-
1
-
-
0036425552
-
Role of cation-pi interactions to the stability of thermophilic proteins
-
Gromiha MM, Thomas S, and Santhosh C. Role of cation-pi interactions to the stability of thermophilic proteins. Prep. Biochem.Biotech.2002; 32: 355-362.
-
(2002)
Prep. Biochem.Biotech
, vol.32
, pp. 355-362
-
-
Gromiha, M.M.1
Thomas, S.2
Santhosh, C.3
-
2
-
-
0037172796
-
Elucidation of factors responsible for enhanced thermal stability of proteins: A structural genomics based study
-
Chakravarty S, Varadarajan R. Elucidation of factors responsible for enhanced thermal stability of proteins: A structural genomics based study.Biochemistry.2002; 41: 8152-8161.
-
(2002)
Biochemistry
, vol.41
, pp. 8152-8161
-
-
Chakravarty, S.1
Varadarajan, R.2
-
3
-
-
0037012361
-
Cation-pi interaction in model alpha-helical peptides
-
Shi Z, Olson CA, Kallenbach NR. Cation-pi interaction in model alpha-helical peptides. J. A., Chem. Soc.2002; 124: 3284-3291.
-
(2002)
J. A., Chem. Soc
, vol.124
, pp. 3284-3291
-
-
Shi, Z.1
Olson, C.A.2
Kallenbach, N.R.3
-
5
-
-
0034615779
-
Peptide insertions in domain 4 of hβc, the shared signaling receptor subunit for gm-csf, il3 and il5, induce ligand-independent activation
-
Mulhern TD, Lopez AF, Andrea'd RJ, Gaunt C, Vandeleur L, Vadas MA, Booker GW, Bagley CJ. Peptide insertions in domain 4 of hβc, the shared signaling receptor subunit for gm-csf, il3 and il5, induce ligand-independent activation. J. Mol. Biol, 2000; 297: 989-1001.
-
(2000)
J. Mol. Biol
, vol.297
, pp. 989-1001
-
-
Mulhern, T.D.1
Lopez, A.F.2
Andrea'd, R.J.3
Gaunt, C.4
Vandeleur, L.5
Vadas, M.A.6
Booker, G.W.7
Bagley, C.J.8
-
6
-
-
0037466090
-
Distinct roles of conventional non-covalent and cation-π interactions in protein stability
-
Gromiha MM. Distinct roles of conventional non-covalent and cation-π interactions in protein stability. Biophys. Chem. 2003; 103: 251-258.
-
(2003)
Biophys. Chem
, vol.103
, pp. 251-258
-
-
Gromiha, M.M.1
-
7
-
-
0028361540
-
Members of the immunoglobulin superfamily in bacteria
-
Harpaz Y, Chothia C, Members of the immunoglobulin superfamily in bacteria. J. Mol. Biol. 1994; 238 (4): 528-39.
-
(1994)
J. Mol. Biol
, vol.238
, Issue.4
, pp. 528-539
-
-
Harpaz, Y.1
Chothia, C.2
-
8
-
-
0042620298
-
Membrane proteins with immunoglobulin-like domains--a master super family of interaction molecules
-
Barclay A. Membrane proteins with immunoglobulin-like domains-a master super family of interaction molecules. Semin, Immunol. 2003; 15 (4): 215-23.
-
(2003)
Semin Immunol
, vol.15
, Issue.4
, pp. 215-223
-
-
Barclay, A.1
-
10
-
-
0025370815
-
Dominant forces in protein folding, Perspect
-
Dill KA. Dominant forces in protein folding, Perspect. Biochem. 1990; 29: 7133-7155.
-
(1990)
Biochem
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
11
-
-
0001704013
-
Aromatic Compounds as Donor Molecules in Hydrogen Bonding
-
Tamres M. Aromatic Compounds as Donor Molecules in Hydrogen Bonding. Journal of the American Chemical Society. 1952; 74: 3375-3378.
-
(1952)
Journal of the American Chemical Society
, vol.74
, pp. 3375-3378
-
-
Tamres, M.1
-
12
-
-
0001318730
-
Nuclear magnetic resonance measurements of complexes of chloroform with aromatic molecules and olefins
-
Reeves LW, Schneider WG. Nuclear magnetic resonance measurements of complexes of chloroform with aromatic molecules and olefins. Canadian Journal of Chemistry. 1957; 35: 251-261.
-
(1957)
Canadian Journal of Chemistry
, vol.35
, pp. 251-261
-
-
Reeves, L.W.1
Schneider, W.G.2
-
13
-
-
0003505803
-
-
(Eds.), Wiley-VCH, New York
-
Nishio M, Hirota M, Umezawa Y. (Eds.). The CH/π Interaction, Wiley-VCH, New York, 1998.
-
(1998)
The CH/π Interaction
-
-
Nishio, M.1
Hirota, M.2
Umezawa, Y.3
-
14
-
-
0034681421
-
The molecular structure of hyperthermostable aromatic amino transferase with novel substrate specificity from Pyrococcus horikoshii
-
Matsui I, Matsui E, Sakai Y, Kikuchi H, Kawarabayasi Y, Ura H, Kawaguchi S, Kuramitsu S, Harata K. The molecular structure of hyperthermostable aromatic amino transferase with novel substrate specificity from Pyrococcus horikoshii. The Journal of Biological Chemistry. 2000; 275: 4871-4879
-
(2000)
The Journal of Biological Chemistry
, vol.275
, pp. 4871-4879
-
-
Matsui, I.1
Matsui, E.2
Sakai, Y.3
Kikuchi, H.4
Kawarabayasi, Y.5
Ura, H.6
Kawaguchi, S.7
Kuramitsu, S.8
Harata, K.9
-
15
-
-
0029151201
-
CH/π interaction in the packing of the adenine ring in protein structures
-
Chakrabarti P, Samanta U. CH/π interaction in the packing of the adenine ring in protein structures. Journal of Molecular Biology. 1995; 251: 9-14.
-
(1995)
Journal of Molecular Biology
, vol.251
, pp. 9-14
-
-
Chakrabarti, P.1
Samanta, U.2
-
16
-
-
0032054015
-
CH/π interactions as demonstrated in the crystal structure of guanine nucleotide binding proteins, Src homology-2 domains and human growth hormone in complex with their specific ligands
-
Umezawa Y, Nishio M. CH/π interactions as demonstrated in the crystal structure of guanine nucleotide binding proteins, Src homology-2 domains and human growth hormone in complex with their specific ligands. Bioorganic & Medicinal Chemistry. 1986; 493-504.
-
(1986)
Bioorganic & Medicinal Chemistry
, pp. 493-504
-
-
Umezawa, Y.1
Nishio, M.2
-
17
-
-
0034681104
-
Protein-carbohydrate interactions in human lysozyme probed by combining sitedirected mutagenesis and affinity labeling
-
Muraki M, Harata K, Sugita N, Sato K I. Protein-carbohydrate interactions in human lysozyme probed by combining sitedirected mutagenesis and affinity labeling. Biochemistry. 2000; 39: 292-299.
-
(2000)
Biochemistry
, vol.39
, pp. 292-299
-
-
Muraki, M.1
Harata, K.2
Sugita, N.3
Sato, K.I.4
-
18
-
-
0033548058
-
CH/π interactions in the crystal structure of class I MHC antigens and their complexes with peptides
-
Jabs A, Weiss MS, Hilgenfeld R. CH/π interactions in the crystal structure of class I MHC antigens and their complexes with peptides. Journal of Molecular Biology. 1999; 286: 291-304.
-
(1999)
Journal of Molecular Biology
, vol.286
, pp. 291-304
-
-
Jabs, A.1
Weiss, M.S.2
Hilgenfeld, R.3
-
19
-
-
33748962203
-
Chymotrypsin Inhibitory conformation induced by amino acid side-chain-side-chain intermolecular CH/π Interaction
-
Shimohigashi Y, Maeda I, Nose T, Ikesue K, Sakamoto H, Ogawa Y. et al. Chymotrypsin Inhibitory conformation induced by amino acid side-chain-side-chain intermolecular CH/π Interaction. Journal of the Chemical Society. 1996; 1: 2479-2485.
-
(1996)
Journal of the Chemical Society
, vol.1
, pp. 2479-2485
-
-
Shimohigashi, Y.1
Maeda, I.2
Nose, T.3
Ikesue, K.4
Sakamoto, H.5
Ogawa, Y.6
-
20
-
-
0033057870
-
Design of serine protease inhibitors with conformation restricted by amino acid side-chain side-chain CH/π interaction
-
Shimohigashi Y, Nose T, Yamauchi Y, Maeda I. Design of serine protease inhibitors with conformation restricted by amino acid side-chain side-chain CH/π interaction. Biopolymers. 1999; 51: 9-17.
-
(1999)
Biopolymers
, vol.51
, pp. 9-17
-
-
Shimohigashi, Y.1
Nose, T.2
Yamauchi, Y.3
Maeda, I.4
-
22
-
-
0035910278
-
Hydrogen bonds with π-acceptors in proteins frequencies and role in stabilizing local 3D structures
-
Steiner T, Koellner GJ. Hydrogen bonds with π-acceptors in proteins frequencies and role in stabilizing local 3D structures. Journal of Molecular Biology. 2001; 305: 535-557.
-
(2001)
Journal of Molecular Biology
, vol.305
, pp. 535-557
-
-
Steiner, T.1
Koellner, G.J.2
-
24
-
-
77955539390
-
Nature of cation-π interactions and its role in structural stability in Immunoglobulin proteins
-
1-1
-
Tayubi IA, Sethumadhavan R. Nature of cation-π interactions and its role in structural stability in Immunoglobulin proteins. Biochemistry. Moscow. 2010; 75 (7): 1-1.
-
(2010)
Biochemistry. Moscow
, vol.75
, Issue.7
-
-
Tayubi, I.A.1
Sethumadhavan, R.2
-
26
-
-
41849148228
-
HBAT: A complete package for analyzing strong and weak hydrogen bonds in macromolecular crystal structures
-
Tiwari A, Panigrahi SK. HBAT: A complete package for analyzing strong and weak hydrogen bonds in macromolecular crystal structures. In Silico Biology. 2007; 7: 0057.
-
(2007)
In Silico Biology
, vol.7
, pp. 0057
-
-
Tiwari, A.1
Panigrahi, S.K.2
-
27
-
-
0042622395
-
NCI: A server to identify non-canonical interactions in protein Structures
-
Babu MM. NCI: a server to identify non-canonical interactions in protein Structures. Nucleic Acids Res. 2003; 31(13):3345-8.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3345-3348
-
-
Babu, M.M.1
-
28
-
-
2942522721
-
ASA View. Database and tool for solvent accessibility representation in proteins
-
Ahmad S, Gromiha MM, Fawareh H, Sarai A. ASA View. Database and tool for solvent accessibility representation in proteins. BMC Bioinformatics. 2004; 5: 51
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 51
-
-
Ahmad, S.1
Gromiha, M.M.2
Fawareh, H.3
Sarai, A.4
-
29
-
-
0029873155
-
Stability changes upon mutation of solvent accessible residues in proteins evaluated by database-derived potentials
-
Gilis D, Rooman M. Stability changes upon mutation of solvent accessible residues in proteins evaluated by database-derived potentials. Journal of Molecular Biology. 1996; 257: 1112-1126.
-
(1996)
Journal of Molecular Biology
, vol.257
, pp. 1112-1126
-
-
Gilis, D.1
Rooman, M.2
-
30
-
-
0030777760
-
Predicting protein stability changes upon mutation using database derived potentials: Solvent accessibility determines the importance of local versus non local interactions along the sequence
-
Gilis D, Rooman M. Predicting protein stability changes upon mutation using database derived potentials: solvent accessibility determines the importance of local versus non local interactions along the sequence. Journal of Molecular Biology. 1997; 272: 276-290.
-
(1997)
Journal of Molecular Biology
, vol.272
, pp. 276-290
-
-
Gilis, D.1
Rooman, M.2
-
31
-
-
0001614001
-
Influence of medium and long range interactions in different structural classes of globular proteins
-
151162
-
Gromiha MM Selvaraj S. Influence of medium and long range interactions in different structural classes of globular proteins. Journal of Biological Physics. 1997; 23:151162.
-
(1997)
Journal of Biological Physics
, pp. 23
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
33
-
-
0037340960
-
Role of hydrophobic clusters and long range contact networks in the folding of (alpha/beta) 8 barrel proteins
-
Selvaraj S, Gromiha MM. Role of hydrophobic clusters and long range contact networks in the folding of (alpha/beta) 8 barrel proteins. Biophysical Journal. 2003; 84:1919-1925.
-
(2003)
Biophysical Journal
, vol.84
, pp. 1919-1925
-
-
Selvaraj, S.1
Gromiha, M.M.2
-
34
-
-
1842464687
-
Inter-residue interactions in protein folding and stability. 35. Progress
-
Gromiha MM, Selvaraj S. Inter-residue interactions in protein folding and stability. 35. Progress. Biophysics and Molecular Biology. 2004; 86: 235-277.
-
(2004)
Biophysics and Molecular Biology
, vol.86
, pp. 235-277
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
37
-
-
2542445427
-
Consurf. Identification of functional regions in proteins by surface mapping of phylogenetic information
-
Glaser F, Pupko T, Paz I, Bell RE, Bechor D, Martz E, et al. Consurf. Identification of functional regions in proteins by surface mapping of phylogenetic information. Bioinformatics. 2003; 19: 163-164.
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor, D.5
Martz, E.6
-
38
-
-
0037255072
-
The Swiss prot protein knowledge base and its supplement TrEMBL
-
Boeckman B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, et al. The Swiss prot protein knowledge base and its supplement TrEMBL. Nucleic Acids Research. 2003; 31:365-370.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 365-370
-
-
Boeckman, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
-
39
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 1983; 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
40
-
-
0035896007
-
C-H....π interactions in proteins
-
Brandl M, Weiss MS, Jabs A, Sühnel J, Hilgenfeld R. C-H....π interactions in proteins. Journal of Molecular Biology. 2001; 307: 357-377.
-
(2001)
Journal of Molecular Biology
, vol.307
, pp. 357-377
-
-
Brandl, M.1
Weiss, M.S.2
Jabs, A.3
Sühnel, J.4
Hilgenfeld, R.5
-
42
-
-
0027255479
-
Structural and Genetic Analysis of Protein Stability
-
Matthews BW. Structural and Genetic Analysis of Protein Stability. Ann. Rev. Biochem. 1993; 62:139-160.
-
(1993)
Ann. Rev. Biochem
, vol.62
, pp. 139-160
-
-
Matthews, B.W.1
|