Single nucleotide polymorphism-based diagnostic system for crop-associated Sclerotinia species

Applied and Environmental Microbiology

Volumn 75, Issue 17, 2009, Pages 5600-5606

  Andrew, Marion ^a   Kohn, Linda M ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BOTRYTIS CINEREA; DIAGNOSTIC SYSTEMS; DIAGNOSTIC TESTS; GENOMIC DNA; HIGH-THROUGHPUT; MOLECULAR DIAGNOSTICS; NEGATIVE CONTROL; OLIGONUCLEOTIDE PROBES; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; S. SCLEROTIORUM; SINGLE NUCLEOTIDE POLYMORPHISMS; SINGLE NUCLEOTIDES; SOUTHERN HYBRIDIZATION; SPECIES IDENTIFICATION;

NUCLEIC ACIDS; OLIGONUCLEOTIDES; PROBES;

POLYMORPHISM;

CALMODULIN; GENOMIC DNA; OLIGONUCLEOTIDE; RIBOSOME DNA;

ACCURACY ASSESSMENT; BIOASSAY; DNA; FUNGUS; HYBRIDIZATION; IDENTIFICATION METHOD; MOLECULAR ANALYSIS; POLYMORPHISM;

ACCURACY; ARTICLE; BOTRYTIS CINEREA; CLINICAL EVALUATION; CONTROLLED STUDY; CROP; DIAGNOSTIC TEST; DNA HYBRIDIZATION; GENE LOCUS; GENE PROBE; HOST; NONHUMAN; NUCLEOTIDE SEQUENCE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SCLEROTINIA MINOR; SCLEROTINIA SCLEROTIORUM; SCLEROTINIA TRIFOLIORUM; SCLEROTIUM (ASCOMYCOTA); SCREENING; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENTIATION; SPECIES IDENTIFICATION;

ASCOMYCOTA; BLOTTING, SOUTHERN; CALMODULIN; CROPS, AGRICULTURAL; DNA FINGERPRINTING; DNA, FUNGAL; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE PROBES; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; TIME FACTORS;

BOTRYOTINIA FUCKELIANA; SCLEROTINIA; SCLEROTINIA MINOR; SCLEROTINIA SCLEROTIORUM; SCLEROTINIA TRIFOLIORUM;

EID: 69449088820     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02761-08     Document Type: Article

References (17)

1. Boland, G. J., and R. Hall. 1994. Index of plant hosts of Sclerotinia sclerotiorum. Can. J. Plant Pathol. 16:93-108.
2. Carbone, I. 2000. Population history and process: nested clade and coalescent analysis of multiple gene genealogies in a parasite of agricultural and wild plants. Ph.D. thesis. University of Toronto, Toronto, Canada.
3. Ekins, M. G., E. A. B. Aitken, and K. C. Goulter. 2005. Identification of Sclerotinia species. Aust. Plant Pathol. 34:549-555.
4. Free, S. J., P. W. Rice, and R. L. Metzenberg. 1979. Arrangement of the genes coding for ribosomal ribonucleic acids in Neurospora crassa. J. Bacteriol. 137:1219-1226.
5. Graf, F., and T. Schumacher. 1995. Sclerotinia glacialis sp. nov., from the alpine zone of Switzerland. Mycol. Res. 99:113-117.
6. Holst-Jensen, A., and T. Schumacher. 1994. Sclerotiniaceous species on Rubus chamaemorus: morphoanatomical and RFLP studies. Mycol. Res. 98:923-930.
7. Holst-Jensen, A., M. Vaage, and T. Schumacher. 1998. An approximation to the phylogeny of Sclerotinia and related genera. Nordic J. Bot. 18:705-719.
8. Kohn, L. M. 1979. A monographic revision of the genus Sclerotinia. Mycotaxon 9:365-444.
9. Kohn, L. M. 1979. Delimitation of the economically important plant pathogenic Sclerotinia species. Phytopathology 69:881-886.
10. Kohn, L. M., D. M. Petsche, S. R. Bailey, L. A. Novak, and J. B. Anderson. 1988. Restriction fragment length polymorphism in nuclear and mitochondrial DNA of Sclerotinia species. Phytopathology 78:1047-1051.
11. Melzer, M. S., E. A. Smith, and G. J. Boland. 1997. Index of plant hosts of Sclerotinia minor. Can. J. Plant Pathol. 19:272-280.
12. Petersen, G. R., G. M. Russo, and J. L. Van Etten. 1982. Identification of major proteins in sclerotia of Sclerotinia minor and Sclerotinia trifoliorum. Exp. Mycol. 6:268-273.
13. Rozen, S., and H. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132:365-386.
14. Uhm, J. Y., and H. Fujii. 1986. Course of meiosis in Sclerotinia sclerotiorum and related species. Trans. Mycol. Soc. Jpn. 27:129-142.
15. Willetts, H. J., and J. A.-L. Wong. 1980. The biology of Sclerotinia sclerotiorum, S. trifoliorum, and S. minor with emphasis on specific nomenclature. Bot. Rev. 46:101-165.
16. Winton, L. M., R. H. Leiner, and A. L. Krohn. 2006. Genetic diversity of Sclerotinia species from Alaskan vegetable crops. Can. J. Plant Pathol. 28:426-434.
17. Wu, Y. S., and C. G. Wang. 1983. Sclerotinia asari Wu and Wang: a new species of Sclerotiniaceae. Acta Phytopathol. Sin. 13:9-14.