Folding of a large ribozyme during transcription and the effect of the elongation factor NusA

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 17, 1999, Pages 9545-9550

  Pan, Tao ^a,c   Artsimovitch, Irina ^b   Fang, Xing Wang ^a   Landick, Robert ^b   Sosnick, Tobin R ^a,c  

^a UNIVERSITY OF CHICAGO   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c Dept of Biochem and Molec Biology ^*  (United States)

Author keywords

Cotranscriptional RNA folding; Pausing

Indexed keywords

ELONGATION FACTOR; PROTEIN NUS A; RIBONUCLEASE P; RIBOZYME; RNA POLYMERASE; UNCLASSIFIED DRUG;

ARTICLE; BACTEROIDES FRAGILIS; ENZYME ACTIVITY; ENZYME SYNTHESIS; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN DOMAIN; PROTEIN FOLDING; RNA ANALYSIS;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; BACTERIOPHAGE T7; ENDORIBONUCLEASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MAGNESIUM; PEPTIDE ELONGATION FACTORS; PROTEIN FOLDING; RIBONUCLEASE P; RNA, BACTERIAL; RNA, CATALYTIC; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0033578330     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.17.9545     Document Type: Article

References (34)

1. Netzer, W. J. & Hartl, F. U. (1997) Nature (London) 388, 343-349.
2. Altman, S., Kirsebom, L. & Talbot, S. (1993) FASEB J. 7, 7-14.
3. Pace, N. R. & Brown, J. W. (1995) J. Bacteriol. 177, 1919-1928.
4. Pan, T. & Sosnick, T. R. (1997) Nat. Struct. Biol. 4, 931-938.
5. Pan, T., Fang, X. & Sosnick, T. (1999) J. Mol. Biol. 286, 721-731.
6. Brehm, S. L. & Cech, T. R. (1983) Biochemistry 22, 2390-2397.
7. Zarrinkar, P. P. & Williamson, J. R. (1994) Science 265, 918-924.
8. Zhang, F., Ramsay, E. S. & Woodson, S. A. (1995) RNA 1, 284-292.
9. Lewicki, B. T., Margus, T., Remme, J. & Nierhaus, K. H. (1993) J. Mol. Biol. 231, 581-593.
10. Uptain, S. M., Kane, C. M. & Chamberlin, M. J. (1997) Annu. Rev. Biochem. 66, 117-172.
11. Landick, R. (1997) Cell 88, 741-744.
12. Wang, D., Severinov, K. & Landick, R. (1997) Proc. Natl. Acad. Sci. USA 94, 8433-8438.
13. Schmidt, M. C. & Chamberlin, M. J. (1984) Biochemistry 23, 197-203.
14. Landick, R., Stewart, J. & Lee, D. N. (1990) Genes Dev. 4, 1623-1636.
15. Hager, D. A., Jin, D. J. & Burgess, R. R. (1990) Biochemistry 29, 7890-7894.
16. Studier, F. W., Rosenberg, A. H., Dunn, J. J. & Dubendorff, J. W. (1990) Methods Enzymol. 185, 60-89.
17. Pan, T. & Zhong, K. (1994) Biochemistry 33, 14207-14212.
18. Pan, T. & Jakacka, M. (1996) EMBO J. 15, 2249-2255.
19. Reich, C., Gardiner, K. J., Olsen, G. J., Pace, B., Marsh, T. L. & Pace, N. R. (1986) J. Biol. Chem. 261, 7888-7893.
20. Landick, R., Wang, D. & Chan, C. L. (1996) Methods Enzymol. 274, 334-353.
21. Pan, T. (1995) Biochemistry 34, 902-909.
22. Loria, A. & Pan, T. (1996) RNA 2, 551-563.
23. Lopez, P. J., Iost, I. & Dreyfus, M. (1994) Nucleic Acids Res. 22, 1186-1193.
24. Chao, M. Y., Kan, M. C. & Lin-Chao, S. (1995) Nucleic Acids Res. 23, 1691-1695.
25. Lyakhov, D. L., He, B., Zhang, X., Studier, F. W., Dunn, J. J. & McAllister, W. T. (1998) J. Mol. Biol. 280, 201-213.
26. Winkler, M. E. & Yanofsky, C. (1981) Biochemistry 20, 3738-3744.
27. Farnham, P. J., Greenblatt, J. & Platt, T. (1982) Cell 29, 945-951.
28. Theissen, G., Pardon, B. & Wagner, R. (1990) Anal. Biochem. 189, 254-261.
29. Gill, S. C., Weitzel, S. E. & von Hippel, P. H. (1991) J. Mol. Biol. 220, 307-324.
30. Liu, K., Zhang, Y., Severinov, K., Das, A. & Hanna, M. M. (1996) EMBO J. 15, 150-161.
31. Farnham, P. J. & Platt, T. (1981) Nucleic Acids Res. 9, 563-577.
32. Chan, C. L. & Landick, R. (1989) J. Biol. Chem. 264, 20796-20804.
33. Sigmund, C. D. & Morgan, E. A. (1988) Biochemistry 27, 5628-5635.
34. Landick, R. & Yanofsky, C. (1987) J. Mol. Biol. 196, 363-377.