Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling

Biochemistry

Volumn 39, Issue 2, 2000, Pages 292-299

  Muraki, Michiro ^a   Harata, Kazuaki ^a   Sugita, Naoki ^b   Sato, Ken Ichi ^b  

^a NATL INST BIOSCI HUM TECHNOL   (Japan)

^b KANAGAWA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACID; CARBOHYDRATE; CARBOXYL GROUP; GLUTAMINE; HYDROXYL GROUP; LEUCINE; LYSOZYME; M PROTEIN; N ACETYLGLUCOSAMINE; TYROSINE;

AFFINITY LABELING; ARTICLE; BINDING AFFINITY; HYDROGEN BOND; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; X RAY DIFFRACTION;

AFFINITY LABELS; BINDING SITES; CARBOHYDRATE CONFORMATION; CARBOHYDRATES; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DISACCHARIDES; HUMANS; HYDROGEN BONDING; MODELS, MOLECULAR; MURAMIDASE; MUTAGENESIS, SITE-DIRECTED; X-RAY DIFFRACTION;

EID: 0034681104     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991402q     Document Type: Article

References (44)

1. Quiocho, F. A. (1986) Annu. Rev. Biochem. 55, 287-315.
2. Lee, Y. C., and Lee, R. T. (1996) Acc. Chem. Res. 28, 321-327.
3. Jollès, P., and Jollès, J. (1984) Mol. Cell. Biochem. 63, 165-189.
4. Imoto, T. (1996) in EXS (Jollès, P., Ed.) Vol. 75, pp 163-181, Birkhauser Verlag, Basel.
5. Lee-Huang, S., Huang, P. L., Sun, Y., Huang, P. L., Kung, H.-F., Blithe, D. L., and Chen, H.-C. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 2678-2681.
6. Elgavish, S., and Shaanan, B. (1997) Trends Biochem. Sci. 22, 462-467.
7. Vyas, N. K. (1991) Curr. Opin. Struct. Biol. 1, 732-740.
8. Weis, W. I., and Drickamer, K. (1996) Annu. Rev. Biochem. 65, 441-473.
9. Quiocho, F. A., Spurlino, J. C., and Rodseth, L. E. (1997) Structure 5, 997-1015.
10. Strynadka, N. C. J., and James, M. N. G. (1991) J. Mol. Biol. 220, 401-424.
11. Cheetham, J. C., Artymiuk, P. J., and Phillips, D. C. (1992) J. Mol. Biol. 224, 613-628.
12. Hadfield, A. T., Harvey, D. J., Archer, D. B., MacKenzie, D. A., Jeenes, D. J., Radford, S. E., Lowe, G., Dobson, C. M., and Johnson, L. N. (1994) J. Mol. Biol. 243, 856-872.
13. Song, H., Inaka, K., Maenaka, K., and Matsushima, M. (1994) J. Mol. Biol. 244, 522-540.
14. Noguchi, S., Miyawaki, K., and Satow, Y. (1998) J. Mol. Biol. 278, 231-238.
15. Vollan, V. B., Hough, E., and Karsen, S. (1999) Acta Crystallogr. D55, 60-66.
16. Imberty, A., Bourne, Y., Cambillau, C., Rougé, P., and Pérez, S. (1993) Adv. Biophys. Chem. 3, 71-117.
17. Toone, E. J. (1994) Curr. Opin. Struct. Biol. 4, 719-728.
18. Maenaka, K., Matsushima, M., Kawai, G., Kidera A., Watanabe, K., Kuroki, R., and Kumagai, I. (1998) Biochem. J. 333, 71-76.
19. Maenaka, K., Matsushima, M., Song, H., Sunada, F., Watanabe, K., and Kumagai, I. (1995) J. Mol. Biol. 247, 281-293.
20. White, A., and Rose, D. R. (1997) Curr. Opin. Struct. Biol. 7, 645-651.
21. Withers, S. G., and Abersold, R. (1995) Protein Sci. 4, 361-372.
22. Thomas, E. W., McKelvy, J. F., and Sharon, N. (1969) Nature 222, 485-486.
23. Muraki, M., Harata, K., Sugita, N., and Sato, K.-I. (1996) Biochemistry 35, 13562-13567.
24. Muraki, M., Harata, K., Sugita, N., and Sato, K.-I. (1998) Acta Crystallogr. D54, 834-843.
25. Muraki, M., Harata, K., Sugita, N., and Sato, K.-I. (1999) Biochemistry 38, 540-548.
26. Muraki, M., Morikawa, M., Jigami, Y., and Tanaka, H. (1989) Eur. J. Biochem. 179, 573-579.
27. Muraki, M., Jigami, Y., Tanaka, H., Kishimoto, F., Agui, H., Ogino, S., and Nakasato, S. (1985) Agric. Biol. Chem. 49, 2829-2831.
28. Locquet, J.-P., Saint-Blancard, J., and Jollès, P. (1968) Biochim. Biophys. Acta 167, 150-153.
29. Thomas, E. W. (1970) Carbohydr. Res. 13, 225-228.
30. Brünger, A. T. (1992) X-PLOR ver. 3.1 Manual, pp 1-269, Yale University Press, New Haven and London.
31. Luzzati, V. (1952) Acta Crystallogr. 5, 802-810.
32. Laskowski, R. A., McArthur N. W., Moss, D. S., and Thornton J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
33. Kraulis, P. (1991) J. Appl. Crystallogr. 11, 269-272.
34. Jones, T. A. (1978) J. Appl. Crystallogr. 25, 348-357.
35. Roussel, A., Fontecilla-Camps, J.-C., and Cambillau, C. (1990) J. Mol. Graphics 8, 86-88.
36. Muraki, M., Morikawa, M., Jigami, Y., and Tanaka, H. (1987) Biochim. Biophys. Acta 916, 66-75.
37. Muraki, M., Harata, K., and Jigami, Y. (1992) Biochemistry 31, 9212-9219.
38. Bourne, Y., Rouge, P., and Cambillau, C. (1992) J. Biol. Chem. 267, 197-203.
39. Vyas, M. N., Vyas, N. K., and Quiocho, F. A. (1994) Biochemistry 33, 4762-4768.
40. Kadziola, A., Søgaard, M., Svensson, B., and Haser, R. (1998) J. Mol. Biol. 278, 205-217.
41. Schmidt, A. K., Cottaz, S., Driguez, H., and Schulz, G. E. (1998) Biochemistry 37, 5909-5915.
42. Maenaka, K., Kawai, G., Watanabe, K., Sunada, F., and Kumagai, I. (1994) J. Biol. Chem. 269, 7070-7075.
43. Nishio, M., Hirota, M., and Umezawa, Y. (1998) CH/π interaction. Evidence, Nature, and Consequences, pp 175-202, Wiely-VCH, New York.
44. Mo, F., and Jensen, L. H. (1978) Acta Crystallogr. B34, 1562-1569.