucose dehydrogenase
    • Evidence for a second reversible dehydrogenation step involving an essential thiol group
    • Ridley, W. P., Houchins, J. P., and Kirkwood (1975) Mechanism of action of uridine diphosphoglucose dehydrogenase. Evidence for a second reversible dehydrogenation step involving an essential thiol group. J. Biol. Chem. 250, 8761-8767
    • (1975) J. Biol. Chem. , vol.250 , pp. 8761-8767
    • Ridley, W.P.1    Houchins, J.P.A.K.2
  • 12
    • 0015804182 scopus 로고
    • The stereospecificity of hydrogen abstraction by uridine diphosphoglucose dehydrogenase
    • Ridley, W. P., and Kirkwood (1973) The stereospecificity of hydrogen abstraction by uridine diphosphoglucose dehydrogenase. Biochem. Biophys. Res. Commun. 54, 955-960
    • (1973) Biochem. Biophys. Res. Commun. , vol.54 , pp. 955-960
    • Ridley, W.P.1    Kirkwood2
  • 13
    • 0015298942 scopus 로고
    • Studies on the mechanism of action of UDP-D-glucose dehydrogenase from beef liver
    • Schiller, J. G., Bowser, A. M., and Feingold, D. S. (1972) Studies on the mechanism of action of UDP-D-glucose dehydrogenase from beef liver. Carbohydr. Res. 21, 249-253
    • (1972) Carbohydr. Res. , vol.21 , pp. 249-253
    • Schiller, J.G.1    Bowser, A.M.2    Feingold, D.S.3
  • 15
    • 0017040764 scopus 로고
    • Half of the sites reactivity of bovine liver uridine diphosphoglucose dehydrogenase toward iodoacetate and iodoacetamide
    • DOI 10.1021/bi00670a036
    • Franzen, J. S., Ishman, R., and Feingold, D. S. (1976) Half-of-the-sites reactivity of bovine liver uridine diphosphoglucose dehydrogenase toward iodoacetate and iodoacetamide. Biochemistry 15, 5665-5671 (Pubitemid 8004284)
    • (1976) Biochemistry , vol.15 , Issue.25 , pp. 5665-5671
    • Franzen, J.S.1    Ishman, R.2    Feingold, D.S.3
  • 16
    • 0018801564 scopus 로고
    • Mechanisms of action of histidinol dehydrogenase and UDP-Glc dehydrogenase. Evidence that the half-reactions proceed on separate subunits
    • Eccleston, E.D., Thayer, M.L., and Kirkwood, S. (1979) Mechanisms of action of histidinol dehydrogenase and UDP-Glc dehydrogenase. Evidence that the half-reactions proceed on separate subunits. J. Biol. Chem. 254, 11399-11404
    • (1979) J. Biol. Chem. , vol.254 , pp. 11399-11404
    • Eccleston, E.D.1    Thayer, M.L.2    Kirkwood, S.3
  • 17
    • 0032496929 scopus 로고    scopus 로고
    • Covalent adduct formation with a mutated enzyme: Evidence for a thioester intermediate in the reaction catalyzed by UDP-glucose dehydrogenase
    • DOI 10.1021/ja9805977
    • Ge, X., Campbell, R. E., van de Rijn, I., and Tanner, M. E. (1998) Covalent adduct formation with a mutated enzyme: evidence for a thioester intermediate in the reaction catalyzed by UDP-glucose dehydrogenase. J. Am. Chem. Soc. 120, 6613-6614 (Pubitemid 28345232)
    • (1998) Journal of the American Chemical Society , vol.120 , Issue.26 , pp. 6613-6614
    • Ge, X.1    Campbell, R.E.2    Van De, R.I.3    Tanner, M.E.4
  • 18
    • 0031013279 scopus 로고    scopus 로고
    • Properties and kinetic analysis of UDP-glucose dehydrogenase from group A streptococci. Irreversible inhibition by UDP-chloroacetol
    • Campbell, R. E., Sala, R. F., van de Rijn, I., and Tanner, M. E. (1997) Properties and kinetic analysis of UDP-glucose dehydrogenase from group A streptococci. Irreversible inhibition by UDP-chloroacetol. J. Biol. Chem. 272, 3416-3422
    • (1997) J. Biol. Chem. , vol.272 , pp. 3416-3422
    • Campbell, R.E.1    Sala, R.F.2    Van De Rijn, I.3    Tanner, M.E.4
  • 19
    • 1642580528 scopus 로고    scopus 로고
    • Active site residues and mechanism of UDP-glucose dehydrogenase
    • DOI 10.1046/j.1432-1033.2003.03876.x
    • Ge, X., Penney, L. C., van de Rijn, I., and Tanner, M. E. (2004) Active site residues and mechanism of UDP-glucose dehydrogenase. Eur. J. Biochem. 271, 14-22 (Pubitemid 38122161)
    • (2004) European Journal of Biochemistry , vol.271 , Issue.1 , pp. 14-22
    • Ge, X.1    Penney, L.C.2    Van De, R.I.3    Tanner, M.E.4
  • 20
    • 0033601371 scopus 로고    scopus 로고
    • UDP-Glucose analogues as inhibitors and mechanistic probes of UDP-glucose dehydrogenase
    • Campbell, R. E., and Tanner, M. E. (1999) UDP-Glucose analogues as inhibitors and mechanistic probes of UDP-glucose dehydrogenase. J. Org. Chem. 64, 9487-9492
    • (1999) J. Org. Chem. , vol.64 , pp. 9487-9492
    • Campbell, R.E.1    Tanner, M.E.2
  • 21
    • 33846198374 scopus 로고    scopus 로고
    • Characterization of human UDP-glucose dehydrogenase reveals critical catalytic roles for lysine 220 and aspartate 280
    • DOI 10.1021/bi061537d
    • Easley, K. E., Sommer, B. J., Boanca, G., Barycki, J. J., and Simpson, M. A. (2007) Characterization of human UDP-glucose dehydrogenase reveals critical catalytic roles for lysine 220 and aspartate 280. Biochemistry 46, 369-378 (Pubitemid 46105430)
    • (2007) Biochemistry , vol.46 , Issue.2 , pp. 369-378
    • Easley, K.E.1    Sommer, B.J.2    Boanca, G.3    Barycki, J.J.4    Simpson, M.A.5
  • 22
    • 2542479106 scopus 로고    scopus 로고
    • Characterization of human UDP-glucose dehydrogenase: CYS-276 is required for the second of two successive oxidations
    • DOI 10.1074/jbc.M401928200
    • Sommer, B. J., Barycki, J. J., and Simpson, M. A. (2004) Characterization of human UDP-glucose dehydrogenase. Cys-276 is required for the second of two successive oxidations. J. Biol. Chem. 279, 23590-23596 (Pubitemid 38685673)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.22 , pp. 23590-23596
    • Sommer, B.J.1    Barycki, J.J.2    Simpson, M.A.3
  • 23
    • 78650656657 scopus 로고    scopus 로고
    • Regulation of UDP-glucose dehydrogenase is sufficient to modulate hyaluronan production and release, control sulfated GAG synthesis, and promote chondrogenesis
    • Clarkin, C. E., Allen, S., Kuiper, N. J., Wheeler, B. T., Wheeler-Jones, C. P., and Pitsillides, A. A. (2011) Regulation of UDP-glucose dehydrogenase is sufficient to modulate hyaluronan production and release, control sulfated GAG synthesis, and promote chondrogenesis. J. Cell. Physiol. 226, 749-761
    • (2011) J. Cell. Physiol. , vol.226 , pp. 749-761
    • Clarkin, C.E.1    Allen, S.2    Kuiper, N.J.3    Wheeler, B.T.4    Wheeler-Jones, C.P.5    Pitsillides, A.A.6
  • 24
    • 79955540851 scopus 로고    scopus 로고
    • Reduced chondrogenic matrix accumulation by 4-methylumbelliferone reveals the potential for selective targeting of UDP-glucose dehydrogenase
    • Clarkin, C. E., Allen, S., Wheeler-Jones, C. P., Bastow, E. R., and Pitsillides, A. A. (2011) Reduced chondrogenic matrix accumulation by 4-methylumbelliferone reveals the potential for selective targeting of UDP-glucose dehydrogenase. Matrix Biol. 30, 163-168
    • (2011) Matrix Biol. , vol.30 , pp. 163-168
    • Clarkin, C.E.1    Allen, S.2    Wheeler-Jones, C.P.3    Bastow, E.R.4    Pitsillides, A.A.5
  • 25
    • 0028103275 scopus 로고
    • The CCP4 suite. Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite. Programs for protein crystallography. Acta Crystallogr. D 50, 760-763
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-763
  • 26
    • 0033212815 scopus 로고    scopus 로고
    • Integration of macromolecular diffraction data
    • Leslie, A. G. (1999) Integration of macromolecular diffraction data. Acta Crystallogr. D 55, 1696-1702
    • (1999) Acta Crystallogr. D , vol.55 , pp. 1696-1702
    • Leslie, A.G.1
  • 27
    • 33846426122 scopus 로고    scopus 로고
    • Solving structures of protein complexes by molecular replacement with Phaser
    • McCoy, A. J. (2007) Solving structures of protein complexes by molecular replacement with Phaser. Acta Crystallogr. D 63, 32-41
    • (2007) Acta Crystallogr. D , vol.63 , pp. 32-41
    • McCoy, A.J.1
  • 31
    • 0033516705 scopus 로고    scopus 로고
    • The packing density in proteins: Standard radii and volumes
    • DOI 10.1006/jmbi.1999.2829
    • Tsai, J., Taylor, R., Chothia, C., and Gerstein, M. (1999) The packing density in proteins. Standard radii and volumes. J. Mol. Biol. 290, 253-266 (Pubitemid 29308589)
    • (1999) Journal of Molecular Biology , vol.290 , Issue.1 , pp. 253-266
    • Tsai, J.1    Taylor, R.2    Chothia, C.3    Gerstein, M.4
  • 32
    • 33644750108 scopus 로고    scopus 로고
    • The first crystal structure of a thioacylenzyme intermediate in the ALDH family: New coenzyme conformation and relevance to catalysis
    • DOI 10.1021/bi0515117
    • D'Ambrosio, K., Pailot, A., Talfournier, F., Didierjean, C., Benedetti, E., Aubry, A., Branlant, G., and Corbier, C. (2006) The first crystal structure of a thioacylenzyme intermediate in the ALDH family. New coenzyme conformation and relevance to catalysis. Biochemistry 45, 2978-2986 (Pubitemid 43336533)
    • (2006) Biochemistry , vol.45 , Issue.9 , pp. 2978-2986
    • D'Ambrosio, K.1    Pailot, A.2    Talfournier, F.3    Didierjean, C.4    Benedetti, E.5    Aubry, A.6    Branlant, G.7    Corbier, C.8
  • 34
    • 79957572973 scopus 로고    scopus 로고
    • Crystallographic evidence for active-site dynamics in the hydrolytic aldehyde dehydrogenases. Implications for the deacylation step of the catalyzed reaction
    • Muñoz-Clares, R. A., González-Segura, L., and Díaz-Sánchez, A. G. (2011) Crystallographic evidence for active-site dynamics in the hydrolytic aldehyde dehydrogenases. Implications for the deacylation step of the catalyzed reaction. Chem.-Biol. Interact. 191, 137-146
    • (2011) Chem.-Biol. Interact. , vol.191 , pp. 137-146
    • Muñoz-Clares, R.A.1    González-Segura, L.2    Díaz- Sánchez, A.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.