Population genetic structure of Sclerotinia sclerotiorum on canola in Iran

European Journal of Plant Pathology

Volumn 125, Issue 4, 2009, Pages 617-628

  Hemmati, Roghayeh ^a   Javan Nikkhah, Mohammad ^a   Linde, Celeste C ^b  

^a UNIVERSITY OF TEHRAN   (Iran)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

Evolutionary potential; Linkage disequilibrium; Microsatellite loci; Population structure

Indexed keywords

CANOLA; EVOLUTIONARY BIOLOGY; FUNGAL DISEASE; GENETIC MARKER; GENETIC STRUCTURE; HOST-PATHOGEN INTERACTION; OUTCROSSING; POPULATION STRUCTURE;

ASIA; EURASIA; IRAN; MIDDLE EAST;

BRASSICA NAPUS; BRASSICA NAPUS VAR. NAPUS; SCLEROTINIA SCLEROTIORUM;

EID: 70350733820     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-009-9510-7     Document Type: Article

References (54)

1. Abawi, G. S., & Grogan, R. G. (1979). Epidemiology of diseases caused by Sclerotinia species. Phytopathology, 69, 899-904. doi:10.1094/Phyto-69-899.
2. Afshari-Azad, H. (2001). Important diseases of oilseed rape. Tehran: Agricultural Research and Education Organization (AREO).
3. Agapow, P.-M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1, 101-102. doi:10.1046/j.1471-8278.2000.00014.x.
4. Atallah, Z. K., Larget, B., Chen, X., & Johnson, D. A. (2004). High genetic diversity, phenotypic uniformity, and evidence of outcrossing in Sclerotinia sclerotiorum in the Columbia Basin of Washington State. Phytopathology, 94, 737-742. doi:10.1094/PHYTO.2004.94.7.737.
5. Boland, G. J., & Hall, R. (1994). Index of plant hosts of Sclerotinia sclerotiorum. Canadian Journal of Plant Pathology, 16, 93-108.
6. Bourdôt, G. W., Hurrell, G. A., Saville, D. J., & de Jong, M. D. (2001). Risk analysis of Sclerotinia sclerotiorum for biological control of Cirsium arvense in pasture: ascospore dispersal. Biocontrol Science and Technology, 11, 119-139. doi:10.1080/09583150020029808.
7. Bradley, C. A., Henson, R. A., Porter, P. M., LeGare, D. G., del Río, L. E., & Khot, S. D. (2006). Response of canola cultivars to Sclerotinia sclerotiorum in controlled and field environments. Plant Disease, 90, 215-219. doi:10.1094/PD-90-0215.
8. Brown, A. H. D., Feldman, M. W., & Nevo, E. (1980). Multilocus structure of natural populations of Hordeum spontaneum. Genetics, 96, 523-536.
9. Burt, A., Carter, D. A., Koenig, G. L., White, T. J., & Taylor, J. W. (1996). Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis. Proceedings of the National Academy of Sciences of the United States of America, 93, 770-773. doi:10.1073/pnas.93.2.770.
10. Carbone, I., & Kohn, L. M. (2001). Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation. Molecular Ecology, 10, 2409-2422. doi:10.1046/j.0962-1083.2001.01380.x.
11. Carbone, I., Anderson, J. B., & Kohn, L. M. (1999). Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies. Evolution; International Journal of Organic Evolution, 53, 11-21. doi:10.2307/2640916.
12. Chen, Y., & Wang, D. (2005). Two convenient methods to evaluate soybean for resistance to Sclerotinia sclerotiorum. Plant Disease, 89, 1268-1272. doi:10.1094/PD-89-1268.
13. Chen, R.-S., Boeger, J. M., & McDonald, B. A. (1994). Genetic stability in a population of a plant pathogenic fungus over time. Molecular Ecology, 3, 209-218. doi:10.1111/j.1365-294X.1994.tb00054.x.
14. Coletta-Filho, H. D., & Machado, M. A. (2002). Evaluation of the genetic structure of Xylella fastidiosa populations from different Citrus sinensis varieties. Applied and Environmental Microbiology, 68, 3731-3736. doi:10.1128/AEM.68.8.3731-3736.2002.
15. Cubeta, M. A., Cody, B. R., Kohli, Y., & Kohn, L. M. (1997). Clonality in Sclerotinia sclerotiorum on infected cabbage in eastern North Carolina. Phytopathology, 87, 1000-1004. doi:10.1094/PHYTO.1997.87.10.1000.
16. Dalili, A., Forutan, A., & Barari, H. (2002). Evaluation of 81 lines and cultivars of canola to Sclerotinia stem rot of rapeseed in Mazandaran. (Paper presented at the 15th Iranian Plant protection Congress, Kermanshah).
17. Ekins, M., Aitken, E. A., & Coulter, K. C. (2006). Homothallism in Sclerotinia minor. Mycological Research, 110, 1193-1199. doi:10.1016/j.mycres.2006.07.014.
18. Estabrook, G. F., & Landrum, L. (1975). A simple test for the possible simultaneous evolutionary divergence of two amino acid positions. Taxon, 24, 609-613. doi:10.2307/1220730.
19. Falush, D., Stephens, M., & Pritchard, J. K. (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
20. Falush, D., Stephens, M., & Pritchard, J. K. (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes, 7, 574-578. doi:10.1111/j.1471-8286.2007.01758.x.
21. Fernando, W. G. D., Ghanbarnia, K., & Salati, M. (2007). First report on the presence of Phoma blackleg pathogenicity group 1 (Leptosphaeria biglobosa) on Brassica napus (canola/rapeseed) in Iran. Plant Disease, 91, 465. doi:10.1094/PDIS-91-4-0465A. (Abstract).
22. García-Arenal, F., & McDonald, B. A. (2003). An analysis of the durability of resistance to plant viruses. Phytopathology, 93, 941-952. doi:10.1094/PHYTO.2003.93.8.941.
23. Grünwald, N. J., Goodwin, S. B., Milgroom, M. G., & Fry, W. E. (2003). Analysis of genotypic diversity data for populations of microorganisms. Phytopathology, 93, 738-746. doi:10.1094/PHYTO.2003.93.6.738.
24. Hambleton, S., Walker, C., & Kohn, L. M. (2002). Clonal lineages of Sclerotinia sclerotiorum previously known from other crops predominate in 1999-2000 from Ontario and Quebec soybean. Canadian Journal of Plant Pathology, 24, 309-315.
25. Hoffman, D. D., Diers, B. W., Hartman, G. L., Nickell, C. D., Nelson, R. L., Pedersen, W. L., et al. (2002). Selected soybean plant introductions with partial resistance to Sclerotinia sclerotiorum. Plant Disease, 86, 971-980. doi:10.1094/PDIS.2002.86.9.971.
26. Kohli, Y., & Kohn, L. M. (1998). Random association among alleles in clonal populations of Sclerotinia sclerotiorum. Fungal Genetics and Biology, 23, 139-149. doi:10.1006/fgbi.1997.1026.
27. Kohli, Y., Morrall, R. A. A., Anderson, J. B., & Kohn, L. M. (1992). Local and trans- Canadian clonal distribution of Sclerotinia sclerotiorum on canola. Phytopathology, 82, 875-880. doi:10.1094/Phyto-82-875.
28. Kohn, L. M., Schaffer, M. R., Anderson, J. B., & Grünwald, N. J. (2008). Marker stability throughout 400 days of in vitro hyphal growth in the filamentous ascomycete, Sclerotinia sclerotiorum. Fungal Genetics and Biology, 45, 613-617. doi:10.1016/j.fgb.2007.09.013.
29. Kull, L. S., Pedersen, W. L., Palmquist, D., & Hartman, G. L. (2004). Mycelial compatibility grouping and aggressiveness of Sclerotinia sclerotiorum. Plant Disease, 88, 325-332. doi:10.1094/PDIS.2004.88.4.325.
30. Lefol, C., Séguin-Swartz, G., & Morrall, R. A. A. (1997). Resistance to Sclerotinia sclerotiorum in a weed related to canola. Canadian Journal of Plant Pathology, 19, 113. (Abstract).
31. Liu, D., Coloe, S., Baird, R., & Pedersen, J. (2000). Rapid mini-preparation of fungal DNA for PCR. Journal of Clinical Microbiology, 38, 471.
32. Ludwig, J. A., & Reynolds, J. F. (1988). Statistical ecology: A primer on methods and computing. New York: Wiley.
33. Malvárez, G., Carbone, I., Grünwald, N. J., Subbarao, K. V., Schafer, M., & Kohn, L. M. (2007). New populations of Sclerotinia sclerotiorum from lettuce in California and peas and lentils in Washington. Phytopathology, 97, 470-483. doi:10.1094/PHYTO-97-4-0470.
34. McDonald, B. A., & Linde, C. (2002). The population genetics of plant pathogens and breeding strategies for durable resistance. Euphytica, 124, 163-180. doi:10.1023/A:1015678432355.
35. Mert-Türk, F., Ipek, M., Mermer, D., & Nicholson, P. (2007). Microsatellite and morphological markers reveal genetic variation within a population of Sclerotinia sclerotiorum from oilseed rape in the Çanakkale Province of Turkey. Journal of Phytopathology, 155, 182-187. doi:10.1111/j.1439-0434.2007.01223.x.
36. Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
37. Pakdaman, B. S., & Mohammadi Goltapeh, E. (2007). In vitro studies on the integrated control of rapeseed white stem rot disease through the application of herbicides and Trichoderma species. Pakistan Journal of Biological Sciences, 10, 7-12. doi:10.3923/pjbs.2007.7.12.
38. Peakall, R., & Smouse, P. E. (2006). GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295. doi:10.1111/j.1471-8286.2005.01155.x.
39. Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
40. Purdy, L. H. (1979). Sclerotinia sclerotiorum: history, diseases and symptomatology, host range, geographic distribution, and impact. Phytopathology, 69, 875-880. doi:10.1094/Phyto-69-875.
41. Rönicke, S., Hahn, V., Vogler, A., & Friedt, W. (2005). Quantitative trait loci analysis of resistance to Sclerotinia sclerotiorum in sunflower. Phytopathology, 95, 834-839. doi:10.1094/PHYTO-95-0834.
42. Sexton, A. C., & Howlett, B. J. (2004). Microsatellite markers reveal genetic differentiation among populations of Sclerotinia sclerotiorum from Australian canola fields. Current Genetics, 46, 357-365. doi:10.1007/s00294-004-0543-3.
43. Sexton, A. C., Whitten, A. R., & Howlett, B. J. (2006). Population structure of Sclerotinia sclerotiorum in an Australian canola field at flowering and stem-infection stages of the disease cycle. Genome, 49, 1408-1415. doi:10.1139/G06-101.
44. Shannon, C. E., & Weaver, W. (1949). The mathematical theory of communication. Urbana: University of Illinois Press.
45. Sirjusingh, C., & Kohn, L. M. (2001). Characterization of microsatellites in the fungal plant pathogen, Sclerotinia sclerotiorum. Molecular Ecology Notes, 1, 267-269. doi:10.1046/j.1471-8278.2001.00102.x.
46. Stoddart, J. A., & Taylor, J. F. (1988). Genotypic diversity: estimation and prediction in samples. Genetics, 118, 705-711.
47. Sun, J.-M., Irzykowski, W., Jedryczka, M., & Han, F.-X. (2005). Analysis of the genetic structure of Sclerotinia sclerotiorum (Lib.) de Bary populations from different regions and host plants by random amplified polymorphic DNA markers. Journal of Integrative Plant Biology, 47, 385-395. doi:10.1111/j.1744-7909.2005.00077.x.
48. Wegulo, S. N., Yang, X. B., & Martinson, C. A. (1998). Soybean cultivar responses to Sclerotinia sclerotiorum in field and controlled environment studies. Plant Disease, 82, 1264-1270. doi:10.1094/PDIS.1998.82.11.1264.
49. Yanar, Y., & Miller, S. A. (2003). Resistance of pepper cultivars and accessions of Capsicum spp. to Sclerotinia sclerotiorum. Plant Disease, 87, 303-307. doi:10.1094/PDIS.2003.87.3.303.
50. Yeh, F. C., Yang, R. C., Boyle, T. B. J., Ye, Z. H., & Mao, J. X. (1999). POPGENE 3.2, the user-friendly shareware for population genetic analysis. Molecular biology and biotechnology centre. Edmonton: Univ. of Alberta.
51. Zhan, J., Kema, G. H. J., Waalwijk, C., & McDonald, B. A. (2002). Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents. Fungal Genetics and Biology, 36, 128-136. doi:10.1016/S1087-1845(02)00013-0.
52. Zhao, J., & Meng, J. (2003). Genetic analysis of loci associated with partial resistance to Sclerotinia sclerotiorum in rapeseed (Brassica napus L.). Theoretical and Applied Genetics, 106, 759-764.
53. Zhao, J., Peltier, A. J., Meng, J., Osborn, T. C., & Grau, C. R. (2004). Evaluation of Sclerotinia stem rot resistance in oilseed Brassica napus using a petiole inoculation technique under greenhouse conditions. Plant Disease, 88, 1033-1039. doi:10.1094/PDIS.2004.88.9.1033.
54. Zhao, J., Udall, J. A., Quijada, P. A., Grau, C. R., Meng, J., & Osborn, T. C. (2006). Quantitative trait loci for resistance to Sclerotinia sclerotiorum and its association with a homeologous non-reciprocal transposition in Brassica napus L. Theoretical and Applied Genetics, 112, 509-516. doi:10.1007/s00122-005-0154-5.