Delineation of Sclerotinia sclerotiorum pathotypes using differential resistance responses on Brassica napus and B. juncea genotypes enables identification of resistance to prevailing pathotypes

Field Crops Research

Volumn 127, Issue , 2012, Pages 248-258

  Ge, Xin Tian ^a   Li, Yu Pin ^a   Wan, Zhi Jian ^b   You, Ming Pei ^a   Finnegan, Patrick M ^a   Banga, Surinder S ^c   Sandhu, Prabhjot S ^c   Garg, Harsh ^c   Salisbury, Phillip A ^d,e   Barbetti, Martin J ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^b YUNNAN UNIVERSITY   (China)

^c PUNJAB AGRICULTURAL UNIVERSITY   (India)

^d UNIVERSITY OF MELBOURNE   (Australia)

^e DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

Author keywords

Brassica juncea; Brassica napus; Canola; Mustard; Oilseed rape; Pathotypes; Sclerotinia sclerotiorum; Sclerotinia stem rot; White mould

Indexed keywords

AGAR; CANOLA; CROP DAMAGE; CROP PLANT; CULTIVAR; DISEASE CONTROL; DISEASE INCIDENCE; DISEASE PREVALENCE; DISEASE RESISTANCE; EXPERIMENTAL STUDY; FUNGAL DISEASE; FUNGUS; GENOTYPE; HOST-PATHOGEN INTERACTION; LESION; PATHOGEN; PLANT BREEDING;

AUSTRALIA; WESTERN AUSTRALIA;

BRASSICA; BRASSICA JUNCEA; BRASSICA NAPUS; BRASSICA NAPUS VAR. NAPUS; FUNGI; SCLEROTINIA; SCLEROTINIA SCLEROTIORUM; SOLANUM TUBEROSUM;

EID: 84855215956     PISSN: 03784290     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fcr.2011.11.022     Document Type: Article

References (78)

1. Aggarwal R.A.K.K., Kumar A., Thakur H.L. Effect of Sclerotinia rot on oil quality in low erucic acid cultivars of rapeseed. Cruciferae Newslett. 1997, 19:103-104.
2. Andrew M., Kohn L.M. Single nucleotide polymorphism-based diagnostic system for crop-associated Sclerotinia species. Appl. Environ. Microbiol. 2009, 75:5600-5606.
3. AOF (Australian Oilseeds Federation) Quality of Australian canola 2009, pp. 10-28.
4. Atallah Z.K., Larget B., Chen X., Johnson D.A. High genetic diversity, phenotypic uniformity, and evidence of outcrossing in Sclerotinia sclerotiorum in the Columbia Basin of Washington State. Phytopathology 2004, 94:737-742.
5. Auclair J., Boland G.J., Kohn L.M., Rajcan I. Genetic interactions between Glycine max and Sclerotinia sclerotiorum using a straw inoculation method. Plant Dis. 2004, 88:891-895.
6. Barbetti M.J., Khangura R. Fungal diseases of canola in Western Australia 2000, Bull. 4406, Agric. West. Aust., p. 15.
7. Barbetti M.J., Li C.X., Garg H., Li H., Banga S.K., Banga S.S., Sandhu P.S., Singh R., Singh D., Liu S.Y., Gurung A.M., Salisbury P.A. Host resistance in oilseed Brassicas against Sclerotinia - renewed hope for managing a recalcitrant pathogen. Proc. Int. Rapeseed Cong. 2011, 713-715.
8. Bradley C.A., Henson R.A., Porter P.M., LeGare D.G., Del Rio L.E., Khot S.D. Response of canola cultivars to Sclerotinia sclerotiorum in controlled and field environments. Plant Dis. 2006, 90:215-219.
9. Buchwaldt L., Li R., Hegedus D.D., Rimmer S.R. Proc. 13th Int. Sclerotinia WS. Pathogenesis of Sclerotinia sclerotiorum in relation to screening for resistance. 2005, p. 22.
10. Carbone I., Kohn L.M. Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial population. Mol. Ecol. 2001, 10:2409-2422.
11. Chang S.W., Kim S.K. First report of sclerotinia rot caused by Sclerotinia sclerotiorum on some vegetable crops in Korea. Plant Pathol. J. 2003, 19:79-84.
12. Clarke K.R. Non-parametric multivariate analyses of changes in community structure. Aust. J. Ecol. 1993, 18:117-143.
13. Clarke K.R., Gorley R.N. PRIMER v6: User Manual/Tutorial 2006, PRIMER-E, Plymouth.
14. Clarkson J.P., Staveley J., Phelps K., Young C.S., Whipps J.M. Ascospore release and survival in Sclerotinia sclerotiorum. Mycol. Res. 2003, 107:213-222.
15. Cubeta M.A., Cody B.R., Kohli Y., Kohn L.M. Clonality in Sclertotinia sclerotiorum on infected cabbage in Eastern North Carolina. Phytopathology 1997, 87:1000-1004.
16. Delourme, R., Barbetti, M.J., Snowdon, R., Zhao, J., Manzanares-Dauleux, M., 2011. Genetics, Genomics and Breeding of Oilseed Brassicas. Chapter 14: Genetics and genomics of disease resistance. Edwards, D. (Ed.). Eur. J. Plant Pathol.
17. Dixon G.R. Vegetable Brassicas and related crucifers. Crop Production Science in Horticulture 2007, CAB International, ISBN 978051993959.
18. Durman S.B., Menendez A.B., Godeas A.M. Mycelial compatibility groups in Buenos Aires field populations of Sclerotinia sclerotiorum (Sclerotiniaceae). Aust. J. Bot. 2003, 51:421-427.
19. Ekins M.G., Aitken E.A.B., Goulter K.C. Aggressiveness among isolates of Sclerotinia sclerotiorum from sunflower. Australas. Plant Pathol. 2007, 36:580-586.
20. Falak I., McNabb W., Hacault K., Patel J. Field performance of Brassica napus L. spring canola hybrids with improved resistance to Sclerotinia stem rot. Proc Int. Rapeseed Congress 2011, pp. 622-626.
21. Garcιa-Arenal F., McDonald B.A. An analysis of the durability of resistance to plant viruses. Phytopathology 2003, 93:941-952.
22. Garg H., Sivasithamparam K., Banga S.S., Barbetti M.J. Cotyledon assay as a rapid and reliable method of screening for resistance against Sclerotinia sclerotiorum in Brassica napus genotypes. Australas. Plant Pathol. 2008, 37:106-111.
23. Garg H., Kohn L.M., Andrew M., Li H., Sivasithamparam K., Barbetti M.J. Pathogenicity of morphologically different isolates of Sclerotinia sclerotiorum with Brassica napus and B. juncea genotypes. Eur. J. Plant Pathol. 2010, 126:305-315.
24. Garg H., Li H., Sivasithamparam K., Kuo J., Barbetti M.J. The infection processes of Sclerotinia sclerotiorum in cotyledon tissue of a resistant and a susceptible genotype of Brassica napus. Ann. Bot. 2010, 106:897-908.
25. Garg H., Atri C., Sandhu P.S., Kaur B., Benton M., Banga S.K., Singh H., Singh C., Barbetti M.J., Banga S.S. High level of resistance of Sclerotinia Sclerotiorum in introgression lines derived from hybridization between wild crucifers and the crop Brassica species B. napus and B. juncea. Field Crops Res. 2010, 117:51-58.
26. Garrabrandt L.E., Johnston S.A., Peterson J.L. Tan sclerotia of Sclerotinia sclerotiorum from lettuce. Mycologia 1983, 75:451-456.
27. Goodwin S.B., Allard R.W., Webster R. A nomenclature for Rhynchosporium secalis pathotypes. Phytopathology 1990, 80:1330-1336.
28. Hambleton S., Walker C., Kohn L.M. Clonal lineages of Sclerotinia sclerotiorum previously known from other crops predominate in 1999-2000 samples from Ontario and Quebec soybean. Can. J. Plant Pathol. 2002, 24:309-315.
29. Hemmati R., Javan-Nikkhah M., Linde C.C. Population genetic structure of Sclerotinia sclerotiorum on canola in Iran. Eur. J. Plant Pathol. 2009, 125:617-628.
30. Hind-Lanoiselet T., Lewington F. Canola Concepts: Managing Sclerotinia. Report No. Agnote 490 2004, NSW Department of Primary Industries.
31. Howlett B.J., Ballinger D.J., Barbetti M.J. Canola in Australia: The First Thirty Years 1999, pp. 47-52.
32. Jurke C.J., Fernando W.D.G. The effects of plant architecture in canola on sclerotinia stem rot (Sclerotinia sclerotiorum) avoidance. Phytopathology 2002, 92:S40.
33. Kang I.S., Chahal S.S. Prevalence and incidence of white rot of rapeseed and mustard incited by Sclerotinia sclerotiorum in Punjab. Plant Dis. Res. 2000, 15:232-233.
34. Koch S., Dunker S., Kleinhenz B., Röhrig M., von Tiedemann A. A crop loss-related forecasting model for Sclerotinia stem rot in winter oilseed rape. Phytopathology 2007, 97:1186-1194.
35. Kohli Y., Kohn L.M. Random association among alleles in clonal populations of Sclerotinia sclerotiorum. Fungal Genet. Biol. 1998, 23:139-149.
36. Kohli Y., Morrall R.A.A., Anderson J.B., Kohn L.M. Local and trans-Canadian clonal distribution of Sclerotinia sclerotiorum on canola. Phytopathology 1992, 82:875-880.
37. Kohn L.M. The clonal dynamic in wild and agricultural plant-pathogen populations. Can. J. Bot. 1994, 73:S1231-S1240.
38. Kohn L.M., Stasovski E., Carbone I., Royer J., Anderson J.B. Mycelial incompatibility and molecular markers in identify genetic variability in field population of Sclerotinia sclerotiorum. Phytopathology 1991, 81:480-485.
39. Kull L.S., Vuong T.D., Powers K.S., Eskridge K.M., Steadman J.R., Hartman G.L. Evaluation of resistance screening methods for Sclerotinia stem rot of soybean and dry bean. Plant Dis. 2003, 87:1471-1476.
40. Kutcher H.R., Turkington T.K., Clayton G. Effect of lodging resistance and apetalous canola cultivars on sclerotinia stem rot incidence and seed yield. Can. J. Plant Pathol. 2001, 23:323-324.
41. Lazarovits G., Starratt A.N., Huang H.C. The effect of tricyclazole and culture medium on production of the melanin precursor 1,8-dihydroxynaphthalene by Sclerotinia sclerotiorum isolate SS7. Pestic. Biochem. Physiol. 2000, 67:54-62.
42. Li Y.C., Chen J., Bennett R., Kiddle G., Wallsgrove R., Huang Y.J., He Y.H. Breeding, inheritance, and biochemical studies on Brassica napus cv. Zhougyou 821: tolerance to Sclerotinia sclerotiorum (stem rot). Proc. 10th Int. Rapeseed Cong 1999, p. 61.
43. Li G.Q., Huang H.C., Laroche A., Acharaya S.N. Occurrence and characterization of hypovirulence in the tan sclerotial isolates of S10 of Sclerotinia sclerotiorum. Mycol. Res. 2003, 107:1350-1360.
44. Li C.X., Li H., Sivasithamparam K., Fu T.D., Li Y.C., Liu S.Y., Barbetti M.J. Expression of field resistance under Western Australian conditions to Sclerotinia sclerotiorum in Chinese and Australian Brassica napus and Brassica juncea germplasm and its relation with stem diameter. Aust. J. Agric. Res. 2006, 57:1131-1135.
45. Li C.X., Li H., Siddique A.B., Sivasithamparam K., Salisbury P., Banga S.S., Shashi Banga, Chattopadhyay C., Kumar A., Singh R., Singh D., Agnihotri A., Liu S.Y., Li Y.C., Tu J., Fu T.D., Wang Y.F., Barbetti M.J. The importance of the type and time of inoculation and assessment in the determination of resistance in Brassica napus and B. juncea to Sclerotinia sclerotiorum. Aust. J. Agric. Res. 2007, 58:1198-1203.
46. Li C.X., Liu S.Y., Sivasithamparam K., Barbetti M.J. New sources of resistance to Sclerotinia stem rot caused by Sclerotinia sclerotiorum in Chinese and Australian Brassica napus and Brassica juncea germplasm screened under Western Australian conditions. Australas. Plant Pathol. 2008, 38:149-152.
47. Maltby A.D., Mihail J.D. Competition among Sclerotinia sclerotiorum genotypes within canola stems. Can. J. Bot. 1997, 75:462-468.
48. Malvarez G., Carbone I., Grunwald N.J., Subbarao K.V., Schafer M., Kohn L.M. New populations of Sclerotinia sclerotiorum from lettuce in California and peas and lentils in Washington. Phytopathology 2007, 97:470-483.
49. McCartney H.A., Cacey M.E., Li Q., Heran A. Airborne ascospores concentration and the infection of oilseed rape and sunflower by S. sclerotiorum. Proc 10th Int. Rapeseed Congress 1999.
50. McDonald B.A., Linde C. Pathogen population genetics, evolutionary potential, and durable resistance. Ann. Rev. Phytopathol. 2002, 40:349-379.
51. Melzer M.S., Boland G.J. Transmissible hypovirulence in Sclerotinia minor. Can. J. Plant Pathol. 1996, 18:19-28.
52. Morrall R.A.A., Duczek L.J., Sheard J.W. Variation and correlations within and between morphology, pathogenicity, and pectolytic enzyme activity in Sclerotinia from Saskatchewan. Can. J. Bot. 1972, 50:767-786.
53. Pathak A.K., Godika S., Jain J.P., Muralia S. Screening of Brassica genotypes against stem rot disease of mustard caused by Sclerotinia sclerotiorum (Lib.) de Bary. J. Mycol. Plant Pathol. 2002, 32:111-112.
54. Pratt R.G., Rowe D.E. Differential responses of alfalfa genotypes to stem inoculations with Sclerotinia sclerotiorum and S. trifoliorum. Plant Dis. 1991, 75:188-191.
55. Pratt R.G., Rowe D.E. Comparative pathogenicity of isolates of Sclerotinia trifoliorum and S. sclerotiorum on alfalfa cultivars. Plant Dis. 1995, 79:474-477.
56. Purdy L.H. Sclerotinia sclerotiorum: history, diseases and symptomatology, host range, geographic distribution and impact. Phytopathology 1979, 69:875-880.
57. Rai J.N., Dhawan S. Studies on purification and identification of toxic metabolites produced by Sclerotinia sclerotiorum causing white rot of crucifers. Indian Phytopathol. 1976, 29:407.
58. Riddle G.E., Burpee L.L., Boland G.J. Virulence of Sclerotinia sclerotiorum and S. minor on dandelion (Taraxacum officinale). Weed Sci. 1991, 39:109-118.
59. Saharan G.S., Mehta N. Sclerotinia Diseases of Crop plants: Biology, Ecology and Disease Management 2008, Springer.
60. Sanogo S., Puppala N. Characterization of darkly pigmented mycelial isolates of Sclerotinia sclerotiorum on Valencia peanut in New Mexico. Plant Dis. 2007, 91:1077-1082.
61. Sexton A.C., Howlett B.J. microsatellite markers reveal genetic differentiation among populations of Sclerotinia sclerotiorum from Australian canola fields. Curr. Genet. 2004, 46:357-365.
62. Sexton A.C., Whitten A.R., Howlett B.J. Population structure of Sclerotinia sclerotiorum in an Australian canola field at flowering and stem-infection stages of the disease cycle. Genome 2006, 49:1408-1415.
63. Shindrova P. New nomenclature of downy mildew races in sunflower (Plasmopara halstedii Farl. Berlese et de Toni) in Bulgaria (race composition during 2000-2003). Helia 2005, 28:57-64.
64. Shivpuri A., Sharma O.P., Jhamaria S.L. Fungitoxic properties of plant extracts against pathogenic fungi. Indian J. Mycol. Plant Pathol. 1997, 1:29-31.
65. Singh D. Scope of medicinal and aromatic plants in pest management. Proc. Int. Symp. Allelopathy in Sustainable Agriculture, Forestry and Environment 1994, p. 68.
66. Singh D., Singh R., Salisbury P., Barbetti M.J. Genetic diversity in Australian, Indian and Chinese oilseed Brassica germplasm against sclerotinia-rot resistance. Proc. Int. Rapeseed Cong 2011, pp. 665-669.
67. Sun J.M., Irzykowski W., Jedryczka M., Han F.X. Analysis of the genetic structure of Sclerotinia sclerotiorum (Lib.) de Bary populations from different regions and host plants by random amplified polymorphic DNA markers. J. Integr. Plant Biol. 2005, 47:385-395.
68. Tiedemann A., Siebold M., Knüfer J., Wulf T., Koopmann B. Disease control in oilseed rape - future challenges through high intensity production and climate change. Proc. Int. Rapeseed Cong 2011, pp. 5-6.
69. Thomson J.R., Thomas P.M., Evans I.R. Efficacy of aerial application of benomyl and iprodione for the control of sclerotinia stem rot of canola (rapeseed) in central Alberta. Can. J. Plant Pathol. 1984, 6:75-77.
70. Tourvieille D., Gulya T., Maširevic S., Penaud A., Rashid K., Viranyi F. Proc. 15th Int. Sunflower Conf. New nomenclature of races of Plasmopara halstedii (sunflower downy mildew). 2000, pp. 161-166.
71. Volovik V., Razgulayeva N. Breeding of winter rapeseed in the central European Russia. Proc. Int. Rapeseed Cong 2011, 5-6.
72. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols. A Guide to Methods and Applications 1990, Academic Press, San Diego, USA, pp. 315-322. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
73. Willets H.J., Wong J.A.L. The biology of Sclerotinia sclerotiorum, Sclerotinia trifoliorum and Sclerotinia minor with emphasis on specific nomenclature. Bot. Rev. 1980, 46:101-165.
74. You M.P., Barbetti M.J., Sivasithamparam K. Characterization of Phytophthora clandestina races on Trifolium subterraneum in Western Australia. Eur. J. Plant Pathol. 2005, 113:267-274.
75. Zhang J., Qi C., Pu H., Chen S., Chen F. Genetic map construction and Sclerotinia resistance QTLs identification in rapeseed (Brassica napus L.). Proc. Int. Rapeseed Cong 2011, pp. 673-676.
76. Zhao J., Peltier A.J., Meng J., Osborn T.C., Grau C.R. Evaluation of Sclerotinia stem rot resistance in oilseed Brassica napus using a petiole inoculation technique under greenhouse conditions. Plant Dis. 2004, 88:1033-1039.
77. Zhou L.C., Yu Q., Liu S.Y., Zhou B.W. Evaluation of Sclerotinia resistance in rapeseed. Chin. Oilseed Crop 1994, 4:69-72.
78. Ziman L., Jedryczka M., Srobarova A. Relationship between morphological and biochemical characteristics of Sclerotinia sclerotiorum isolates and their aggressivity. J. Plant Dis. Protect. 1998, 105:283-288.