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Volumn 7, Issue 1, 2012, Pages 65-72

Application of microarray technology in Drosophila ethanol behavioral research

Author keywords

addiction; behavior; Drosophila; ethanol; gene expression; microarray

Indexed keywords

DROSOPHILA MELANOGASTER; INVERTEBRATA;

EID: 84855524854     PISSN: 16747984     EISSN: 16747992     Source Type: Journal    
DOI: 10.1007/s11515-011-1177-8     Document Type: Review
Times cited : (2)

References (53)
  • 1
    • 3242688534 scopus 로고    scopus 로고
    • Affymetrix,Affymetrix, Santa Clara, CA, version 5. 0 edition
    • Affymetrix (2001a) Affymetrix Microarray Suite Users Guide, Affymetrix, Santa Clara, CA, version 5. 0 edition.
    • (2001) Affymetrix Microarray Suite Users Guide
  • 2
    • 0038758551 scopus 로고    scopus 로고
    • Affymetrix, Affymetrix, Santa Clara, CA: Technical report
    • Affymetrix (2001b) Statistical Algorithms Reference Guide. Technical report, Affymetrix, Santa Clara, CA.
    • (2001) Statistical Algorithms Reference Guide
  • 3
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    • Al-Shahrour F, Díaz-Uriarte R, Dopazo J (2004). FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics, 20(4): 578-580.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 578-580
    • Al-Shahrour, F.1    Díaz-Uriarte, R.2    Dopazo, J.3
  • 4
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: from disarray to consolidation and consensus
    • Allison D B, Cui X, Page G P, Sabripour M (2006). Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet, 7(1): 55-65.
    • (2006) Nat Rev Genet , vol.7 , Issue.1 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3    Sabripour, M.4
  • 6
    • 80052499389 scopus 로고    scopus 로고
    • Genetic approaches to alcohol addiction: gene expression studies and recent candidates from Drosophila
    • Awofala A A (2011b). Genetic approaches to alcohol addiction: gene expression studies and recent candidates from Drosophila. Invert Neurosci, 11(1): 1-7.
    • (2011) Invert Neurosci , vol.11 , Issue.1 , pp. 1-7
    • Awofala, A.A.1
  • 7
    • 84855547134 scopus 로고    scopus 로고
    • The heat shock protein 26 gene is required for ethanol tolerance in Drosophila
    • Awofala A A, Jones S, Davies J A (2011). The heat shock protein 26 gene is required for ethanol tolerance in Drosophila. J Exp Neurosci, 5: 31-44.
    • (2011) J Exp Neurosci , vol.5 , pp. 31-44
    • Awofala, A.A.1    Jones, S.2    Davies, J.A.3
  • 8
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to mMultiple testing
    • Benjamini Y, Hochberg Y (1995). Controlling the false discovery rate: A practical and powerful approach to mMultiple testing. J Roy Stat Soc B Met, 57: 289-300.
    • (1995) J Roy Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 9
    • 42549125450 scopus 로고    scopus 로고
    • Ethanol sensitivity and tolerance in long-term memory mutants of Drosophila melanogaster
    • Berger K H, Kong E C, Dubnau J, Tully T, Moore M S, Heberlein U (2008). Ethanol sensitivity and tolerance in long-term memory mutants of Drosophila melanogaster. Alcohol Clin Exp Res, 32(5): 895-908.
    • (2008) Alcohol Clin Exp Res , vol.32 , Issue.5 , pp. 895-908
    • Berger, K.H.1    Kong, E.C.2    Dubnau, J.3    Tully, T.4    Moore, M.S.5    Heberlein, U.6
  • 10
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B M, Irizarry R A, Astrand M, Speed T P (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19(2): 185-193.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 12
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui X, Churchill G A (2003). Statistical tests for differential expression in cDNA microarray experiments. Genome Biol, 4(4): 210.
    • (2003) Genome Biol , vol.4 , Issue.4 , pp. 210
    • Cui, X.1    Churchill, G.A.2
  • 14
    • 72449139682 scopus 로고    scopus 로고
    • Preferential ethanol consumption in Drosophila models features of addiction
    • Devineni A V, Heberlein U (2009). Preferential ethanol consumption in Drosophila models features of addiction. Curr Biol, 19(24): 2126-2132.
    • (2009) Curr Biol , vol.19 , Issue.24 , pp. 2126-2132
    • Devineni, A.V.1    Heberlein, U.2
  • 15
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: using gene ontology and GenMAPP to create a global gene-expression profile from microarray data
    • Doniger S W, Salomonis N, Dahlquist K D, Vranizan K, Lawlor S C, Conklin B R (2003). MAPPFinder: using gene ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol, 4(1): R7.
    • (2003) Genome Biol , vol.4 , Issue.1
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 16
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • Dudoit S, Shaffer J P, Block J C (2003). Multiple hypothesis testing in microarray experiments. Stat Sci, 18(1): 71-103.
    • (2003) Stat Sci , vol.18 , Issue.1 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Block, J.C.3
  • 17
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen M B, Brown P O (1999). DNA arrays for analysis of gene expression. Methods Enzymol, 303: 179-205.
    • (1999) Methods Enzymol , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 18
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen M B, Spellman P T, Brown P O, Botstein D (1998). Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA, 95(25): 14863-14868.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 19
    • 33646344978 scopus 로고    scopus 로고
    • STEM: a tool for the analysis of short time series gene expression data
    • Ernst J, Bar-Joseph Z (2006). STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics, 7(1): 191.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 191
    • Ernst, J.1    Bar-Joseph, Z.2
  • 27
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee M L, Kuo F C, Whitmore G A, Sklar J (2000). Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci USA, 97: 9834-9839.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 28
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • Li C, Wong W H (2001). Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA, 98(1): 31-36.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 29
    • 50649089207 scopus 로고    scopus 로고
    • RNAseq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni J C, Mason C E, Mane SM, Stephens M, Gilad Y (2008). RNAseq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res, 18(9): 1509-1517.
    • (2008) Genome Res , vol.18 , Issue.9 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 30
    • 33645651236 scopus 로고    scopus 로고
    • How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results
    • Millenaar F F, Okyere J, May S T, van Zanten M, Voesenek L A, Peeters A J (2006). How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. BMC Bioinformatics, 7(1): 137.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 137
    • Millenaar, F.F.1    Okyere, J.2    May, S.T.3    van Zanten, M.4    Voesenek, L.A.5    Peeters, A.J.6
  • 31
    • 0035144230 scopus 로고    scopus 로고
    • Interpretation, design, and analysis of gene array expression experiments
    • Miller R A, Galecki A, Shmookler-Reis R J (2001). Interpretation, design, and analysis of gene array expression experiments. J Gerontol A Biol Sci Med Sci, 56(2): B52-B57.
    • (2001) J Gerontol A Biol Sci Med Sci , vol.56 , Issue.2 , pp. 52-57
    • Miller, R.A.1    Galecki, A.2    Shmookler-Reis, R.J.3
  • 32
    • 0032511188 scopus 로고    scopus 로고
    • Ethanol intoxication in Drosophila: Genetic and pharmacological evidence for regulation by the cAMP signaling pathway
    • Moore M S, DeZazzo J, Luk A Y, Tully T, Singh C M, Heberlein U (1998). Ethanol intoxication in Drosophila: Genetic and pharmacological evidence for regulation by the cAMP signaling pathway. Cell, 93(6): 997-1007.
    • (1998) Cell , vol.93 , Issue.6 , pp. 997-1007
    • Moore, M.S.1    Dezazzo, J.2    Luk, A.Y.3    Tully, T.4    Singh, C.M.5    Heberlein, U.6
  • 33
    • 33750838273 scopus 로고    scopus 로고
    • Transcriptional response to alcohol exposure in Drosophila melanogaster
    • Morozova T V, Anholt R R, Mackay T F (2006). Transcriptional response to alcohol exposure in Drosophila melanogaster. Genome Biol, 7(10): R95.
    • (2006) Genome Biol , vol.7 , Issue.10
    • Morozova, T.V.1    Anholt, R.R.2    Mackay, T.F.3
  • 34
    • 42949142215 scopus 로고    scopus 로고
    • Phenotypic and transcriptional response to selection for alcohol sensitivity in Drosophila melanogaster
    • Morozova T V, Anholt R R, Mackay T F (2007). Phenotypic and transcriptional response to selection for alcohol sensitivity in Drosophila melanogaster. Genome Biol, 8(10): R231.
    • (2007) Genome Biol , vol.8 , Issue.10
    • Morozova, T.V.1    Anholt, R.R.2    Mackay, T.F.3
  • 35
    • 0036574916 scopus 로고    scopus 로고
    • Statistical issues with microarrays: processing and analysis
    • Nadon R, Shoemaker J (2002). Statistical issues with microarrays: processing and analysis. Trends Genet, 18(5): 265-271.
    • (2002) Trends Genet , vol.18 , Issue.5 , pp. 265-271
    • Nadon, R.1    Shoemaker, J.2
  • 36
    • 33745407776 scopus 로고    scopus 로고
    • The microarray data analysis process: from raw data to biological significance
    • Olson N E (2006). The microarray data analysis process: from raw data to biological significance. NeuroRx, 3(3): 373-383.
    • (2006) NeuroRx , vol.3 , Issue.3 , pp. 373-383
    • Olson, N.E.1
  • 38
    • 0037433040 scopus 로고    scopus 로고
    • Identifying differentially expressed genes using false discovery rate controlling procedures
    • Reiner A, Yekutieli D, Benjamini Y (2003). Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 19(3): 368-375.
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 368-375
    • Reiner, A.1    Yekutieli, D.2    Benjamini, Y.3
  • 39
    • 23844531242 scopus 로고    scopus 로고
    • The hangover gene defines a stress pathway required for ethanol tolerance development
    • Scholz H, Franz M, Heberlein U (2005). The hangover gene defines a stress pathway required for ethanol tolerance development. Nature, 436(7052): 845-847.
    • (2005) Nature , vol.436 , Issue.7052 , pp. 845-847
    • Scholz, H.1    Franz, M.2    Heberlein, U.3
  • 41
    • 0033840397 scopus 로고    scopus 로고
    • Genetic control of acute ethanolinduced behaviors in Drosophila
    • Singh C M, Heberlein U (2000). Genetic control of acute ethanolinduced behaviors in Drosophila. Alcohol Clin Exp Res, 24(8): 1127-1136.
    • (2000) Alcohol Clin Exp Res , vol.24 , Issue.8 , pp. 1127-1136
    • Singh, C.M.1    Heberlein, U.2
  • 42
    • 73649086608 scopus 로고    scopus 로고
    • Getting started in gene expression microarray analysis
    • Slonim D K, Yanai I (2009). Getting started in gene expression microarray analysis. PLOS Comput Biol, 5(10): e1000543.
    • (2009) PLOS Comput Biol , vol.5 , Issue.10
    • Slonim, D.K.1    Yanai, I.2
  • 44
    • 0035887459 scopus 로고    scopus 로고
    • Molecular classification of human carcinomas by use of gene expression signatures
    • Su A l, Welsh J B, Sapinoso L M, Kern S G, Dimitrov P, Lapp H (2001). Molecular classification of human carcinomas by use of gene expression signatures. Cancer Res, 61: 7388-93.
    • (2001) Cancer Res , vol.61 , pp. 7388-7393
    • Su, A.L.1    Welsh, J.B.2    Sapinoso, L.M.3    Kern, S.G.4    Dimitrov, P.5    Lapp, H.6
  • 45
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
    • Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander E S, Golub T R (1999). Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA, 96(6): 2907-2912.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6    Lander, E.S.7    Golub, T.R.8
  • 47
    • 33745291926 scopus 로고    scopus 로고
    • The effect of oligonucleotide microarray data preprocessing on the analysis of patient-cohort studies
    • Verhaak R G, Staal F J, Valk P J, Lowenberg B, Reinders M J, de Ridder D (2006). The effect of oligonucleotide microarray data preprocessing on the analysis of patient-cohort studies. BMC Bioinformatics, 7(1): 105.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 105
    • Verhaak, R.G.1    Staal, F.J.2    Valk, P.J.3    Lowenberg, B.4    Reinders, M.J.5    de Ridder, D.6
  • 48
    • 0035879273 scopus 로고    scopus 로고
    • The cAMP-protein kinase a signal transduction pathway modulates ethanol consumption and sedative effects of ethanol
    • Wand G, Levine M, Zweifel L, Schwindinger W, Abel T (2001). The cAMP-protein kinase a signal transduction pathway modulates ethanol consumption and sedative effects of ethanol. J Neurosci, 21: 5297-5303.
    • (2001) J Neurosci , vol.21 , pp. 5297-5303
    • Wand, G.1    Levine, M.2    Zweifel, L.3    Schwindinger, W.4    Abel, T.5
  • 49
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet, 10(1): 57-63.
    • (2009) Nat Rev Genet , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 50
    • 10844290766 scopus 로고    scopus 로고
    • A model-based background adjustment for oligonucleotide expression arrays
    • Wu Z, Irizarry A R, Gentleman R, Martinez-Murillo F, Spencer F (2004). A model-based background adjustment for oligonucleotide expression arrays. JASA, 99: 909-917.
    • (2004) Jasa , vol.99 , pp. 909-917
    • Wu, Z.1    Irizarry, A.R.2    Gentleman, R.3    Martinez-Murillo, F.4    Spencer, F.5
  • 51
    • 2542610720 scopus 로고    scopus 로고
    • Preprocessing of oligonucleotide array data
    • Wu Z, Irizarry R A (2004). Preprocessing of oligonucleotide array data. Nat Biotechnol, 22(6): 656-658, author reply 658.
    • (2004) Nat Biotechnol , vol.22 , Issue.6 , pp. 656-658
    • Wu, Z.1    Irizarry, R.A.2
  • 52
    • 0035937536 scopus 로고    scopus 로고
    • Increased levels of calcium-sensitive adenylyl cyclase subtypes in the limbic system of alcoholics: evidence for a specific role of cAMP signaling in the human addictive brain
    • Yamamoto M, Pohli S, Durany N, Ozawa H, Saito T, Boissl K W, Zöchling R, Riederer P, Böning J, Götz, ME (2001). Increased levels of calcium-sensitive adenylyl cyclase subtypes in the limbic system of alcoholics: evidence for a specific role of cAMP signaling in the human addictive brain. Brain Res, 895: 233-237.
    • (2001) Brain Res , vol.895 , pp. 233-237
    • Yamamoto, M.1    Pohli, S.2    Durany, N.3    Ozawa, H.4    Saito, T.5    Boissl, K.W.6    Zöchling, R.7    Riederer, P.8    Böning, J.9    Götz, M.E.10


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