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Volumn 84, Issue 6, 2011, Pages

Scale-free duplication dynamics: A model for ultraduplication

Author keywords

[No Author keywords available]

Indexed keywords

EMPIRICAL STUDIES; GENOME SEQUENCES; LENGTH DISTRIBUTIONS; SCALE-FREE; SELF-SIMILAR; SEQUENCE CORRELATION; STANDARD MODEL;

EID: 84855391244     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.84.061919     Document Type: Article
Times cited : (12)

References (48)
  • 1
    • 25844498846 scopus 로고    scopus 로고
    • Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
    • DOI 10.1146/annurev.genom.6.080604.162146
    • E. A. Stone, G. M. Cooper, and A. Sidow, Ann. Rev. Gen. Hum. Gen. 1527-8204 10.1146/annurev.genom.6.080604.162146 6, 143 (2005). (Pubitemid 41397079)
    • (2005) Annual Review of Genomics and Human Genetics , vol.6 , pp. 143-164
    • Stone, E.A.1    Cooper, G.M.2    Sidow, A.3
  • 4
    • 11744345465 scopus 로고
    • PLRAAN 1050-2947 10.1103/PhysRevA.43.5240
    • W. Li, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.43.5240 43, 5240 (1991).
    • (1991) Phys. Rev. A , vol.43 , pp. 5240
    • Li, W.1
  • 5
    • 18144379899 scopus 로고    scopus 로고
    • Solvable sequence evolution models and genomic correlations
    • DOI 10.1103/PhysRevLett.94.138103, 138103
    • P. W. Messer, P. F. Arndt, and M. Lassig, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.94.138103 94, 138103 (2005); (Pubitemid 40620518)
    • (2005) Physical Review Letters , vol.94 , Issue.13 , pp. 1-4
    • Messer, P.W.1    Arndt, P.F.2    Lassig, M.3
  • 6
    • 27744441032 scopus 로고    scopus 로고
    • PRLTAO 1742-5468 10.1088/1742-5468/2005/10/P10004
    • P. W. Messer, M. Lassig, and P. F. Arndt, J. Stat. Mech. PRLTAO 1742-5468 10.1088/1742-5468/2005/10/P10004 (2005) P10004.
    • J. Stat. Mech. , vol.2005 , pp. 10004
    • Messer, P.W.1    Lassig, M.2    Arndt, P.F.3
  • 9
    • 0018996351 scopus 로고
    • JPRAAJ 0368-3842 10.1051/jphys:01980004103022300
    • J. des Cloizeaux, J. Phys. JPRAAJ 0368-3842 10.1051/jphys: 01980004103022300 41, 223 (1980).
    • (1980) J. Phys. , vol.41 , pp. 223
    • Des Cloizeaux, J.1
  • 13
    • 0026953429 scopus 로고
    • Random texts exhibit Zipf's-law-like word frequency distribution
    • DOI 10.1109/18.165464
    • W. Li, IEEE Trans. Inf. Theor. IETTAW 0018-9448 10.1109/18.165464 38, 1842 (1992). (Pubitemid 23585898)
    • (1992) IEEE Transactions on Information Theory , vol.38 , Issue.6 , pp. 1842-1845
    • Li Wentian1
  • 15
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: Crucibles of evolution, diversity and disease
    • DOI 10.1038/nrg1895, PII N1895
    • J. A. Bailey and E. E. Eichler, Nat. Rev. Gen. FMREE4 1471-0056 10.1038/nrg1895 7, 552 (2006). (Pubitemid 43943572)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 17
    • 33646929269 scopus 로고    scopus 로고
    • MicroRNA enrichment among short 'ultraconserved' sequences in insects
    • DOI 10.1093/nar/gkl173
    • T. Tran, P. Havlak, and J. Miller, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkl173 34, e65 (2006). (Pubitemid 43985646)
    • (2006) Nucleic Acids Research , vol.34 , Issue.9
    • Tran, T.1    Havlak, P.2    Miller, J.3
  • 18
    • 70349624971 scopus 로고    scopus 로고
    • NARHAD 1473-9550 10.1093/bfgp/elp033
    • G. Elgar, Brief Func. Gen. Prot. NARHAD 1473-9550 10.1093/bfgp/elp033 8, 256 (2009);
    • (2009) Brief Func. Gen. Prot. , vol.8 , pp. 256
    • Elgar, G.1
  • 22
    • 84855387834 scopus 로고    scopus 로고
    • See Supplemental Material at for the figure portraying length-distributions for various γ
    • See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevE.84.061919 for the figure portraying length-distributions for various γ.
  • 23
    • 0000430173 scopus 로고
    • APBYAE 0091-1798 10.1214/aop/1176992808
    • R. Arratia and M. S. Waterman, Ann. Prob. APBYAE 0091-1798 10.1214/aop/1176992808 13, 1236 (1985).
    • (1985) Ann. Prob. , vol.13 , pp. 1236
    • Arratia, R.1    Waterman, M.S.2
  • 24
    • 0031298464 scopus 로고    scopus 로고
    • COCHDK 0097-8485 10.1016/S0097-8485(97)00022-3
    • W. Li, Comput. Chem. COCHDK 0097-8485 10.1016/S0097-8485(97)00022-3 21, 257 (1997).
    • (1997) Comput. Chem. , vol.21 , pp. 257
    • Li, W.1
  • 28
    • 33747843694 scopus 로고    scopus 로고
    • CorGen - Measuring and generating long-range correlations for DNA sequence analysis
    • DOI 10.1093/nar/gkl234
    • P. W. Messer and P. F. Arndt, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkl234 34 (SI), W692 (2006). (Pubitemid 44529859)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Messer, P.W.1    Arndt, P.F.2
  • 29
    • 84855387838 scopus 로고    scopus 로고
    • http://corgen.molgen.mpg.de/.
  • 30
    • 0000893861 scopus 로고
    • IJBEE4 0218-1274 10.1142/S0218127492000136
    • W. Li, Int. J. Bifurc. Chaos IJBEE4 0218-1274 10.1142/S0218127492000136 2, 137 (1992).
    • (1992) Int. J. Bifurc. Chaos , vol.2 , pp. 137
    • Li, W.1
  • 32
    • 0023115587 scopus 로고
    • T. Ohta, Genetics 115, 207 (1987).
    • (1987) Genetics , vol.115 , pp. 207
    • Ohta, T.1
  • 36
    • 77952881482 scopus 로고    scopus 로고
    • Limited data for insertions and deletions less than around 60 bases long were obtained in support of an algebraic gap length distribution within certain special genomic regions by, ABIBDL 0273-2289 10.1007/s12010-009-8793-7
    • Limited data for insertions and deletions less than around 60 bases long were obtained in support of an algebraic gap length distribution within certain special genomic regions by J. Zhang, L. Xiao, Y. Yin, P. Sirois, H. Gao, and K. Li, Appl. Biochem. Biotechnol. ABIBDL 0273-2289 10.1007/s12010-009-8793-7 162, 321 (2010);
    • (2010) Appl. Biochem. Biotechnol. , vol.162 , pp. 321
    • Zhang, J.1    Xiao, L.2    Yin, Y.3    Sirois, P.4    Gao, H.5    Li, K.6
  • 37
    • 0028943946 scopus 로고
    • JMEVAU 0022-2844 10.1007/BF00164032
    • X. Gu, W-H. Li, J. Mol. Evol. JMEVAU 0022-2844 10.1007/BF00164032 40, 464 (1995);
    • (1995) J. Mol. Evol. , vol.40 , pp. 464
    • Gu, X.1    Li, W.-H.2
  • 38
    • 0345306317 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes
    • DOI 10.1093/nar/gkg745
    • Z. Zhang and M. Gerstein, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/gkg745 31, 5338 (2003). (Pubitemid 37441902)
    • (2003) Nucleic Acids Research , vol.31 , Issue.18 , pp. 5338-5348
    • Zhang, Z.1    Gerstein, M.2
  • 39
    • 70349873824 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1181369
    • Lieberman-Aiden, Science SCIEAS 0036-8075 10.1126/science.1181369 326, 289 (2009).
    • (2009) Science , vol.326 , pp. 289
    • Lieberman-Aiden1
  • 40
    • 0027323079 scopus 로고
    • SCIEAS 0009-5915 10.1007/BF00360400
    • M. Radman and R. Wagner, Chromosoma SCIEAS 0009-5915 10.1007/BF00360400 102, 369 (1993).
    • (1993) Chromosoma , vol.102 , pp. 369
    • Radman, M.1    Wagner, R.2
  • 42
    • 75549087305 scopus 로고    scopus 로고
    • PHYADX 1471-0056 10.1038/nrg2689
    • H. Innan and F. Kondrashov, Nat. Rev. Gen. PHYADX 1471-0056 10.1038/nrg2689 11, 97 (2010).
    • (2010) Nat. Rev. Gen. , vol.11 , pp. 97
    • Innan, H.1    Kondrashov, F.2
  • 45
    • 0027122449 scopus 로고
    • NATUAS 0028-0836 10.1038/360635b0
    • W. Li and K. Kaneko, Nature (London) NATUAS 0028-0836 10.1038/360635b0 360, 635 (1992).
    • (1992) Nature (London) , vol.360 , pp. 635
    • Li, W.1    Kaneko, K.2
  • 46
    • 76749088015 scopus 로고    scopus 로고
    • NATUAS 1553-7390 10.1371/journal.pgen.1000829
    • R. W. Lusk and M. B. Eisen, PLoS Genetics NATUAS 1553-7390 10.1371/journal.pgen.1000829 6, e1000829 (2010).
    • (2010) PLoS Genetics , vol.6 , pp. 1000829
    • Lusk, R.W.1    Eisen, M.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.