Efficient biostimulation of native and introduced quorum-quenching Rhodococcus erythropolis populations is revealed by a combination of analytical chemistry, microbiology, and pyrosequencing

Applied and Environmental Microbiology

Volumn 78, Issue 2, 2012, Pages 481-492

  Cirou, Amélie ^a,b   Mondy, Samuel ^a   An, Shu ^c   Charrier, Amélie ^a   Sarrazin, Amélie ^a   Thoison, Odile ^a   Bow, Michael Du ^c   Faure, Denis ^a  

^a CNRS   (France)

^b CNPPT   (France)

^c UNIVERSITÉ PARIS SACLAY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL COMMUNITY; BIOSTIMULATION; INNOVATIVE APPROACHES; LACTONASE; MOLECULAR APPROACH; N-ACYLHOMOSERINE LACTONES; PLANT ROOTS; PLANT TISSUES; POTATO PLANTS; PYROSEQUENCING; QUANTITATIVE PCR; QUORUM-SENSING; RHODOCOCCUS ERYTHROPOLIS; ROOT COLONIZATION; SOIL BACTERIUM;

BACTERIA; BIOCONTROL; DEGRADATION; GENES; POLYMERASE CHAIN REACTION; SOILS; TISSUE;

CHEMICAL ANALYSIS;

GAMMA BUTYROLACTONE DERIVATIVE;

BACTERIUM; BIOACCUMULATION; BIOCHEMISTRY; BIOCONTROL AGENT; BIOLOGICAL CONTROL; DEGRADATION; HYDROPONICS; INTRODUCED SPECIES; MOLECULAR ANALYSIS; NATIVE SPECIES; PATHOGEN; POLYMERASE CHAIN REACTION; POTATO; RHIZOSPHERE; SIGNALING; SOIL MICROORGANISM;

ARTICLE; CHEMICAL ANALYSIS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; PHYSIOLOGY; PLANT ROOT; POTATO; QUORUM SENSING; RHIZOSPHERE; RHODOCOCCUS;

ACYL-BUTYROLACTONES; BACTERIOLOGICAL TECHNIQUES; CHEMISTRY TECHNIQUES, ANALYTICAL; PLANT ROOTS; QUORUM SENSING; RHIZOSPHERE; RHODOCOCCUS; SEQUENCE ANALYSIS, DNA; SOLANUM TUBEROSUM;

BACTERIA (MICROORGANISMS); PECTOBACTERIUM; RHODOCOCCUS ERYTHROPOLIS; SOLANUM TUBEROSUM;

EID: 84855722551     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06159-11     Document Type: Article

References (41)

1. Aoshima H, et al. 2007. Safety evaluation of a heavy oil-degrading bacterium, Rhodococcus erythropolis C2. J. Toxicol. Sci. 32:69-78.
2. Binladen J, et al. 2007. The use of coded PCR primers enables highthroughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One 2:e197.
3. Carlier A, et al. 2003. The Ti plasmid of Agrobacterium tumefaciens harbors an attM-paralogous gene, aiiB, also encoding N-acyl homoserine lactonase activity. Appl. Environ. Microbiol. 69:4989-4993.
4. Cha C, Gao P, Chen YC, Shaw PD, Farrand SK. 1998. Production of acyl-homoserine lactone quorum-sensing signals by gram-negative plantassociated bacteria. Mol. Plant Microbe. Interact. 11:1119-1129.
5. Chilton MD, et al. 1974. Agrobacterium tumefaciens DNA and PS8 bacteriophage DNA not detected in crown gall tumors. Proc. Natl. Acad. Sci. U. S. A. 71:3672-3676.
6. Cirou A, Diallo S, Kurt C, Latour X, Faure D. 2007. Growth promotion of quorum-quenching bacteria in the rhizosphere of Solanum tuberosum. Environ. Microbiol. 9:1511-1522.
7. Cirou A, et al. 2011. Gamma-caprolactone stimulates growth of quorumquenching Rhodococcus populations in a large-scale hydroponic system for culturing Solanum tuberosum. Res. Microbiol. 162:945-950. doi: 10.1016/j.resmic.2011.01.010.
8. d'Angelo-Picard C, et al. 2004. Dynamics of bacterial populations in the rhizosphere of tobacco plants producing-or not-the quorum sensing signals hexanoyl- and 3-oxo-hexanoyl-homoserine lactone. FEMS Microbiol. Ecol. 51:19-29.
9. d'Angelo-Picard C, Faure D, Penot I, Dessaux Y. 2005. Diversity of N-acylhomoserine lactone-producing anddegrading bacteria in soil and tobacco rhizosphere. Environ. Microbiol. 7:1796-1808.
10. de Carvalho CC, Wick LY, Heipieper HJ. 2009. Cell wall adaptations of planktonic and biofilm Rhodococcus erythropolis cells to growth on C5 to C16 n-alkane hydrocarbons. Appl. Microbiol. Biotechnol. 82:311-320.
11. Diallo S, et al. 2011. Mechanisms and recent advances in biological control mediated through the potato rhizosphere. FEMS Microbiol. Ecol. 75: 351-364.
12. Dong YH, et al. 2001. Quenching quorum-sensing-dependent bacterial infection by an N-acyl homoserine lactonase. Nature 14:813-817.
13. Dong YH, Zhang XF, Xu JL, Zhang LH. 2004. Insecticidal Bacillus thuringiensis silences Erwinia carotovora virulence by a new form of microbial antagonism, signal interference. Appl. Environ. Microbiol. 70: 954-960.
14. Faure D, Dessaux Y. 2007. Quorum sensing as a target for developing biocontrol strategies towards the plant pathogen Pectobacterium. European J. Plant Pathology 119:353-365.
15. Franco M, Peinado RA, Medina M, Moreno J. 2004. Off-vine grape drying effect on volatile compounds and aromatic series in must from Pedro Ximénez grape variety. J. Agric. Food Chem. 52:3905-3910.
16. Fray RG. 2002. Altering plant-microbe interaction through artificially manipulating bacterial quorum sensing. Ann. Bot. 89:245-253.
17. Fuqua WC, Winans SC, Greenber EP. 1994. Quorum sensing in bacteria: the LuxR/LuxI family of cell density-responsive transcriptional regulators. J. Bacteriol. 176:269-275.
18. Gray KM, Garey JR. 2001. The evolution of bacterial LuxI and LuxR quorum sensing regulators. Microbiology 147:2379-2387.
19. Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. 2008. Errorcorrecting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat. Methods 5:235-237.
20. Jafra S, et al. 2006. Detection and characterization of bacteria from the potato rhizosphere degrading N-acyl-homoserine lactone. Can. J. Microbiol. 52:1006-1015.
21. Leigh MB, et al. 2006. Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site. Appl. Env. Microbiol. 72:2331-2342.
22. Li GQ, et al. 2008. Improved biodesulfurization of hydrodesulfurized diesel oil using Rhodococcus erythropolis and Gordonia sp. Biotechnol. Lett. 30:1759-1764.
23. Liu H, et al. 2008. Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum. PLoS Pathog. 4:e1000093.
24. Manefield M, Welch M, Givskov M, Salmond GP, Kjelleberg S. 2001. Halogenated furanones from the red alga, Delisea pulchra, inhibit carbapenem antibiotic synthesis and exoenzyme virulence factor production in the phytopathogen Erwinia carotovora. FEMS Microbiol. Lett. 27: 131-138.
25. McClean KH, et al. 1997. Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143:3703-3711.
26. Molina L, et al. 2003. Degradation of pathogen quorum-sensing molecules by soil bacteria: a preventive and curative biological control mechanism. FEMS Microbiol. Ecol. 45:71-81.
27. Palmer AG, Streng E, Blackwell HE. 2011.Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts. ACS Chem. Biol. [Epub ahead of print] doi:10.1021/cb200298g.
28. Park SY, et al. 2006. N-acylhomoserine lactonase producing Rhodococcus spp. with different AHL-degrading activities. FEMS Microbiol. Lett. 261: 102-108.
29. Pirhonen M, Flego D, Heikinheimo R, Palva ET. 1993. A small diffusible signal molecule is responsible for the global control of virulence and exoenzyme production in the plant pathogen Erwinia carotovora.EMBOJ. 12:2467-2476.
30. Rappert S, et al. 2007. Degradation of 2,5-dimethylpyrazine by Rhodococcus erythropolis strain DP-45 isolated from a waste gas treatment plant of a fishmeal processing company. Biodegradation 18:585-596.
31. Smadja B, et al. 2004. Involvement of N-acylhomoserine lactones throughout plant infection by Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum). Mol. Plant Microbe Interact. 17: 1269-1278.
32. Uroz S, et al. 2003. Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria. Microbiology 149:1981-1989.
33. Uroz S, et al. 2005. N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities. Microbiology 151: 3313-3322.
34. Uroz S, et al. 2008. A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases. Appl. Environ. Microbiol. 74:1357-1366.
35. Vancov T, Jury K, Van Zwieten L. 2005. Atrazine degradation by encapsulated Rhodococcus erythropolis NI86/21. J. Appl. Microbiol. 99: 767-775.
36. Vancov T, Jury K, Rice N, Van Zwieten LL, Morris S. 2007. Enhancing cell survival of atrazine degrading Rhodococcus erythropolis NI86/21 cells encapsulated in alginate beads. J. Appl. Microbiol. 102:212-220.
37. Vesely M, Knoppová M, Nesvera J, Pátek M. 2007. Analysis of catRABC operon for catechol degradation from phenol-degrading Rhodococcus erythropolis. Appl. Microbiol. Biotechnol. 76:159-168.
38. Whitehead NA, Barnard AM, Slater H, Simpson NJ, Salmond GPC. 2001. Quorum-sensing in Gram-negative bacteria. FEMS Microbiol. Rev. 25:365-404.
39. Yang YH, et al. 2006. High-throughput detection method of quorumsensing molecules by colorimetry and its applications. Anal. Biochem. 356:297-299.
40. Zhang LH. 2003. Quorum quenching and proactive host defense. Trends Plant Sci. 8:238-244.
41. Zhang B, et al. 2010. Expression of genes associated with aroma formation derived from the fatty acid pathway during peach fruit ripening. J. Agric. Food Chem. 58:6157-6165.