Establishment of DNA barcodes for the identification of the botanical sources of the Chinese 'cooling' beverage

Food Control

Volumn 25, Issue 2, 2012, Pages 758-766

  Li, Ming ^a   Wong, Ka Lok ^a   Chan, Wing Hin ^a   Li, Jie Xin ^a   But, Paul Pui Hay ^a   Cao, Hui ^b   Shaw, Pang Chui ^a  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^b National Engineering Research Centre for Modernization of Traditional Chinese Medicine   (China)

Author keywords

Chinese 'cooling' beverage; DNA barcode; Herbal tea; Liangcha; Molecular identification

Indexed keywords

EID: 84855166262     PISSN: 09567135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodcont.2011.12.008     Document Type: Article

References (33)

1. Alvarez I., Wendel J.F. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 2003, 29(3):417-434.
2. Asahina H., Shinozaki J., Masuda K., Morimitsu Y., Satake M. Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences. Journal of Natural Medicine 2010, 64(2):133-138.
3. Baldwin B.G., Sanderson M.J., Porter J.M., Wojciechowski M.F., Campbell C.S., Donoghue M.J. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 1995, 82:247-277.
4. Bao L., Yao X.S., He R.R., Kurihara H. Protective effects of Guangdong Liangcha grandes on restraint stress-induced liver damage in mice. China Journal of Chinese Materia Medica 2008, 33(6):664-669.
5. CBOL Plant Working Group ADNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 2009, 106(31):12794-12797.
6. Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., et al. Land plants and DNA barcodes: short-term and long-term goals. Philosophical Transactions of the Royal Society B: Biological Sciences 2005, 360(1462):1889-1895.
7. Chen S., Yao H., Han J., Liu C., Song J., Shi L., et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 2010, 5(1):e8613.
8. China Plant BOL Group, Li D.Z., Gao L.M., Li H.T., Wang H., Ge X.J., et al. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences of the United States of America 2011, 108(49):19641-19646.
9. Devey D.S., Chase M.W., Clarkson J.J. Astuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non-coding plastid regions. Taxon 2009, 58(1):7-15.
10. Fazekas A.J., Burgess K.S., Kesanakurti P.R., Graham S.W., Newmaster S.G., Husband B.C., et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One 2008, 3(7):e2802.
11. Fazekas A.J., Steeves R., Newmaster S.G. Improving sequencing quality from PCR products containing long mononucleotide repeats. BioTechniques 2010, 48(4):277-285.
12. Fazekas A.J., Steeves R., Newmaster S.G., Hollingsworth P.M. Stopping the stutter: improvements in sequence quality from regions with mononucleotide repeats can increase the usefulness of non-coding regions for DNA barcoding. Taxon 2010, 59(3):694-697.
13. Gao T., Sun Z., Yao H., Song J., Zhu Y., Ma X., et al. Identification of Fabaceae plants using the DNA barcode matK. Planta Medica 2011, 77(1):92-94.
14. Goldstein P.Z., DeSalle R. Integrating DNA barcode data and taxonomic practice: determination, discovery, and description. Bioessays 2011, 33(2):135-147.
15. Guo X., Wang X., Su W., Zhang G., Zhou R. DNA barcodes for discriminating the medicinal plant Scutellaria baicalensis (Lamiaceae) and its adulterants. Biological & Pharmaceutical Bulletin 2011, 34(8):1198-1203.
16. Hajibabaei M., Singer G.A., Hebert P.D., Hickey D.A. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics 2007, 23(4):167-172.
17. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 1999, 41:95-98.
18. Hebert P.D., Cywinska A., Ball S.L., deWaard J.R. Biological identifications through DNA barcodes. Proceedings Biological Sciences 2003, 270(1512):313-321.
19. Hollingsworth P.M., Graham S.W., Little D.P. Choosing and using a plant DNA barcode. PLoS One 2011, 6(5):e19254.
20. Hu S.Y. Herbal teas and Populace health care in tropical China. American Journal of Chinese Medicine 1997, 25(1):103-134.
21. Kress W.J., Erickson D.L. Atwo-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One 2007, 2(6):e508.
22. Kress W.J., Wurdack K.J., Zimmer E.A., Weigt L.A., Janzen D.H. Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America 2005, 102(23):8369-8374.
23. Lahaye R., van der Bank M., Bogarin D., Warner J., Pupulin F., Gigot G., et al. DNA barcoding the floras of biodiversity hotspots. Proceedings of the National Academy of Sciences of the United States of America 2008, 105(8):2923-2928.
24. Li M., Cao H., But P.P.H., Shaw P.C. Identification of herbal medicinal materials using DNA barcodes. Journal of Systematics and Evolution 2011, 49(3):271-283.
25. Li M., Jiang R.W., Hon P.M., Cheng L., Li L.L., Zhou J.R., et al. Authentication of the anti-tumor herb Baihuasheshecao with bioactive marker compounds and molecular sequences. Food Chemistry 2010, 119:1239-1245.
26. Liu W.Q., Li L.K., Wang R.R., Yang L.M., Peng T., Zheng Y.T. Anti-HIV activities of extracts from Chinese medicinal formula Liangcha. Journal of Chinese Medicinal Materials 2010, 33(9):1433-1438.
27. Lou S.K., Wong K.L., Li M., But P.P., Tsui S.K., Shaw P.C. An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database). BMC Genomics 2010, 11:402.
28. Ramadan H.A. Sequence of specific mitochondrial 16S rRNA gene fragment from Egyptian buffalo is used as a pattern for discrimination between river buffaloes, cattle, sheep and goats. Molecular Biology Reports 2011, 38(6):3929-3934.
29. Song J., Yao H., Li Y., Li X., Lin Y., Liu C., et al. Authentication of the family Polygonaceae in Chinese Pharmacopoeia by DNA barcoding technique. Journal of Ethnopharmacology 2009, 124(3):434-439.
30. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28(10):2731-2739.
31. Waugh J. DNA barcoding in animal species: progress, potential and pitfalls. Bioessays 2007, 29(2):188-197.
32. Yao H., Song J., Liu C., Luo K., Han J., Li Y., et al. Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS One 2010, 5(10).
33. Zuo Y., Chen Z., Kondo K., Funamoto T., Wen J., Zhou S. DNA barcoding of Panax species. Planta Medica 2011, 77(2):182-187.