Recent progresses on the genetic basis of the regulation of CO2 acquisition systems in response to CO2 concentration

Photosynthesis Research

Volumn 109, Issue 1-3, 2011, Pages 191-203

  Matsuda, Yusuke ^a   Nakajima, Kensuke ^a   Tachibana, Masaaki ^a  

^a KWANSEI GAKUIN UNIVERSITY   (Japan)

Author keywords

CAMP; Carbonic anhydrase; CO2; HCO3 transport; Localization; Marine diatoms

Indexed keywords

ADENYLATE CYCLASE; CARBON DIOXIDE; CARBONATE DEHYDRATASE; CYCLIC AMP; RIBULOSEBISPHOSPHATE CARBOXYLASE; SEA WATER;

AMINO ACID SEQUENCE; CARBON CYCLE; CONFERENCE PAPER; DIATOM; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; PHOTOSYNTHESIS; PHYSIOLOGY; SIGNAL TRANSDUCTION; TRANSPORT AT THE CELLULAR LEVEL;

ADENYLATE CYCLASE; AMINO ACID SEQUENCE; BIOLOGICAL TRANSPORT; CARBON CYCLE; CARBON DIOXIDE; CARBONIC ANHYDRASES; CYCLIC AMP; DIATOMS; GENE EXPRESSION REGULATION; PHOTOSYNTHESIS; RIBULOSE-BISPHOSPHATE CARBOXYLASE; SEAWATER; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC;

BACILLARIOPHYTA; MAMMALIA; NITZSCHIA ALBA;

EID: 84855258411     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-011-9623-7     Document Type: Conference Paper

References (98)

1. 2-concentrating mechanisms in algae. Can J Bot 76:1052-1071
2. Beardall J, Mukerji D, Glover HE, Morris I (1976) The path of carbon in photosynthesis by marine phytoplankton. J Phycol 12: 409-417
3. Bowler C et al (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456:239-244
4. 2 concentration. Plant Cell Environ 23:1137-1144
5. Buck J, Sinclair ML, Schapal L, Cann MJ, Levin LR (1999) Cytosolic adenylyl cyclase defines a unique signaling molecule in mammals. Proc Natl Acad Sci USA 96:79-84
6. 2 concentrations. Limnol Oceanogr 46:1378-1391
7. Cann MJ, Hammer A, Zhou J, Kanacher T (2003) A defined subset of adenylyl cyclases is regulated by bicarbonate ion. J Biol Chem 278:35033-35038
8. Carré IA, Edmunds LN Jr (1993) Oscillator control of cell division in Euglena: Cyclic AMP oscillations mediate the phasing of the cell division cycle by the circadian clock. J Cell Sci 104:1163-1173
9. Chen Y, Cann MJ, Litvin TN, Iourgenko V, Sinclair ML, Levin LR, Buck J (2000) Soluble adenylyl cyclase as an evolutionarily conserved bicarbonate sensor. Science 289:625-628
10. 3- utilization in the marine diatom Phaeodactylum tricornutum. Plant Physiol 141:731-736
11. Coleman JR, Colman B (1981) Photosynthetic carbon assimilation in the blue-green alga Coccochloris peniosystis. Plant Cell Environ 4:285-290
12. Colman B, Rotatore C (1995) Photosynthetic inorganic carbon uptake and accumulation in two marine diatoms. Plant Cell Environ 18:919-924
13. Colman B, Rotatore C (1988) Uptake and accumulation of inorganic carbon by a freshwater diatom. J Exp Bot 39:1025-1032
14. Colman B, Huertus IE, Bhatti S, Dason JS (2002) The diversity of inorganic carbon acquisition mechanisms in eukaryotic microalgae. Funct Plant Biol 29:261-270
15. Dionisio-Sese ML, Fukuzawa H, Miyachi S (1990) Light-Induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol 94:1103-1110
16. 2. J Biol Chem 283:10377-10384
17. Falkowski PG, Barber RT, Smetacek V (1998) Biogeochemical controls and feedbacks on ocean primary production. Science 281:200-206
18. Falkowski P, Scholes RJ, Boyle E, Canadell J, Canfield D, Elser J, Gruber N, Hibbard K, Högbeg P, Linder S et al (2000) The global carbon cycle: A test of our knowledge of Earth as a system. Science 290:291-296
19. Falkowski PG, Katz ME, Knoll AH, Quigg A, Raven JA, Schofield O, Taylor FJR (2004) The evolution of modern eukaryotic phytoplankton. Science 305:354-360
20. Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary production of the biosphere: Integrating terrestrial and oceanic components. Science 281:237-240
21. 2 availability. Proc Natl Acad Sci USA 98:5347-5352
22. 2-requiring mutant ca-1. Plant Physiol 114:237-244
23. Gibbs SP (1981) The chloroplast endoplasmic reticulum: Structure, function and evolutionary significance. Int Rev Cytol 72:49-99
24. 2. Biochem J 396:215-218
25. Harada H, Matsuda Y (2005) Identification and characterization of a new carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Can J Bot 83:909-916
26. 2 and light in the marine diatom Phaeodactylum tricornutum. Plant Physiol 139:1041-1050
27. 2 sensing at ocean surface mediated by cAMP in a marine diatom. Plant Physiol 142:1318-1328
28. Holdsworth ES, Colbeck J (1976) The pattern of carbon fixation in the marine unicellular alga Phaeodactylum tricornutum. Mar Biol 38:189-199
29. Iglesias-Rodriguez MD, Merrett MJ (1997) Dissolved inorganic carbon utilization and the development of extracellular carbonic anhydrase by the marine diatom Phaeodactylum tricornutum. New Phytol 135:163-168
30. Iseki M, Matsunaga S, Murakami A, Ohno K, Shiga K, Yoshida K, Sugai M, Takahashi T, Hori T, Watanabe M (2002) A blue-lightactivated adenylyl cyclase mediates photoavoidance in Euglena gracilis. Nature 415:1047-1051
31. Johnston AM, Raven JA (1996) Inorganic carbon accumulation by the marine diatom Phaeodactylum tricornutum. Eur J Phycol 31: 285-290
32. Kanacher T, Schultz A, Linder JU, Schultz JE (2002) A GAFdomain- regulated adenylyl cyclase from Anabaena is a selfactivating cAMP switch. EMBO J 21:3672-3680
33. 2. EMBO J 17:1208-1216
34. Kitao Y, Harada H, Matsuda Y (2008) Localization and targeting mechanisms of two chloroplastic beta-carbonic anhydrases in the marine diatom Phaeodactylum tricornutum. Physiol Plant 133:68-77
35. Kitao Y, Matsuda Y (2009) Formation of macromolecular complexes of carbonic anhydrases in the chloroplast of a marine diatom by the action of the C-terminal helix. Biochem J 419:681-688
36. 2 sensing with cAMP signaling and virulence. Curr Biol 15:2021-2026
37. Kohinata T, Nishino H, Fukuzawa H (2008) Significance of zinc in a regulatory protein, CCM1, which regulates the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Cell Physiol 49:273-283
38. Korb RE, Saville PJ, Johnston AM, Raven JA (1997) Sources of inorganic carbon for photosynthesis by three species of marine diatom. J Phycol 33:433-440
39. Kroth PG et al (2008) A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis. PLoS One 3:e1426
40. 2 concentration in unicellular green algae. Can J Bot 69: 1062-1069
41. 2-responsive transcriptional regulation of CAH1 encoding carbonic anhydrase is mediated by enhancer and silencer regions in Chlamydomonas reinhardtii. Plant Physiol 121:1329-1337
42. 2- responsive transcriptional activation of Cah1 encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plnat Physiol 133:783-793
43. Lane TW, Morel FMM (2000) A biological function for cadmium in marine diatoms. Proc Natl Acad Sci USA 97:4627-4631
44. Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FMM (2005) A cadmium enzyme from marine diatom. Nature 435:42
45. Litchman E, Klausmeier CA, Yoshiyama K (2009) Contrasting size evolution in marine and freshwater diatoms. Proc Natl Acad Sci USA 106:2665-2670
46. Ludwig M, Gibbs SP (1985) DNA is present in the nucleomorph of cryptomonads: Further evidence that the chloroplast evolved from a eukaryotic endosymbiont. Protoplasma 127:9-20
47. 2 concentration in their environment. Plant Physiol 71:208-210
48. Masuda S, Ono TA (2005) Adenylyl cyclase activity of Cya1 from the cyanobacterium Synechocystis sp. srain PCC6803 inhibited by bicarbonate. J Bacteriol 187:5032-5035
49. 2 and bicarbonate transport in green alga Chlorella ellipsoidea. I Time course of induction of two systems. Plant Physiol 108:247-252
50. 2 concentration. Plant Physiol 108:253-260
51. 2 in the marine diatom Phaeodactylum tricornutum. Plant Cell Environ 24:611-620
52. Mayo WP, Williams TG, Birch DG, Turpin DH (1986) Photosynthetic adaptation by Synechococcus leopoliensis in response to exogenous dissolved inorganic carbon. Plant Physiol 80: 1038-1040
53. McFadden GI, Gilson P (1995) Something borrowed, something green: Lateral transfer of chloroplasts by secondary endosymbiosis. Trends Ecol Evol 10:12-17
54. McGinn PJ, Morel FMM (2008) Expression and inhibition of the carboxylating and decarboxylating enzymes in the photosynthetic C4 pathway of marine diatoms. Plant Physiol 146: 300-309
55. 3- transport by cyanobacteria: A review. Can J Bot 68:1291-1302
56. Mitchell C, Beardall J (1996) Inorganic carbon uptake by an Antarctic sea-ice diatom, Nitzschia frigida. Polar Biol 16:95-99
57. Mitra M, Lato SM, Ynalvez RA, Xiao Y, Moroney JV (2004) Identification of a new chloroplast carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol 135:173-182
58. Miura K, Kohinata T, Yoshioka S, Ohyama K, Fukuzawa H (2002) Regulation of a carbon concentrating mechanism through CCM1 in Chlamydomonas reinhardtii. Funct Plant Biol 29:211-219
59. 2-responsive genes regulated by CCM1 controlling a carbonconcentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol 135:1595-1607
60. Montsant A, Jabbari K, Maheswari U, Bowler C (2005) Comparative genomics of the pennate diatom Phaeodactylum tricornutum. Plant Physiol 137:500-513
61. Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D (2009) Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 324:1724-1726
62. 2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942. Mol Microbiol 68:98-109
63. 2-induced activation of the bicarbonate transporter operon in cyanobacteria. J Bacteriol 183:1891-1898
64. Patel BN, Merrett MJ (1986) Inorganic-carbon uptake by the marine diatom Phaeodactylum tricornutum. Planta 169:222-227
65. 2-concentrating-mechanism (CCM): Functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants. J Exp Bot 59:1441-1461
66. Pronina NA, Semenenko VE (1984) Localization of membrane-bound and soluble forms of carbonic anhydrase in the Chlorella cell. Fiziol Rast (Moscow) 31:241-251
67. Quarmby LM (1994) Signal transduction in the sexual life of Chlamydomonas. Plant Mol Biol 26:1271-1287
68. Raven JA (1994) Carbon fixation and carbon availability in marine phytoplankton. Photosynth Res 39:259-273
69. 2-concentrating mechanisms: A direct role for thylakoid lumen acidification? Plant Cell Environ 20:147-154
70. 2 in Chlamydomonas reinhardtii. Plant Physiol 109:937-944
71. Reinfelder JR, Kraepiel AML, Morel FMM (2000) Unicellular C4 photosynthesis in a marine diatom. Nature 407:996-999
72. Reinfelder JR, Milligan AJ, Morel FMM (2004) The role of the C4 pathway in carbon accumulation and fixation in a marine diatom. Plant Physiol 135:2106-2111
73. Roberts SB, Lane TW, Morel FMM (1997) Carbonic anhydrase in the marine diatom Thalassiosira weissflogii (Bacillariophyceae). J Phycol 33:845-850
74. Roberts K, Granum E, Leegood RC, Raven JA (2007) C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiol 145:230-235.
75. Rost B, Riebesell U, Burkhardt S, Sültemeyer D (2003) Carbon acquisition of bloom-forming marine phytoplankton. Limnol Oceanogr 48:55-67
76. 2 by the diatom Navicula pelliculosa. J Exp Bot 249:571-576
77. Rotatore C, Colman B, Kuzuma M (1995) The active uptake of carbon dioxide by the marine diatoms Phaeodactylum triconrutum and Cyclotella sp. Plant cell Environ 18:913-918
78. Satoh D, Hiraoka Y, Colman B, Matsuda Y (2001) Physiological and molecular biological characterization of intracellular carbonic anhydrase from the marine diatom Phaeodactylum tricornutum. Plant Pysiol 126:1459-1470
79. Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA (2006) The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two. J Biol Chem 281:7546-7547
80. So AK, Espie GS, Williams EB, Shively JM, Heinhorst S, Cannon GC (2004) A novel evolutionary lineage of carbonic anhydrase (e class) is a component of the carboxysome shell. J Bacteriol 186:623-630
81. Sültemeyer DF (1998) Carbonic anhydrase in eukaryotic algae: Characterization, regulation, and possible function during photosynthesis. Can J Bot 76:962-972
82. 2 transport. Can J Bot 69:995-1002
83. Tachibana M, Allen AE, Kikutani S, Endo Y, Bowler C, Matsuda Y (2011) Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana. Photosynth Res.
84. Tanaka Y, Nakatsuma D, Harada H, Ishida M, Matsuda Y (2005) Localization of soluble b-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae. Plant Physiol 138:207-217
85. 2 evolution during photosynthesis by marine microorganism. Curr Biol 7:723-728
86. Terauchi K, Ohmori M (2004) Blue light stimulates cyanobacterial motility via a cAMP signal transduction system. Mol Microbiol 52:303-309
87. Tréguer P, Nelson DM, Van Bennekom AJ, Demaster DJ, Leynaert A, Quéguiner B (1995) The silica balance in the world ocean: A reestimate. Science 268:375-379
88. Trimborn S, Lundholm N, Thomas S, Richter KU, Krock B, Hansen PJ, Rost B (2008) Inorganic carbon acquisition in potentially toxic and non-toxic diatoms: The effect of pHinduced changes in seawater carbonate chemistry. Physiol Plant 133:92-105
89. Tripp BC, Smith K, Ferry JG (2001) Carbonic anhydrase: New insights for an ancient enzyme. J Biol Chem 276:48615-48618
90. Van K, Spalding MH (1999) Periplasmic carbonic anhydrase structural gene (Cah1) mutant in Chlamydomonas reinhardtii. Plant Physiol 120:757-764
91. 2 regulates multiple acclimation states. Can J Bot 83:796-809
92. Wang HL, Postier BL, Burnap RL (2004) Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator. J Biol Chem 279:5739-5751
93. Wang Y, Sun Z, Horken KM, Im CS, Xiang Y, Grossman AR, Weeks DP (2005) Analyses of CIA5, the master regulator of the carbon-concentrating mechanism in Chlamydomonas reinhardtii, and its control of gene expression. Can J Bot 83: 765-779
94. 2-concentrating mechanism in a euryhaline, coastal marine cyanobacterium, Synechococcus sp. Strain PCC 7002: Role of NdhR/CcmR. J Bacteriol 189:3335-3347
95. Xiang Y, Zhang J, Weeks DP (2001) The Cia5 gene controls formation of the carbon concentrating mechanism in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 98: 5341-5346
96. Xu Y, Feng L, Jeffrey PD, Shi Y, Morel FMM (2008) Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms. Nature 452:56-61
97. Yamano T, Miura K, Fukuzawa H (2008) Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol 147:340-354
98. 2 dependent LCIB-LCIC complex localization in the chloroplast supports the carbonconcentrating mechanism in Chlamydomonas reinhardtii. Plant Cell Physiol 51:1453-1468