Erratum: Proteomic analysis of mitochondria in APOE transgenic mice and in response to an ischemic challenge (Journal of Cerebral Blood Flow and Metabolism (2012) 32 (164-176) DOI: 10.1038/jcbfm.2011.120);Proteomic analysis of mitochondria in APOE transgenic mice and in response to an ischemic challenge

Journal of Cerebral Blood Flow and Metabolism

Volumn 32, Issue 1, 2012, Pages 164-176

  James, Rachel ^a   Searcy, James L ^a   Le Bihan, Thierry ^a   Martin, Sarah F ^a   Gliddon, Catherine M ^a   Povey, Joanne ^a,b   Deighton, Ruth F ^a   Kerr, Lorraine E ^a   McCulloch, James ^a   Horsburgh, Karen ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF OTAGO   (New Zealand)

Author keywords

apolipoprotein E; ischemia; mitochondria; proteomics

Indexed keywords

APOLIPOPROTEIN E3; APOLIPOPROTEIN E4; ATP5D PROTEIN; ATP5H PROTEIN; ATP5J PROTEIN; ATP6V1A PROTEIN; BRAIN PROTEIN; COX7A2 PROTEIN; CYB5B PROTEIN; ETFA PROTEIN; GLUL PROTEIN; HSP90AB1 PROTEIN; HSPA1B PROTEIN; IARS2 PROTEIN; LONP1 PROTEIN; MALATE DEHYDROGENASE; NDUFA11 PROTEIN; NDUFB10 PROTEIN; NDUFB5 PROTEIN; NDUFS3 PROTEIN; OXR1 PROTEIN; PEROXIREDOXIN 1; PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE; PHYHIPL PROTEN; SLC25A11 PROTEIN; SOD1 PROTEIN; SUCLA2 PROTEIN; UNCLASSIFIED DRUG; UNINDEXED DRUG; UQCRC1 PROTEIN; UQCRH PROTEIN;

ANTIBODY DETECTION; APOPTOSIS; ARTICLE; CONTROLLED STUDY; ELECTRON TRANSPORT; ENERGY YIELD; HIPPOCAMPAL CA1 REGION; HIPPOCAMPUS; HYPOXIC ISCHEMIC ENCEPHALOPATHY; LIPID METABOLISM; MALE; MITOCHONDRION; MOUSE; NERVOUS SYSTEM DEVELOPMENT; NONHUMAN; OXIDATIVE PHOSPHORYLATION; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; RESPIRATORY CHAIN; SHAM PROCEDURE;

EID: 84855358514     PISSN: 0271678X     EISSN: 15597016     Source Type: Journal    
DOI: 10.1038/jcbfm.2011.141     Document Type: Erratum

References (42)

1. Barsnes H, Vizcaino JA, Eidhammer I, Martens L (2009) PRIDE converter: making proteomics data-sharing easy. Nat Biotechnol 27:598-9
2. Cai Q, Sheng ZH (2009) Mitochondrial transport and docking in axons. Exp Neurol 218:257-67
3. Chan PH, Kawase M, Murakami K, Chen SF, Li Y, Calagui B, Reola L, Carlson E, Epstein CJ (1998) Overexpression of SOD1 in transgenic rats protects vulnerable neurons against ischemic damage after global cerebral ischemia and reperfusion. J Neurosci 18:8292-9 (Pubitemid 28465005)
4. Chang S, ran Ma T, Miranda RD, Balestra ME, Mahley RW, Huang Y (2005) Lipid-and receptor-binding regions of apolipoprotein E4 fragments act in concert to cause mitochondrial dysfunction and neurotoxicity. Proc Natl Acad Sci USA 102:18694-9 (Pubitemid 43011288)
5. Choi J, Forster MJ, McDonald SR, Weintraub ST, Carroll CA, Gracy RW (2004) Proteomic identification of specific oxidized proteins in ApoE-knockout mice: relevance to Alzheimer's disease. Free Radic Biol Med 36:1155-62 (Pubitemid 38479869)
6. De Leon MJ, Convit A, Wolf OT, Tarshish CY, DeSanti S, Rusinek H, Tsui W, Kandil E, Scherer AJ, Roche A, Imossi A, Thorn E, Bobinski M, Caraos C, Lesbre P, Schlyer D, Poirier J, Reisberg B, Fowler J (2001) Prediction of cognitive decline in normal elderly subjects with 2-[(18)F]fluoro-2-deoxy-D-glucose/poi- tron-emission tomography (FDG/PET). Proc Natl Acad Sci USA 98:10966-71 (Pubitemid 32878727)
7. Deighton RF, Kerr LE, Short DM, Allerhand M, Whittle IR, McCulloch J (2010) Network generation enhances interpretation of proteomic data from induced apoptosis. Proteomics 10:1307-15
8. Elliott NA, Volkert MR (2004) Stress induction and mitochondrial localization of Oxr1 proteins in yeast and humans. Mol Cell Biol 24:3180-7 (Pubitemid 38452064)
9. Forner F, Arriaga EA, Mann M (2006) Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins. J Proteome Res 5:3277-87 (Pubitemid 44904319)
10. Harris FM, Brecht WJ, Xu Q, Tesseur I, Kekonius L, Wyss-Coray T, Fish JD, Masliah E, Hopkins PC, Scearce-Levie K, Weisgraber KH, Mucke L, Mahley RW, Huang Y (2003) Carboxyl-terminal-truncated apolipoprotein E4 causes Alzheimer's disease-like neurodegeneration and behavioral deficits in transgenic mice. Proc Natl Acad Sci USA 100:10966-71 (Pubitemid 37140136)
11. Horsburgh K, McCarron MO, White F, Nicoll JA (2000a) The role of apolipoprotein E in Alzheimer's disease, acute brain injury and cerebrovascular disease: evidence of common mechanisms and utility of animal models. Neurobiol Aging 21:245-55 (Pubitemid 30387083)
12. Horsburgh K, McCulloch J, Nilsen M, Roses AD, Nicoll JA (2000b) Increased neuronal damage and apoE immuno-reactivity in human apolipoprotein E, E4 isoform-specific, transgenic mice after global cerebral ischaemia. Eur J Neurosci 12:4309-17 (Pubitemid 32037839)
13. Huang Y, Weisgraber KH, Mucke L, Mahley RW (2004) Apolipoprotein E: diversity of cellular origins, structural and biophysical properties, and effects in Alzheimer's disease. J Mol Neurosci 23:189-204 (Pubitemid 41389385)
14. Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4:44-57
15. Hwang IK, Yoo KY, Kim DW, Lee CH, Choi JH, Kwon YG, Kim YM, Choi SY, Won MH (2010) Changes in the expression of mitochondrial peroxiredoxin and thior-edoxin in neurons and glia and their protective effects in experimental cerebral ischemic damage. Free Radic Biol Med 48:1242-51
16. Iacobazzi V, Palmieri F, Runswick MJ, Walker JE (1992) Sequences of the human and bovine genes for the mitochondrial 2-oxoglutarate carrier. DNA Seq 3: 79-88
17. Kelly S, McCulloch J, Horsburgh K (2001) Minimal ischaemic neuronal damage and HSP70 expression in MF1 strain mice following bilateral common carotid artery occlusion. Brain Res 914:185-95 (Pubitemid 32905445)
18. Kislinger T, Cox B, Kannan A, Chung C, Hu P, Ignatchenko A, Scott MS, Gramolini AO, Morris Q, Hallett MT, Rossant J, Hughes TR, Frey B, Emili A (2006) Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell 125:173-86
19. Koutsopoulos OS, Laine D, Osellame L, Chudakov DM, Parton RG, Frazier AE, Ryan MT (2010) Human Miltons associate with mitochondria and induce microtubule-dependent remodeling of mitochondrial networks. Biochim Biophys Acta 1803:564-74
20. Le Bihan T, Grima R, Martin S, Forster T, Le Bihan Y (2010) Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatogra-phy/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification. Rapid Commun Mass Spec-trom 24:1093-104
21. Lutz T, Neupert W, Herrmann JM (2003) Import of small Tim proteins into the mitochondrial intermembrane space. EMBO J 22:4400-8 (Pubitemid 37087194)
22. Ly CV, Verstreken P (2006) Mitochondria at the synapse. Neuroscientist 12:291-9 (Pubitemid 44050857)
23. Magistretti PJ, Pellerin L (1999) Cellular mechanisms of brain energy metabolism and their relevance to functional brain imaging. Philos Trans R Soc Lond B Biol Sci 354:1155-63 (Pubitemid 29400898)
24. Mattson MP, Gleichmann M, Cheng A (2008) Mitochondria in neuroplasticity and neurological disorders. Neuron 60:748-66
25. Mielke R, Zerres K, Uhlhaas S, Kessler J, Heiss WD (1998) Apolipoprotein E polymorphism influences the cerebral metabolic pattern in Alzheimer's disease. Neurosci Lett 254:49-52 (Pubitemid 28430622)
26. Misko A, Jiang S, Wegorzewska I, Milbrandt J, Baloh RH (2010) Mitofusin 2 is necessary for transport of axonal mitochondria and interacts with the Miro/Milton complex. J Neurosci 30:4232-40
27. Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wis-niewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M (2003) Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115:629-40 (Pubitemid 37508523)
28. Nakamura T, Watanabe A, Fujino T, Hosono T, Michikawa M (2009) Apolipoprotein E4 (1-272) fragment is associated with mitochondrial proteins and affects mitochon-drial function in neuronal cells. Mol Neurodegener 4:35
29. Nilsson T, Mann M, Aebersold R, Yates JR, III, Bairoch A, Bergeron JJ (2010) Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods 7:681-5
30. Niizuma K, Yoshioka H, Chen H, Kim GS, Jung JE, Katsu M, Okami N, Chan PH (2010) Mitochondrial and apoptotic neuronal death signaling pathways in cerebral ischemia. Biochim Biophys Acta 1802:92-9
31. Ong SE, Mann M (2005) Mass spectrometry-based proteo-mics turns quantitative. Nat Chem Biol 1:252-62
32. Rintoul GL, Reynolds IJ (2010) Mitochondrial trafficking and morphology in neuronal injury. Biochim Biophys Acta 1802:143-50
33. Russo GJ, Louie K, Wellington A, Macleod GT, Hu F, Panchumarthi S, Zinsmaier KE (2009) Drosophila Miro is required for both anterograde and retrograde axonal mitochondrial transport. J Neurosci 29:5443-55
34. Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostuko-vich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J (2003) TM4: a free, open-source system for microarray data management and analysis. Biotech-niques 34:374-8 (Pubitemid 36184095)
35. Saunders AM, Strittmatter WJ, Schmechel D, George-Hyslop PH, Pericak-Vance MA, Joo SH, Rosi BL, Gusella JF, Crapper-MacLachlan DR, Alberts MJ, Hulette C, Crain B, Goldgaber D, Roses AD (1993) Association of apolipoprotein E allele epsilon 4 with late-onset familial and sporadic Alzheimer's disease. Neurology 43:1467-72 (Pubitemid 23230526)
36. Sheng H, Laskowitz DT, Bennett E, Schmechel DE, Bart RD, Saunders AM, Pearlstein RD, Roses AD, Warner DS (1998) Apolipoprotein E isoform-specific differences in outcome from focal ischemia in transgenic mice. J Cereb Blood Flow Metab 18:361-6 (Pubitemid 28166510)
37. Shenk JC, Liu J, Fischbach K, Xu K, Puchowicz M, Obrenovich ME, Gasimov E, Alvarez LM, Ames BN, Lamanna JC, Aliev G (2009) The effect of acetyl-L-carnitine and R-alpha-lipoic acid treatment in ApoE4 mouse as a model of human Alzheimer's disease. J Neurol Sci 283:199-206
38. Strum JC, Shehee R, Virley D, Richardson J, Mattie M, Selley P, Ghosh S, Nock C, Saunders A, Roses A (2007) Rosiglitazone induces mitochondrial biogenesis in mouse brain. J Alzheimers Dis 11:45-51 (Pubitemid 46376708)
39. Stewart II, Zhao L, Le Bihan T, Larsen B, Scozzaro S, Figeys D, Mao GD, Ornatsky O, Dharsee M, Orsi C, Ewing R, Goh T (2004) The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples. Rapid Commun Mass Spectrom 18:1697-710 (Pubitemid 39024916)
40. Tesseur I, Van Dorpe J, Bruynseels K, Bronfman F, Sciot R, Van Lommel A, Van Leuven F (2000) Prominent axono-pathy and disruption of axonal transport in transgenic mice expressing human apolipoprotein E4 in neurons of brain and spinal cord. Am J Pathol 157:1495-510
41. Wang W, Zhou H, Lin H, Roy S, Shaler TA, Hill LR, Norton S, Kumar P, Anderle M, Becker CH (2003) Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal Chem 75:4818-26 (Pubitemid 37139783)
42. Xu PT, Schmechel D, Rothrock-Christian T, Burkhart DS, Qiu HL, Popko B, Sullivan P, Maeda N, Saunders AM, Roses AD, Gilbert JR (1996) Human apolipoprotein E2, E3, and E4 isoform-specific transgenic mice: human-like pattern of glial and neuronal immunoreactivity in central nervous system not observed in wildtype mice. Neurobiol Dis 3:229-45 (Pubitemid 26391326)