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Volumn 135, Issue 24, 2011, Pages

Cotranscriptional folding kinetics of ribonucleic acid secondary structures

Author keywords

[No Author keywords available]

Indexed keywords

CHAIN ELONGATION; CONFORMATIONAL ENSEMBLE; CONFORMATIONAL POPULATION; END-PRODUCTS; FOLDING INTERMEDIATES; FOLDING KINETICS; FOLDING PATHWAY; FOLDING PROCESS; POPULATION KINETICS; QUANTITATIVE PREDICTION; REFOLDING KINETICS; RIBONUCLEIC ACID; RNA FOLDING; ROD-LIKE STRUCTURES; SECONDARY STRUCTURES; TRANSITION PATHWAY;

EID: 84855269212     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3671644     Document Type: Article
Times cited : (38)

References (42)
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
    • DOI 10.1016/S0092-8674(04)00045-5
    • D. P. Bartel, Cell 116, 281 (2004). 10.1016/S0092-8674(04)00045-5 (Pubitemid 38167318)
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 0035984639 scopus 로고    scopus 로고
    • Regulation by transcription attenuation in bacteria: How RNA provides instructions for transcription termination/antitermination decisions
    • DOI 10.1002/bies.10125
    • T. M. Henkin and C. Yanofsky, Bioessays 24, 700 (2002). 10.1002/bies.10125 (Pubitemid 34850326)
    • (2002) BioEssays , vol.24 , Issue.8 , pp. 700-707
    • Henkin, T.M.1    Yanofsky, C.2
  • 5
    • 17644366759 scopus 로고    scopus 로고
    • Transcription attenuation: A highly conserved regulatory strategy used by bacteria
    • DOI 10.1016/j.tig.2005.03.002
    • E. Merino and C. Yanofsky, Trends Genet. 21, 260 (2005). 10.1016/j.tig.2005.03.002 (Pubitemid 40558929)
    • (2005) Trends in Genetics , vol.21 , Issue.5 , pp. 260-264
    • Merino, E.1    Yanofsky, C.2
  • 6
    • 0031576356 scopus 로고    scopus 로고
    • Programmed cell death by hok/sok of plasmid R1: Processing at the hok mRNA 3'-end triggers structural rearrangements that allow translation and antisense RNA binding
    • DOI 10.1006/jmbi.1997.1294
    • T. Franch, A. P. Gultyaev, and K. Gerder, J. Mol. Biol. 273, 38 (1997). 10.1006/jmbi.1997.1294 (Pubitemid 27460212)
    • (1997) Journal of Molecular Biology , vol.273 , Issue.1 , pp. 38-51
    • Franch, T.1    Gultyaev, A.P.2    Gerdes, K.3
  • 7
    • 0038475911 scopus 로고    scopus 로고
    • Effect of transcription on folding of the Tetrahymena ribozyme
    • DOI 10.1261/rna.5200903
    • S. L. Heilman-Miller and S. A. Woodson, RNA 9, 722 (2003). 10.1261/rna.5200903 (Pubitemid 36618200)
    • (2003) RNA , vol.9 , Issue.6 , pp. 722-733
    • Heilman-Miller, S.L.1    Woodson, S.A.2
  • 8
    • 0021099454 scopus 로고
    • 10.1021/bi00279a014
    • S. L. Brehm and T. R. Cech, Biochemistry 22, 2390 (1983). 10.1021/bi00279a014
    • (1983) Biochemistry , vol.22 , pp. 2390
    • Brehm, S.L.1    Cech, T.R.2
  • 11
    • 0036864241 scopus 로고    scopus 로고
    • Folding mechanisms of group I ribozymes: Role of stability and contact order
    • DOI 10.1042/BST0301166
    • S. A. Woodson, Biochem. Soc. Trans. 30, 1166 (2002). 10.1042/BST0301166 (Pubitemid 36002431)
    • (2002) Biochemical Society Transactions , vol.30 , Issue.6 , pp. 1166-1169
    • Woodson, S.A.1
  • 14
    • 15944382675 scopus 로고    scopus 로고
    • The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
    • DOI 10.1016/j.molcel.2005.02.032
    • J. R. Wickiser, W. C. Winkler, R. R. Breaker, and D. M. Crothers, Mol. Cell 18, 49 (2005). 10.1016/j.molcel.2005.02.032 (Pubitemid 40444647)
    • (2005) Molecular Cell , vol.18 , Issue.1 , pp. 49-60
    • Wickiser, J.K.1    Winkler, W.C.2    Breaker, R.R.3    Crothers, D.M.4
  • 16
    • 34447548824 scopus 로고    scopus 로고
    • Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control
    • DOI 10.1002/cbic.200700057
    • R. Renate, L. Kathrin, G. Dagmar, and M. Ronald, ChemBioChem 8, 896 (2007). 10.1002/cbic.200700057 (Pubitemid 47194838)
    • (2007) ChemBioChem , vol.8 , Issue.8 , pp. 896-902
    • Rieder, R.1    Lang, K.2    Graber, D.3    Micura, R.4
  • 18
    • 0032512621 scopus 로고    scopus 로고
    • Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm
    • DOI 10.1006/jmbi.1997.1384
    • A. P. Gultyaev, F. H. van Batenburg, and C. W. Pleij, J. Mol. Biol. 276, 43 (1998). 10.1006/jmbi.1997.1384 (Pubitemid 28085409)
    • (1998) Journal of Molecular Biology , vol.276 , Issue.1 , pp. 43-55
    • Gultyaev, A.P.1    Van Batenburg, F.H.D.2    Pleij, C.W.A.3
  • 20
    • 0019779738 scopus 로고
    • 10.1016/0022-2836(81)90008-5
    • R. Nussinov and I. Tinoco Jr., J. Mol. Biol. 151, 519 (1981). 10.1016/0022-2836(81)90008-5
    • (1981) J. Mol. Biol. , vol.151 , pp. 519
    • Nussinov, R.1    Tinoco, Jr.I.2
  • 32
    • 33646191609 scopus 로고    scopus 로고
    • 10.1529/biophysj.105.062935
    • W. B. Zhang and S. J. Chen, Biophys. J. 90, 765 (2006). 10.1529/biophysj.105.062935
    • (2006) Biophys. J. , vol.90 , pp. 765
    • Zhang, W.B.1    Chen, S.J.2
  • 35
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • DOI 10.1006/jmbi.1999.2700
    • D. H. Mathews, J. Sabina, M. Zuker, and D. H. Turner, J. Mol. Biol. 288, 911 (1999). 10.1006/jmbi.1999.2700 (Pubitemid 29248642)
    • (1999) Journal of Molecular Biology , vol.288 , Issue.5 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 37
    • 0034737593 scopus 로고    scopus 로고
    • Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase
    • DOI 10.1126/science.287.5462.2497
    • R. J. Davenport, G. J. Wuite, R. Landick, and C. Bustamante, Science 287, 2497 (2000). 10.1126/science.287.5462.2497 (Pubitemid 30185447)
    • (2000) Science , vol.287 , Issue.5462 , pp. 2497-2500
    • Davenport, R.J.1    Wuite, G.J.L.2    Landick, R.3    Bustamante, C.4
  • 40
    • 0036816641 scopus 로고    scopus 로고
    • Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical 'footprinting'
    • DOI 10.1016/S0959-440X(02)00366-4
    • M. Brenowitz, M. R. Chance, G. Dhavan, and K. Takamoto, Curr. Opin. Struct. Biol. 12, 648 (2002) 10.1016/S0959-440X(02)00366-4 (Pubitemid 35449074)
    • (2002) Current Opinion in Structural Biology , vol.12 , Issue.5 , pp. 648-653
    • Brenowitz, M.1    Chance, M.R.2    Dhavan, G.3    Takamoto, K.4
  • 41
    • 31544474375 scopus 로고    scopus 로고
    • DNA nanomechanical switches under folding kinetics control
    • DOI 10.1021/nl052161c
    • V. Viasnoff, A. Meller, and H. Isambert, Nano Lett. 6, 101 (2006). 10.1021/nl052161c (Pubitemid 43166109)
    • (2006) Nano Letters , vol.6 , Issue.1 , pp. 101-104
    • Viasnoff, V.1    Meller, A.2    Isambert, H.3
  • 42
    • 26444620938 scopus 로고    scopus 로고
    • The kinetics of ligand binding by an adenine-sensing riboswitch
    • DOI 10.1021/bi051008u
    • J. K. Wickiser, M. T. Cheah, R. R. Breaker, and D. M. Crothers, Biochemistry 44, 13404 (2005). 10.1021/bi051008u (Pubitemid 41429463)
    • (2005) Biochemistry , vol.44 , Issue.40 , pp. 13404-13414
    • Wickiser, J.K.1    Cheah, M.T.2    Breaker, R.R.3    Crothers, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.