Diversity, relationships, and genetic fingerprinting of the Listada de Gandía eggplant landrace using genomic SSRS and EST-SSRS

Scientia Horticulturae

Volumn 129, Issue 2, 2011, Pages 238-246

  Mũnoz Falcón, Julio E ^a   Vilanova, Santiago ^b   Plazas, Mariola ^b   Prohens, Jaime ^b  

^a INSTITUTO NACIONAL DE INVESTIGACIONES AGRÍCOLAS INIA   (Venezuela)

^b UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

Author keywords

EST SSRs; Fingerprinting; Genomic SSRs; Landraces; Listada de Gand a; Solanum melongena

Indexed keywords

CULTIVAR; DICOTYLEDON; DNA FINGERPRINTING; GENETIC MARKER; GENETIC VARIATION; GENOMICS; POLYMORPHISM;

EPINEPHELUS LATIFASCIATUS; SOLANUM MELONGENA;

EID: 84855203292     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2011.03.034     Document Type: Article

References (48)

1. Andersen, J.R., Lubberstedt, T., 2003. Functional markers in plants. Trends Plant Sci. 8, 554-560.
2. Anderson, J., Churchill, A., Autrique, J., Tanksley, S., Sorrells, M., 1993. Optimizing parental selection for genetic linkage maps. Genome 36, 181-186.
3. Babcock, B.A., Clemens, R., 2004. Geographical Indications and Property Rights: Protecting Value-Added Agricultural Products. MATIC Briefing Paper 04-MBP 7. Iowa State University, Iowa, USA.
4. Barchi, L., Lanteri, S., Portis, E., Stàgel, A., Valè, G., Toppino, L., Rotino, G.L., 2010. Segregation distortion and linkage analysis in eggplant (Solanum melongena L.). Genome 53, 805-815.
5. Castelo, A.T., Martins, W., Gao, G.R., 2002. TROLL: tandem repeat occurrence locator. Bioinformatics 18, 634-636.
6. Castro, I., Martín, J.P., Ortiz, J.M., Pinto-Carnide, O., 2011. Varietal discrimination and genetic relationships of Vitis vinifera L. cultivars from twomajor Controlled Appellation (DOC) regions in Portugal. Sci. Hort. 127, 507-514.
7. Chabane, K., Abblett, A., Cordeiro, G.M., Valkoun, J., Henry, R.J., 2005. EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley. Genet. Res. Crop Evol. 52, 903-909.
8. Commission of the European Communities, 2006. Council Regulation (EC) No. 509/2006 of 20 March 2006 on the protection of geographical indications and designations of origin for agricultural products and foodstuffs. Off. J. Eur. Union L93, 12-25.
9. Coombs, J., Frank, L., Douches, D., 2004. An applied fingerprinting system for cultivated potato using simple sequence repeats. Am. J. Potato Res. 81, 243-250.
10. Demir, K., Bakir, M., Sarikamiş, G., Acunalp, S., 2010. Genetic diversity of eggplant (Solanum melongena) germplasm from turkey assessed by SSR and RAPD markers. Genet. Mol. Res. 9, 1568-1576.
11. Duran, C., Appleby, N., Edwards, D., Batley, J., 2009. Molecular genetic markers: discovery, applications, data storage and visualization. Curr. Bioinform. 4, 16-27.
12. Felsenstein, J., 1989. PHYLIP: phylogeny inference package (version 3.2). Cladistics 5, 164-166.
13. Gajewski, M., Kowalczyk, K., Bajer, M., Radzanowska, J., 2009. Quality of eggplant fruits in relation to growing medium used in greenhouse cultivation and to a cultivar. Notulae Botanicae Horti Agrobotanici Cluj-Napoca 37, 229-234.
14. Gracia, A., Albisu, L.M., 2001. Food consumption in the European Union: main determinants and country differences. Agribusiness 17, 469-488.
15. Ince, A.G., Karaca, M., Onus, A.N., 2010. Polymorphic microsatellite markers transferable across species. Plant Mol. Biol. Rep. 28, 285-291.
16. Lanteri, S., Acquadro, A., Quagliotti, L., Portis, E., 2003. RAPD and AFLP assessment of genetic variation in a landrace of pepper (Capsicum annuum L.), grown in North-West Italy. Genet. Res. Crop Evol. 50, 723-735.
17. Lefebvre, V., Goffinet, B., Chauvet, J.C., Caromel, B., Signoret, P., Brand, R., Palloix, A., 2001. Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data. Theor. Appl. Genet. 102, 741-750.
18. Lee, J.M., Nahm, S.H., Kim, Y.M., Kim, B.D., 2004. Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor. Appl. Genet. 108, 619-627.
19. Li, Y.C., Korol, A.B., Fahima, T., Nevo, E., 2004. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 21, 991-1007.
20. Liu, K., Muse, S., 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21, 2128-2129.
21. MAPA. 2010. Denominaciones de origen e indicaciones geográficas. Consulted 19 Nov. 2010. http://www.mapa.es/es/alimentacion/pags/Denominacion/consulta.asp.
22. Martin, M.A., Mattioni, C., Cherubini, M., Taurchini, D., Villani, F., 2010. Genetic diversity in European chestnut populatyions by means of genomic and genic microsatellite markers. Tree Genet. Genom. 6, 735-744.
23. Mazzucato, A., Ficcadenti, N., Caioni, M., Mosconi, P., Piccinini, E., Sanampudi, V.R.R.,
24. McLaughlin, E.W., 2004. The dynamics of fresh fruit and vegetable pricing in the supermarket channel. Prev. Med. 39, S81-S87.
25. Mohammadi, S.A., Prassana, B.M., 2003. Analysis of genetic diversity in crop plantssalient statistical tools and considerations. Crop Sci. 43, 1235-1248.
26. Morgante, M., Hanafey, M., Powell, W., 2002. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 30, 194-200.
27. Mũnoz-Falcón, J.E., Prohens, J., Vilanova, S., Nuez, F., 2008. Characterization, diversity, and relationships of the Spanish striped (Listada) eggplants: amodel for the enhancement and protection of local heirlooms. Euphytica 164, 405-419.
28. Mũnoz-Falcón, J.E., Prohens, J., Vilanova, S., Ribas, F., Castro, A., Nuez, F., 2008. Distinguishing a protected geographical indication vegetable (Almagro eggplant) from closely related materials with selected morphological traits and molecular markers. J. Sci. Food Agric. 89, 320-328.
29. Nei, M., 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 70, 3321-3323.
30. Nunome, T., Suwabe, K., Iketani, H., Hirai, M., 2003. Identification and characterization of microsatellites in eggplant. Plant Breed. 122, 256-262.
31. Nybom, N., 2004. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol. Ecol. 13, 1143-1155.
32. Powell, W., Machray, G., Provan, J., 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1, 215-222.
33. Portis, E., Nervo, G., Cavallanti, F., Barchi, L., Lanteri, S., 2006. Multivariate analysis of genetic relationships between Italian pepper landraces. Crop Sci. 46, 2517-2525.
34. Prohens, J., Blanca, J.M., Rodríguez-Burruezo, A., Nuez, F., 2004. Spanish traditional varieties of eggplant: diversity and interest for plant breeding. In: Proc. XIIth EUCARPIA Mtg. Genet. Breed. Capsicum Eggplant, pp. 38-43.
35. Prohens, J., Mũnoz, J.E., Vilanova, S., Castro, A., Ribas, F., Nuez, F., 2007. Participatory breeding in eggplant: selection and improvement for quality and yield in a local landrace. In: Niemirowicz-Szczytt, K. (Ed.), Progress in Research on Capsicum & Eggplant. Warsaw University of Life Sciences Press, Warsaw, Poland, pp. 221-230.
36. Prohens, J., Mũnoz-Falcón, J.E., Rodríguez-Burruezo, A., Ribas, F., Castro, A., Nuez, F., 2009. H15, an Almagro-type pickling eggplant with high yield and reduced prickliness. Hortscience 44, 2017-2019.
37. Prohens, J., Nuez, F., 2001. Variedades tradicionales de berenjena en Espãna. Vida Rural 130, 46-50.
38. Raigón, M.D., Rodríguez-Burruezo, A., Prohens, J., 2010. Effects of organic and conventional cultivation methods on composition of eggplant fruits. J. Food Agric. Chem. 58, 6833-6840.
39. Rao, R., Corrado, G., Bianchi, M., DiMauro, A., 2006. (GATA)4 DNAfingerprinting identifies morphologically characterized 'San Marzano' tomato plants. Plant Breed. 125, 173-176.
40. Schuelke, M., 2000. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18, 233-234.
41. Stàgel, A., Portis, E., Toppino, L., Rotino, G.L., Lanteri, S., 2008. Gene-based microsatellite development for mapping and phylogeny studies in eggplant. BMC Genom. 9, 357.
42. Tam, S.M., Mhiri, C., Vogelaar, A., Kerkveld, M., Pearce, S.R., Grandbastien, M.A., 2005. Comparative analyses of genetic diversities within tomato and pepper collections detected by retro-transposon based SSAP, AFLP and SSR. Theor. Appl. Genet. 110, 819-831.
43. Tehrani, M.S., Mardi, M., Sahebi, J., Catalán, P., Díaz-Pérez, A., 2009. Genetic diversity and structure among Iranian tall fescue populations based on genomic-SSR and EST-SSR marker analysis. Plant Syst. Evol. 282, 57-70.
44. Tümbilen, Y., 2007. Determination of genetic diversity between eggplant and its wild relatives. M.Sc. Thesis. Izmir Institute of Technology, Izmir, Turkey.
45. UPOV, 2002. General Introduction to the Examination of Distinctness Uniformity and Stability and the Development of Harmonized Descriptors of New Varieties of Plants. International Union for the Protection of New Varieties of Plants, Geneva, Switzerland.
46. Varshney, R.K., Sigmund, R., Boerner, A., Korzun, V., Stein, N., Sorrells, M., Langridge, P., Graner, A., 2005. Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Sci. 168, 195-202.
47. Yeh, F.C., Yang, R., Boyle, T.J., Yez, Z., Xiyan, J.M., 2000. Popgene 32, Microsoft Windows-Based Freeware for Population Genetics Analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada.
48. Zeven, A.C., 1998. Landraces: a review of definitions and classifications. Euphytica 104, 127-139.