Erratum to Unbalanced charge distribution as a determinant for dependence of a subset of Escherichia coli membrane proteins on the membrane insertase YidC (mBio (2011) 2, 6, 10.1128/mBio.00238-11);Unbalanced charge distribution as a determinant for dependence of a subset of Escherichia coli membrane proteins on the membrane insertase YidC

mBio

Volumn 2, Issue 6, 2011, Pages

  Gray, Andrew N ^a,d   Henderson Frost, Josephine M ^b,e   Boyd, Dana ^a   Shirafi, Shirin ^b,f   Niki, Hironori ^c   Goldberg, Marcia B ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c NATIONAL INSTITUTE OF GENETICS   (Japan)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^f LINKÖPING UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; MEMBRANE PROTEIN; UNCLASSIFIED DRUG; YIDC PROTEIN;

ARTICLE; BACTERIAL MEMBRANE; CELL GROWTH; CELL ORGANELLE; CONTROLLED STUDY; CYTOPLASM VESICLE; ESCHERICHIA COLI; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; SIGNAL TRANSDUCTION;

ESCHERICHIA COLI;

EID: 84855239343     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00500-12     Document Type: Erratum

References (46)

1. Boyd D, Schierle C, Beckwith J. 1998. How many membrane proteins are there? Protein Sci. 7:201-205.
2. Xie K, Dalbey RE. 2008. Inserting proteins into the bacterial cytoplasmic membrane using the Sec and YidC translocases. Nat. Rev. Microbiol. 6:234-244.
3. Kol S, Nouwen N, Driessen AJ. 2008. Mechanisms of YidC-mediated insertion and assembly of multimeric membrane protein complexes. J. Biol. Chem. 283:31269-31273.
4. Yi L, Dalbey RE. 2005. Oxa1/Alb3/YidC system for insertion of membrane proteins in mitochondria, chloroplasts and bacteria (review). Mol. Membr. Biol. 22:101-111.
5. Facey SJ, Neugebauer SA, Krauss S, Kuhn A. 2007. The mechanosensi-tive channel protein MscL is targeted by the SRP to the novel YidC membrane insertion pathway of Escherichia coli. J. Mol. Biol. 365:995-1004.
6. Yi L, Celebi N, Chen M, Dalbey RE. 2004. Sec/SRP requirements and energetics of membrane insertion of subunits a, b, and c of the Escherichia coli F1F0 ATP synthase. J. Biol. Chem. 279:39260-39267.
7. Samuelson JC, et al. 2000. YidC mediates membrane protein insertion in bacteria. Nature 406:637-641.
8. van der Laan M, Bechtluft P, Kol S, Nouwen N, Driessen AJ. 2004. F1F0 ATP synthase subunit c is a substrate of the novel YidC pathway for membrane protein biogenesis. J. Cell Biol. 165:213-222.
9. Yen MR, Harley KT, Tseng YH, Saier MH. 2001. Phylogenetic and structural analyses of the oxa1 family of protein translocases. FEMS Mi-crobiol. Lett. 204:223-231.
10. Camp AH, Losick R. 2008. A novel pathway of intercellular signalling in Bacillus subtilis involves a protein with similarity to a component of type III secretion channels. Mol. Microbiol. 69:402-417.
11. Kuhn A, Stuart R, Henry R, Dalbey RE. 2003. The Alb3/Oxa1/YidC protein family: membrane-localized chaperones facilitating membrane protein insertion? Trends Cell Biol. 13:510-516.
12. Scotti PA, et al. 2000. YidC, the Escherichia coli homologue of mitochon-drial Oxa1p, is a component of the Sec translocase. EMBO J. 19:542-549.
13. Beck K, et al. 2001. YidC, an assembly site for polytopic Escherichia coli membrane proteins located in immediate proximity to the SecYE translo-con and lipids. EMBO Rep. 2:709-714.
14. Price CE, Driessen AJ. 2008. YidC is involved in the biogenesis of anaerobic respiratory complexes in the inner membrane of Escherichia coli. J. Biol. Chem. 283:26921-26927.
15. van der Laan M, et al. 2003. A conserved function of YidC in the biogenesis of respiratory chain complexes. Proc. Natl. Acad. Sci. U. S. A. 100: 5801-5806.
16. Wagner S, et al. 2008. Biogenesis of MalF and the MalFGK(2) maltose transport complex in Escherichia coli requires YidC. J. Biol. Chem. 283: 17881-17890.
17. Fröderberg L, et al. 2003. Versatility of inner membrane protein biogenesis in Escherichia coli. Mol. Microbiol. 47:1015-1027.
18. Nagamori S, Smirnova IN, Kaback HR. 2004. Role of YidC in folding of polytopic membrane proteins. J. Cell Biol. 165:53-62.
19. Price CE, et al. 2010. Differential effect of YidC depletion on the membrane proteome of Escherichia coli under aerobic and anaerobic growth conditions. Proteomics 10:3235-3247.
20. Wickström D, et al. 2011. Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE. J. Mol. Biol. 409:124-135.
21. Kitagawa M, et al. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299.
22. Käll L, Krogh A, Sonnhammer EL. 2004. A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338: 1027-1036.
23. Daley DO, et al. 2005. Global topology analysis of the Escherichia coli inner membrane proteome. Science 308:1321-1323.
24. Waldo GS, Standish BM, Berendzen J, Terwilliger TC. 1999. Rapid protein-folding assay using green fluorescent protein. Nat. Biotechnol. 17:691-695.
25. Yi L, et al. 2003. YidC is strictly required for membrane insertion of subunits a and c of the F(1)F(0)ATP synthase and SecE of the SecYEG translocase. Biochemistry 42:10537-10544.
26. Schnaitman CA. 1971. Solubilization of the cytoplasmic membrane of Escherichia coli by Triton X-100. J. Bacteriol. 108:545-552.
27. van Bloois E, et al. 2005. The Sec-independent function of Escherichia coli YidC is evolutionary-conserved and essential. J. Biol. Chem. 280: 12996-13003.
28. Schmidt KL, et al. 2004. A predicted ABC transporter, FtsEX, is needed for cell division in Escherichia coli. J. Bacteriol. 186:785-793.
29. Robichon C, Vidal-Ingigliardi D, Pugsley AP. 2005. Depletion of apoli-poprotein N-acyltransferase causes mislocalization of outer membrane lipoproteins in Escherichia coli. J. Biol. Chem. 280:974 -983.
30. Kruse T, Bork-Jensen J, Gerdes K. 2005. The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex. Mol. Microbiol. 55:78-89.
31. Baba T, et al. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006-2008.
32. Hashimoto M, et al. 2005. Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome. Mol. Microbiol. 55: 137-149.
33. Gerdes SY, et al. 2003. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J. Bacteriol. 185: 5673-5684.
34. Kyte J, Doolittle RF. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
35. Boyd D, Beckwith J. 1989. Positively charged amino acid residues can act as topogenic determinants in membrane proteins. Proc. Natl. Acad. Sci. U. S. A. 86:9446-9450.
36. von Heijne G. 1986. The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology. EMBO J. 5:3021-3027.
37. Viklund H, Elofsson A. 2008. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar. Bioinformatics 24:1662-1668.
38. Rapp M, Granseth E, Seppälä S, von Heijne G. 2006. Identification and evolution of dual-topology membrane proteins. Nat. Struct. Mol. Biol. 13:112-116.
39. Fontaine F, Fuchs RT, Storz G. 2011. Membrane localization of small proteins in Escherichia coli. J. Biol. Chem. 286:32464-32474.
40. Gafvelin G, von Heijne G. 1994. Topological "frustration" in multispan-ning E. coli inner membrane proteins. Cell 77:401-412.
41. von Heijne G. 2006. Membrane-protein topology. Nat. Rev. Mol. Cell Biol. 7:909-918.
42. Nouwen N, Driessen AJ. 2002. SecDFyajC forms a heterotetrameric complex with YidC. Mol. Microbiol. 44:1397-1405.
43. Van den Berg B, et al. 2004. X-ray structure of a protein-conducting channel. Nature 427:36-44.
44. Lotz M, Haase W, Kühlbrandt W, Collinson I. 2008. Projection structure of yidC: a conserved mediator of membrane protein assembly. J. Mol. Biol. 375:901-907.
45. Urbanus ML, et al. 2001. Sec-dependent membrane protein insertion: sequential interaction of nascent FtsQ with SecY and YidC. EMBO Rep. 2:524-529.
46. Price CE, Driessen AJ. 2010. Conserved negative charges in the trans-membrane segments of subunit K of the NADH: ubiquinone oxidoreduc-tase determine its dependence on YidC for membrane insertion. J. Biol. Chem. 285:3575-3581.