Role of positive selection in functional divergence of mammalian neuronal apoptosis inhibitor proteins during evolution

Journal of Biomedicine and Biotechnology

Volumn 2011, Issue , 2011, Pages

  Kong, Fanzhi ^a   Su, Zhaoliang ^a   Zhou, Chenglin ^b   Sun, Caixia ^a   Liu, Yanfang ^a   Zheng, Dong ^a   Yuan, Hongyan ^a   Yin, Jingping ^a   Fang, Jie ^a   Wang, Shengjun ^a   Xu, Huaxi ^a  

^a JIANGSU UNIVERSITY   (China)

^b Zhenjiang Entry Exit Inspection and Quarantine Bureau   (China)

Author keywords

[No Author keywords available]

Indexed keywords

NEURONAL APOPTOSIS INHIBITORY PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; GENE DUPLICATION; GENETIC SELECTION; GENETIC VARIABILITY; HUMAN; MOLECULAR EVOLUTION; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POSITIVE SELECTION; PROTEIN STRUCTURE; ANIMAL; APOPTOSIS; GENETICS; MOLECULAR GENETICS; MOUSE; PHYLOGENY; PROTEIN CONFORMATION; PSEUDOGENE; RAT; STRUCTURE ACTIVITY RELATION;

MAMMALIA;

AMINO ACID SEQUENCE; ANIMALS; APOPTOSIS; EVOLUTION, MOLECULAR; HUMANS; MICE; MOLECULAR SEQUENCE DATA; NEURONAL APOPTOSIS-INHIBITORY PROTEIN; PHYLOGENY; PROTEIN CONFORMATION; PSEUDOGENES; RATS; SELECTION, GENETIC; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 84855163897     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2011/809765     Document Type: Article

References (43)

1. Martinon F., Tschopp J., NLRs join TLRs as innate sensors of pathogens Trends in Immunology 2005 26 8 447 454 (Pubitemid 41008082)
2. Kufer T. A., Fritz J. H., Philpott D. J., NACHT-LRR proteins (NLRs) in bacterial infection and immunity Trends in Microbiology 2005 13 8 381 388 (Pubitemid 41073809)
3. Fritz J. H., Ferrero R. L., Philpott D. J., Girardin S. E., Nod-like proteins in immunity, inflammation and disease Nature Immunology 2006 7 12 1250 1257 (Pubitemid 46111242)
4. Rietdijk S. T., Burwell T., Bertin J., Coyle A. J., Sensing intracellular pathogens-NOD-like receptors Current Opinion in Pharmacology 2008 8 3 261 266
5. Shaw M. H., Reimer T., Kim Y. G., Nuez G., NOD-like receptors (NLRs): bona fide intracellular microbial sensors Current Opinion in Immunology 2008 20 4 377 382
6. Tschopp J., Martinon F., Burns K., NALPs: a novel protein family involved in inflammation Nature Reviews Molecular Cell Biology 2003 4 2 95 104 (Pubitemid 36172693)
7. Proell M., Riedl S. J., Fritz J. H., Rojas A. M., Schwarzenbacher R., The Nod-Like Receptor (NLR) family: a tale of similarities and differences PLoS ONE 2008 3 4
8. Cogulu O., Durmaz B., Pehlivan S., Alpman A., Ozkinay F., Evaluation of the SMN and NAIP genes in a family: homozygous deletion of the SMN2 gene in the fetus and outcome of the pregnancy Genetic Testing and Molecular Biomarkers 2009 13 3 287 288
9. Omrani O., Bonyadi M., Barzgar M., Molecular analysis of the SMN and NAIP genes in Iranian spinal muscular atrophy patients: original Article Pediatrics International 2009 51 2 193 196
10. Watihayati M. S., Fatemeh H., Marini M., Atif A. B., Zahiruddin W. M., Sasongko T. H., Tang T. H., Zabidi-Hussin Z., Nishio H., Zilfalil B. A., Combination of SMN2 copy number and NAIP deletion predicts disease severity in spinal muscular atrophy Brain and Development 2009 31 1 42 45
11. Lightfield K. L., Persson J., Brubaker S. W., Witte C. E., von Moltke J., Dunipace E. A., Henry T., Sun Y. H., Cado D., Dietrich W. F., Monack D. M., Tsolis R. M., Vance R. E., Critical function for Naip5 in inflammasome activation by a conserved carboxy-terminal domain of flagellin Nature Immunology 2008 9 10 1171 1178
12. Liston P., Roy N., Tamai K., Lefebvre C., Baird S., Cherton-Horvat G., Farahani R., McLean M., Ikeda J. E., MacKenzie A., Korneluk R. G., Suppression of apoptosis in mammalian cells by NAIP and a related family of IAP genes Nature 1996 379 6563 349 353 (Pubitemid 26033078)
13. Christie L. A., Su J. H., Tu C. H., Dick M. C., Zhou J., Cotman C. W., Differential regulation of inhibitors of apoptosis proteins in Alzheimer's disease brains Neurobiology of Disease 2007 26 1 165 173 (Pubitemid 46436496)
14. Crocker S. J., Wigle N., Liston P., Thompson C. S., Lee C. J., Xu D., Roy S., Nicholson D. W., Park D. S., MacKenzie A., Korneluk R. G., Robertson G. S., NAIP protects the nigrostriatal dopamine pathway in an intrastriatal 6-OHDA rat model of Parkinson's disease European Journal of Neuroscience 2001 14 2 391 400 (Pubitemid 32777644)
15. Hebb A. L. O., Moore C. S., Bhan V., Campbell T., Fisk J. D., Robertson H. A., Thorne M., Lacasse E., Holcik M., Gillard J., Crocker S. J., Robertson G. S., Expression of the inhibitor of apoptosis protein family in multiple sclerosis reveals a potential immunomodulatory role during autoimmune mediated demyelination Multiple Sclerosis 2008 14 5 577 594 (Pubitemid 351954399)
16. Seidl R., Bidmon B., Bajo M., Yoo B. C., Cairns N., LaCasse E. C., Lubec G., Evidence for apoptosis in the fetal Down syndrome brain Journal of Child Neurology 2001 16 6 438 442 (Pubitemid 32631741)
17. Endo T., Abe S., Seidlar H. B. K., Nagaoka S., Takemura T., Utsuyama M., Kitagawa M., Hirokawa K., Expression of IAP family proteins in colon cancers from patients will different age groups Cancer Immunology, Immunotherapy 2004 53 9 770 776 (Pubitemid 39149903)
18. Krajewska M., Krajewski S., Banares S., Huang X., Turner B., Bubendorf L., Kallioniemi O. P., Shabaik A., Vitiello A., Peehl D., Gao G. J., Reed J. C., Elevated expression of inhibitor of apoptosis proteins in prostate cancer Clinical Cancer Research 2003 9 13 4914 4925 (Pubitemid 37323298)
19. Nemoto T., Kitagawa M., Hasegawa M., Ikeda S., Akashi T., Takizawa T., Hirokawa K., Koike M., Expression of IAP family proteins in esophageal cancer Experimental and Molecular Pathology 2004 76 3 253 259 (Pubitemid 38569787)
20. Ting J. P. Y., Davis B. K., CATERPILLER: a novel gene family important in immunity, cell death, and diseases Annual Review of Immunology 2005 23 387 414 (Pubitemid 40563175)
21. Ting J. P. Y., Kastner D. L., Hoffman H. M., CATERPILLERs, pyrin and hereditary immunological disorders Nature Reviews Immunology 2006 6 3 183 195 (Pubitemid 43290988)
22. Vinzing M., Eitel J., Lippmann J., Hocke A. C., Zahlten J., Slevogt H., N'Guessan P. D., Gnther S., Schmeck B., Hippenstiel S., Flieger A., Suttorp N., Opitz B., NAIP and Ipaf control Legionella pneumophila replication in human cells Journal of Immunology 2008 180 10 6808 6815
23. Deveraux Q. L., Reed J. C., IAP family proteinssuppressors of apoptosis Genes and Development 1999 13 3 239 252
24. Dubrez-Daloz L., Dupoux A., Cartier J., IAPs: more than just inhibitors of apoptosis proteins Cell Cycle 2008 7 8 1036 1046
25. Huang S., Scharf J. M., Growney J. D., Endrizzi M. G., Dietrich W. F., The mouse Naip gene cluster on Chromosome 13 encodes several distinct functional transcripts Mammalian Genome 1999 10 10 1032 1035 (Pubitemid 29470950)
26. Altschul S. F., Madden T. L., Schffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389 3402 (Pubitemid 27359211)
27. Larkin M. A., Blackshields G., Brown N. P., Chenna R., Mcgettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A., Lopez R., Thompson J. D., Gibson T. J., Higgins D. G., Clustal W and Clustal X version 2.0 Bioinformatics 2007 23 21 2947 2948 (Pubitemid 350162903)
28. Tamura K., Dudley J., Nei M., Kumar S., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Molecular Biology and Evolution 2007 24 8 1596 1599 (Pubitemid 47236692)
29. Gu X., Velden K. V., DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family Bioinformatics 2002 18 3 500 501 (Pubitemid 34284959)
30. Gu X., Functional divergence in protein (family) sequence evolution Genetica 2003 118 2-3 133 141 (Pubitemid 36821045)
31. Gu X., Statistical methods for testing functional divergence after gene duplication Molecular Biology and Evolution 1999 16 12 1664 1674
32. Gu X., Maximum-likelihood approach for gene family evolution under functional divergence Molecular Biology and Evolution 2001 18 4 453 464 (Pubitemid 32267997)
33. Kumar S., Tamura K., Nei M., MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment Briefings in Bioinformatics 2004 5 2 150 163
34. Sumiyama K., Saitou N., Ueda S., Adaptive evolution of the IgA hinge region in primates Molecular Biology and Evolution 2002 19 7 1093 1099 (Pubitemid 34743233)
35. Zhang J., Kumar S., Nei M., Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes Molecular Biology and Evolution 1997 14 12 1335 1338
36. Carter T. A., Bnnemann C. G., Wang C. H., Obici S., Parano E., Bonaldo M. D. F., Ross B. M., Penchaszadeh G. K., Mackenzie A., Soares M. B., Kunkel L. M., Gilliam T. C., A multicopy transcription-repair gene, BTF2p44, maps to the SMA region and demonstrates SMA associated deletions Human Molecular Genetics 1997 6 2 229 236 (Pubitemid 27078079)
37. Velasco E., Valero C., Valero A., Moreno F., Hernndez-Chico C., Molecular analysis of the SMN and NAIP genes in Spanish spinal muscular atrophy (SMA) families and correlation between number of copies of cBCD541 and SMA phenotype Human Molecular Genetics 1996 5 2 257 263
38. Liston P., Fong W. G., Korneluk R. G., The inhibitors of apoptosis: there is more to life than Bcl2 Oncogene 2003 22 53 8568 8580 (Pubitemid 38019194)
39. Clark A. G., Mackin K. M., Foster M. H., Tracking differential gene expression in MRL/MpJ versus C575BL/6 anergic B cells: molecular markers of autoimmunity Biomarker Insights 2008 2008 3 335 350 (Pubitemid 352024753)
40. Endrizzi M. G., Hadinoto V., Growney J. D., Miller W., Dietrich W. F., Genomic sequence analysis of the mouse Naip gene array Genome Research 2000 10 8 1095 1102
41. Sémon M., Wolfe K. H., Consequences of genome duplication Current Opinion in Genetics and Development 2007 17 6 505 512 (Pubitemid 350186344)
42. Guo S., Kim J., Molecular evolution of Drosophila odorant receptor genes Molecular Biology and Evolution 2007 24 5 1198 1207 (Pubitemid 47343644)
43. Bulmer M. S., Crozier R. H., Duplication and diversifying selection among termite antifungal peptides Molecular Biology and Evolution 2004 21 12 2256 2264 (Pubitemid 39488896)