Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation

Molecular Ecology

Volumn 10, Issue 10, 2001, Pages 2409-2422

  Carbone, I ^a   Kohn, L M ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Fungi; Genome size; IGS; Microsatellite expansion; Recombination block; Sclerotinia

Indexed keywords

DNA FINGERPRINTING; ELONGATION FACTOR 1ALPHA; GENETIC COMPATIBILITY; GENETIC DIVERGENCE; GENETIC RECOMBINATION; HAPLOTYPE; INTERGENIC SPACER; MICROBIAL POPULATION DYNAMICS; MOLECULAR ECOLOGY; NORWAY; POPULATION STRUCTURE;

ASCOMYCOTA; DNA FINGERPRINTING; HAPLOTYPES; MICROSATELLITE REPEATS; NORWAY; PHYLOGENY; RANUNCULACEAE; VARIATION (GENETICS);

FICARIA; FUNGI; PROKARYOTA; RANUNCULUS FICARIA; RANUNCULUS UNCINATUS; SCLEROTINIA; SCLEROTINIA SCLEROTIORUM;

EID: 0034763893     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.0962-1083.2001.01380.x     Document Type: Article

References (37)

1. Ecological genetics of metapopulations: The Silene-Ustilago plant-pathogen system
2. Variation in short tandem repeats is deeply structured by genetic background on the human Y chromosome
3. The structure of pathogen populations in natural plant communities
4. Temporal and spatial changes in a metapopulation of the rust pathogen Triphragmium ulmariae and its host, Filipendula ulmaria
5. A method for designing primer sets for speciation studies in filamentous ascomycetes
6. A microbial population-species interface: Nested cladistic and coalescent inference with multilocus data
7. Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies
8. Epidemiology of anther-smut disease (Microbotryum violaceum) and numeric regulation of populations of Silene dioica
9. Clonal spread of Sclerotium cepivorum in onion production with evidence of past recombination events
10. Evolution of drug resistance in experimental populations of Candida albicans
11. Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences
12. Statistical approaches to detecting recombination
13. Ribosomal DNA evolution at the population level: Nucleotide variation in intergenic spacer arrays of Daphnia pulex
14. Spatial and temporal dynamics of epidemics of the rust fungus Uromyces valerianae on populations of its host Valeriana salina
15. Testing significance of incongruencies
16. Numerical methods for inferring evolutionary trees
17. Expansion and length-dependent fragility of CTG repeats in yeast
18. Extraordinary ribosomal spacer length heterogeneity in a neotyphodium endophyte hybrid: Implications for concerted evolution
19. The structure and interrelationship of fungal populations in native and cultivated soils
20. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
21. Combining data in phylogenetic analysis
22. Clonal dispersal and spatial mixing in populations of the plant pathogenic fungus, Sclerotinia sclerotiorum
23. The clonal dynamic in wild and agricultural plant-pathogen populations
24. Mycelial incompatibility and molecular markers identify genetic variability in field populations of Sclerotinia sclerotiorum
25. Activated levels of rRNA synthesis in fission yeast are driven by an intergenic rDNA region positioned over 2500 nucleotides upstream of the initiation site
26. Dispersal of fungal diaspores
27. Ribosomal genes of Neurospora crassa: Constancy of gene number in the conidial and mycelial phases, and homogeneity in length and restriction enzyme cleavage sites within strains
28. 2 and the problem of small samples
29. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
30. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
31. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
32. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
33. Recombinational and mutational hotspots within the human lipoprotein lipase gene
34. Cladistic structure within the human lipoprotein lipase gene and its implications for phenotypic association studies