-
1
-
-
0038581531
-
Mutation load, functional overlap, and synthetic lethality in the evolution and treatment of cancer
-
DOI 10.1016/S0022-5193(03)00087-0
-
A Kamb 2003 Mutation load, functional overlap, and synthetic lethality in the evolution and treatment of cancer Journal of Theoretical Biology 223 205 213 10.1016/S0022-5193(03)00087-0 1:CAS:528:DC%2BD3sXksF2htrw%3D (Pubitemid 36694133)
-
(2003)
Journal of Theoretical Biology
, vol.223
, Issue.2
, pp. 205-213
-
-
Kamb, A.1
-
2
-
-
0028331301
-
Does cancer kill the individual and save the species?
-
10.1002/humu.1380030214 1:STN:280:DyaK2c3lvVWlug%3D%3D
-
SS Sommer 1994 Does cancer kill the individual and save the species? Human Mutation 3 166 169 10.1002/humu.1380030214 1:STN:280:DyaK2c3lvVWlug%3D%3D
-
(1994)
Human Mutation
, vol.3
, pp. 166-169
-
-
Sommer, S.S.1
-
3
-
-
0023897656
-
Evolution of cancer genes as a mutation-driven process
-
1:CAS:528:DyaL1cXhs1Clsbk%3D
-
HM Temin 1988 Evolution of cancer genes as a mutation-driven process Cancer Research 48 1697 1701 1:CAS:528:DyaL1cXhs1Clsbk%3D
-
(1988)
Cancer Research
, vol.48
, pp. 1697-1701
-
-
Temin, H.M.1
-
4
-
-
45249106003
-
Near neutrality: Leading edge of the neutral theory of molecular evolution
-
DOI 10.1196/annals.1438.001, The Year in Evolutionary Biology 2008
-
AL Hughes 2008 Near neutrality: leading edge of the neutral theory of molecular evolution Annals of the New York Academy of Sciences 1133 162 179 10.1196/annals.1438.001 (Pubitemid 351841332)
-
(2008)
Annals of the New York Academy of Sciences
, vol.1133
, pp. 162-179
-
-
Hughes, A.L.1
-
6
-
-
0035068773
-
Statistical multilocus methods for disequilibrium analysis in complex traits
-
DOI 10.1002/humu.25
-
J Ott J Hoh 2001 Statistical multilocus methods for disequilibrium analysis in complex traits Human Mutation 17 285 288 10.1002/humu.25 1:CAS:528:DC%2BD3MXjt1WjtbY%3D (Pubitemid 32268403)
-
(2001)
Human Mutation
, vol.17
, Issue.4
, pp. 285-288
-
-
Ott, J.1
Hoh, J.2
-
7
-
-
0035063094
-
3rd international meeting on single nucleotide polymorphism and complex genome analysis: SNPs: 'Some notable progress'
-
DOI 10.1038/sj.ejhg.5200616
-
PS White PY Kwok P Oefner AJ Brookes 2001 3rd international meeting on single nucleotide polymorphism and complex genome analysis: SNPs: 'some notable progress' European Journal of Human Genetics 9 316 318 10.1038/sj.ejhg.5200616 1:STN:280:DC%2BD3Mzot1Gktw%3D%3D (Pubitemid 32366702)
-
(2001)
European Journal of Human Genetics
, vol.9
, Issue.4
, pp. 316-318
-
-
White, P.S.1
Kwok, P.-Y.2
Oefner, P.3
Brookes, A.J.4
-
8
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
DOI 10.1038/35057149
-
R Sachidanandam D Weissman SC Schmidt JM Kakol LD Stein G Marth, et al. 2001 A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms Nature 409 928 933 10.1038/35057149 1:CAS:528:DC%2BD3MXhsFCjtb8%3D (Pubitemid 32165347)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
Marth, G.6
Sherry, S.7
Mullikin, J.C.8
Mortimore, B.J.9
Willey, D.L.10
Hunt, S.E.11
Cole, C.G.12
Coggill, P.C.13
Rice, C.M.14
Ning, Z.15
Rogers, J.16
Bentley, D.R.17
Kwok, P.-Y.18
Mardis, E.R.19
Yeh, R.T.20
Schultz, B.21
Cook, L.22
Davenport, R.23
Dante, M.24
Fulton, L.25
Hillier, L.26
Waterston, R.H.27
McPherson, J.D.28
Gilman, B.29
Schaffner, S.30
Van Etten, W.J.31
Reich, D.32
Higgins, J.33
Daly, M.J.34
Blumenstiel, B.35
Baldwin, J.36
Stange-Thomann, N.37
Zody, M.C.38
Linton, L.39
Lander, E.S.40
Altshuler, D.41
more..
-
9
-
-
24344505990
-
Microdeletions and microinsertions causing human genetic disease: Common mechanisms of mutagenesis and the role of local DNA sequence complexity
-
DOI 10.1002/humu.20212
-
EV Ball PD Stenson SS Abeysinghe M Krawczak DN Cooper NA Chuzhanova 2005 Microdeletions and microinsertions causing human genetic disease: common mechanisms of mutagenesis and the role of local DNA sequence complexity Human Mutation 26 205 213 10.1002/humu.20212 1:CAS:528:DC%2BD2MXhtFSktrbL (Pubitemid 41254376)
-
(2005)
Human Mutation
, vol.26
, Issue.3
, pp. 205-213
-
-
Ball, E.V.1
Stenson, P.D.2
Abeysinghe, S.S.3
Krawczak, M.4
Cooper, D.N.5
Chuzhanova, N.A.6
-
10
-
-
22844446638
-
Complex gene rearrangements caused by serial replication slippage
-
DOI 10.1002/humu.20202
-
JM Chen N Chuzhanova PD Stenson C Férec DN Cooper 2005 Complex gene rearrangements caused by serial replication slippage Human Mutation 26 125 134 10.1002/humu.20202 1:CAS:528:DC%2BD2MXhtVGnsLrE (Pubitemid 41040681)
-
(2005)
Human Mutation
, vol.26
, Issue.2
, pp. 125-134
-
-
Chen, J.-M.1
Chuzhanova, N.2
Stenson, P.D.3
Ferec, C.4
Cooper, D.N.5
-
11
-
-
0037228574
-
Meta-analysis of indels causing human genetic disease: Mechanisms of mutagenesis and the role of local DNA sequence complexity
-
DOI 10.1002/humu.10146
-
NA Chuzhanova EJ Anassis EV Ball M Krawczak DN Cooper 2003 Meta-analysis of indels causing human genetic disease: mechanisms of mutagenesis and the role of local DNA sequence complexity Human Mutation 21 28 44 10.1002/humu.10146 1:CAS:528:DC%2BD3sXot1amuw%3D%3D (Pubitemid 36070454)
-
(2003)
Human Mutation
, vol.21
, Issue.1
, pp. 28-44
-
-
Chuzhanova, N.A.1
Anassis, E.J.2
Ball, E.V.3
Krawczak, M.4
Cooper, D.N.5
-
12
-
-
50849123419
-
Somatic microindels in human cancer: The insertions are highly error-prone and derive from nearby but not adjacent sense and antisense templates
-
10.1093/hmg/ddn190 1:CAS:528:DC%2BD1cXhtVGgt7nF
-
WA Scaringe K Li D Gu KD Gonzalez Z Chen KA Hill SS Sommer 2008 Somatic microindels in human cancer: the insertions are highly error-prone and derive from nearby but not adjacent sense and antisense templates Human Molecular Genetics 17 2910 2918 10.1093/hmg/ddn190 1:CAS:528:DC%2BD1cXhtVGgt7nF
-
(2008)
Human Molecular Genetics
, vol.17
, pp. 2910-2918
-
-
Scaringe, W.A.1
Li, K.2
Gu, D.3
Gonzalez, K.D.4
Chen, Z.5
Hill, K.A.6
Sommer, S.S.7
-
13
-
-
33845934508
-
Somatic microindels: Analysis in mouse soma and comparison with the human germline
-
DOI 10.1002/humu.20416
-
KD Gonzalez KA Hill K Li WA Scaringe JC Wang D Gu, et al. 2007 Somatic microindels: analysis in mouse soma and comparison with the human germline Human Mutation 28 69 80 10.1002/humu.20416 1:CAS:528:DC%2BD2sXhtVWhtr8%3D (Pubitemid 46036215)
-
(2007)
Human Mutation
, vol.28
, Issue.1
, pp. 69-80
-
-
Gonzalez, K.D.1
Hill, K.A.2
Li, K.3
Li, W.4
Scaringe, W.A.5
Wang, J.-C.6
Gu, D.7
Sommer, S.S.8
-
14
-
-
34548052247
-
Database of somatic mutations in EGFR with analyses revealing indel hotspots but no smoking-associated signature
-
DOI 10.1002/humu.20512
-
D Gu WA Scaringe K Li JS Saldivar KA Hill Z Chen, et al. 2007 Database of somatic mutations in EGFR with analyses revealing indel hotspots but no smoking-associated signature Human Mutation 28 760 770 10.1002/humu.20512 1:CAS:528:DC%2BD2sXhtVGrurzN (Pubitemid 47282437)
-
(2007)
Human Mutation
, vol.28
, Issue.8
, pp. 760-770
-
-
Gu, D.1
Scaringe, W.A.2
Li, K.3
Saldivar, J.-S.4
Hill, K.A.5
Chen, Z.6
Gonzalez, K.D.7
Sommer, S.S.8
-
15
-
-
39049145326
-
Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
-
DOI 10.1101/gr.6725608
-
G Lunter A Rocco N Mimouni A Heger A Caldeira J Hein 2008 Uncertainty in homology inferences: assessing and improving genomic sequence alignment Genome Research 18 298 309 10.1101/gr.6725608 1:CAS:528:DC%2BD1cXhvVSrtrw%3D (Pubitemid 351240740)
-
(2008)
Genome Research
, vol.18
, Issue.2
, pp. 298-309
-
-
Lunter, G.1
Rocco, A.2
Mimouni, N.3
Heger, A.4
Caldeira, A.5
Hein, J.6
-
16
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
DOI 10.1038/nature02426
-
RA Gibbs GM Weinstock ML Metzker DM Muzny EJ Sodergren S Scherer, et al. 2004 Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 428 493 521 10.1038/nature02426 1:CAS:528:DC%2BD2cXis1Gks7o%3D (Pubitemid 38480529)
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 493-520
-
-
-
17
-
-
3342888069
-
Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments
-
DOI 10.1016/j.jmb.2004.05.045, PII S0022283604006151
-
MS Chang SA Benner 2004 Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments Journal of Molecular Biology 341 617 631 10.1016/j.jmb.2004.05.045 1:CAS:528:DC%2BD2cXmtVaju70%3D (Pubitemid 38987792)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.2
, pp. 617-631
-
-
Chang, M.S.S.1
Benner, S.A.2
-
18
-
-
0028943946
-
The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment
-
10.1007/BF00164032 1:CAS:528:DyaK2MXltVektro%3D
-
X Gu WH Li 1995 The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment Journal of Molecular Evolution 40 464 473 10.1007/BF00164032 1:CAS:528:DyaK2MXltVektro%3D
-
(1995)
Journal of Molecular Evolution
, vol.40
, pp. 464-473
-
-
Gu, X.1
Li, W.H.2
-
19
-
-
33846602331
-
Logarithmic gap costs decrease alignment accuracy
-
DOI 10.1186/1471-2105-7-527
-
RA Cartwright 2006 Logarithmic gap costs decrease alignment accuracy BMC Bioinformatics 7 527 10.1186/1471-2105-7-527 (Pubitemid 46178686)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 527
-
-
Cartwright, R.A.1
-
20
-
-
33847257936
-
Indelign: A probabilistic framework for annotation of insertions and deletions in a multiple alignment
-
DOI 10.1093/bioinformatics/btl578
-
J Kim S Sinha 2007 Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment Bioinformatics 23 289 297 10.1093/bioinformatics/btl578 1:CAS:528:DC%2BD2sXhtlOltLY%3D (Pubitemid 46323150)
-
(2007)
Bioinformatics
, vol.23
, Issue.3
, pp. 289-297
-
-
Kim, J.1
Sinha, S.2
-
21
-
-
34547830856
-
Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes
-
DOI 10.1093/bioinformatics/btm185
-
G Lunter 2007 Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes Bioinformatics 23 i289 i296 10.1093/bioinformatics/btm185 1:CAS:528:DC%2BD2sXos1ykurk%3D (Pubitemid 47244412)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Lunter, G.1
-
22
-
-
33845887966
-
Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane, maize and rice
-
DOI 10.1093/dnares/dsl012
-
K Yamane K Yano T Kawahara 2006 Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane, maize and rice DNA Research 13 197 204 10.1093/dnares/dsl012 1:CAS:528:DC%2BD2sXms1Gksw%3D%3D (Pubitemid 46026343)
-
(2006)
DNA Research
, vol.13
, Issue.5
, pp. 197-204
-
-
Yamane, K.1
Yano, K.2
Kawahara, T.3
-
23
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenohabditis elegans nuclear genome
-
DOI 10.1038/nature02697
-
DR Denver K Morris M Lynch WK Thomas 2004 High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome Nature 430 679 682 10.1038/nature02697 1:CAS:528:DC%2BD2cXmt1Gis7k%3D (Pubitemid 39061683)
-
(2004)
Nature
, vol.430
, Issue.7000
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
24
-
-
33645798112
-
Genome-wide identification of human functional DNA using a neutral indel model
-
10.1371/journal.pcbi.0020005
-
G Lunter CP Ponting J Hein 2006 Genome-wide identification of human functional DNA using a neutral indel model PLoS Computational Biology 2 e5 10.1371/journal.pcbi.0020005
-
(2006)
PLoS Computational Biology
, vol.2
, pp. 5
-
-
Lunter, G.1
Ponting, C.P.2
Hein, J.3
-
25
-
-
0031875569
-
Evolutionary distances for protein-coding sequences: Modeling site-specific residue frequencies
-
1:CAS:528:DyaK1cXksFCitrw%3D
-
AL Halpern WJ Bruno 1998 Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies Molecular Biology and Evolution 15 910 917 1:CAS:528:DyaK1cXksFCitrw%3D
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 910-917
-
-
Halpern, A.L.1
Bruno, W.J.2
-
26
-
-
58449127271
-
Problems and solutions for estimating indel rates and length distributions
-
10.1093/molbev/msn275 1:CAS:528:DC%2BD1MXntVCisw%3D%3D
-
RA Cartwright 2009 Problems and solutions for estimating indel rates and length distributions Molecular Biology and Evolution 26 473 480 10.1093/molbev/msn275 1:CAS:528:DC%2BD1MXntVCisw%3D%3D
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 473-480
-
-
Cartwright, R.A.1
-
27
-
-
0345306317
-
Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes
-
DOI 10.1093/nar/gkg745
-
Z Zhang M Gerstein 2003 Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes Nucleic Acids Research 31 5338 5348 10.1093/nar/gkg745 1:CAS:528:DC%2BD3sXntVKgsrc%3D (Pubitemid 37441902)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.18
, pp. 5338-5348
-
-
Zhang, Z.1
Gerstein, M.2
-
28
-
-
77952876568
-
Small insertions and deletions is revealed in association with the number of inserted or deleted nucleotides
-
K Li 2006 Small insertions and deletions is revealed in association with the number of inserted or deleted nucleotides J Nanhua University 34 1-2 9
-
(2006)
J Nanhua University
, vol.34
, Issue.12
, pp. 9
-
-
Li, K.1
-
29
-
-
77952880875
-
-
(Oct 9-13, 2006) 56th ASHG, New Orleans, USA
-
Li, K., Xiao, L., Yin, Y. F., & Zhang, J. (Oct 9-13, 2006) How to associate the somatic mutations and a specific cancer. 56th ASHG, New Orleans, USA.
-
How to Associate the Somatic Mutations and A Specific Cancer
-
-
Li, K.1
Xiao, L.2
Yin, Y.F.3
Zhang, J.4
-
30
-
-
1842717956
-
Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes
-
DOI 10.1101/gr.1977804
-
MS Taylor CP Ponting RR Copley 2004 Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes Genome Research 14 555 566 10.1101/gr.1977804 1:CAS:528:DC%2BD2cXjt1yjsbY%3D (Pubitemid 38500226)
-
(2004)
Genome Research
, vol.14
, Issue.4
, pp. 555-566
-
-
Taylor, M.S.1
Ponting, C.P.2
Copley, R.R.3
-
31
-
-
0025633582
-
Germ line p53 mutations in a familial syndrome of breast cancer, sarcomas, and other neoplasms
-
10.1126/science.1978757 1:CAS:528:DyaK3MXjslSisw%3D%3D
-
D Malkin FP Li LC Strong JF Fraumeni Jr CE Nelson DH Kim, et al. 1990 Germ line p53 mutations in a familial syndrome of breast cancer, sarcomas, and other neoplasms Science 250 1233 1238 10.1126/science.1978757 1:CAS:528:DyaK3MXjslSisw%3D%3D
-
(1990)
Science
, vol.250
, pp. 1233-1238
-
-
Malkin, D.1
Li, F.P.2
Strong, L.C.3
Fraumeni Jr, J.F.4
Nelson, C.E.5
Kim, D.H.6
-
32
-
-
0030265337
-
The p53-deficient mouse: A model for basic and applied cancer studies
-
DOI 10.1006/scbi.1996.0035
-
LA Donehower 1996 The p53-deficient mouse: a model for basic and applied cancer studies Seminars in Cancer Biology 7 269 278 10.1006/scbi.1996.0035 1:CAS:528:DyaK2sXivVars7s%3D (Pubitemid 27182786)
-
(1996)
Seminars in Cancer Biology
, vol.7
, Issue.5
, pp. 269-278
-
-
Donehower, L.A.1
-
33
-
-
0025894713
-
P53 mutations in human cancers
-
10.1126/science.1905840 1:CAS:528:DyaK3MXks1Gmurg%3D
-
M Hollstein D Sidransky B Vogelstein CC Harris 1991 p53 mutations in human cancers Science 253 49 53 10.1126/science.1905840 1:CAS:528: DyaK3MXks1Gmurg%3D
-
(1991)
Science
, vol.253
, pp. 49-53
-
-
Hollstein, M.1
Sidransky, D.2
Vogelstein, B.3
Harris, C.C.4
-
34
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
DOI 10.1126/science.1133427
-
T Sjöblom S Jones LD Wood DW Parsons J Lin TD Barber, et al. 2006 The consensus coding sequences of human breast and colorectal cancers Science 314 268 274 10.1126/science.1133427 (Pubitemid 44571966)
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.V.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
|