-
1
-
-
33749050824
-
Towards neural circuit reconstruction with volume electron microscopy techniques
-
DOI 10.1016/j.conb.2006.08.010, PII S0959438806001140, Neuronal and Glial Cell Biology / New Technologies
-
K. L. Briggman and W. Denk, "Towards neural circuit reconstruction with volume electron microscopy techniques," Curr. Opin. Neurobiol., vol. 16, pp. 562-570, 2006. (Pubitemid 44466398)
-
(2006)
Current Opinion in Neurobiology
, vol.16
, Issue.5
, pp. 562-570
-
-
Briggman, K.L.1
Denk, W.2
-
2
-
-
53949102013
-
Ome sweet ome: What can the genome tell us about the connectome?
-
Jun.
-
J. W. Lichtman and J. R. Sanes, "Ome sweet ome: What can the genome tell us about the connectome?" Curr. Opin. Neurobiol., vol. 18, no. 3, pp. 346-53, Jun. 2008.
-
(2008)
Curr. Opin. Neurobiol.
, vol.18
, Issue.3
, pp. 346-53
-
-
Lichtman, J.W.1
Sanes, J.R.2
-
3
-
-
61349086148
-
The interscutularis muscle connectome
-
Feb. 10
-
J. Lu, J. C. Tapia, O. L. White, and J. W. Lichtman, "The interscutularis muscle connectome," PLoS Biol., vol. 7, no. 2, p. e32, Feb. 10, 2009
-
(2009)
PLoS Biol.
, vol.7
, Issue.2
-
-
Lu, J.1
Tapia, J.C.2
White, O.L.3
Lichtman, J.W.4
-
4
-
-
84555179517
-
-
Apr;
-
Erratum in: PLoS Biol. 2009 Apr;7(4):e1000108.
-
(2009)
Erratum In: PLoS Biol.
, vol.7
, Issue.4
-
-
-
5
-
-
77956990482
-
Ultrastructural analysis of hippocampal neuropil from the connectomics perspective
-
Y. Mishchenko, T. Hu, J. Spacek, J. Mendenhall, K. M. Harris, and D. B. Chklovskii, "Ultrastructural analysis of hippocampal neuropil from the connectomics perspective," Neuron, 2010.
-
Neuron
, vol.2010
-
-
Mishchenko, Y.1
Hu, T.2
Spacek, J.3
Mendenhall, J.4
Harris, K.M.5
Chklovskii, D.B.6
-
6
-
-
51049096764
-
An optimal-path approach for neural circuit reconstruction
-
E. Jurrus, R. Whitaker, B. W. Jones, R. Marc, and T. Tasdizen, "An optimal-path approach for neural circuit reconstruction," in Proc. IEEE ISBI, 2008, pp. 1609-1612.
-
(2008)
Proc. IEEE ISBI
, pp. 1609-1612
-
-
Jurrus, E.1
Whitaker, R.2
Jones, B.W.3
Marc, R.4
Tasdizen, T.5
-
7
-
-
66249148685
-
Semi-automated reconstruction of neural processes from large numbers of fluorescence images
-
May
-
J. Lu, J. C. Fiala, and J. W. Lichtman, "Semi-automated reconstruction of neural processes from large numbers of fluorescence images," PLoS One, vol. 4, no. 5, p. e5655, May 2009.
-
(2009)
PLoS One
, vol.4
, Issue.5
-
-
Lu, J.1
Fiala, J.C.2
Lichtman, J.W.3
-
8
-
-
57749197806
-
Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs
-
Y. Mishchenko, "Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs," J. Neurosci. Methods, vol. 176, pp. 276-289, 2009.
-
(2009)
J. Neurosci. Methods
, vol.176
, pp. 276-289
-
-
Mishchenko, Y.1
-
9
-
-
84555179514
-
Reconstruction of sparse circuits using multi-neuronal excitation (RESCUME)
-
Vancouver, B.C., Canada, Dec. 7-10
-
T. Hu and D. Chklovskii, "Reconstruction of sparse circuits using multi-neuronal excitation (RESCUME)," in Proc. 23rd Annual Conference on Neural Information Processing Systems (NIPS) 2009, Vancouver, B.C., Canada, Dec. 7-10, vol. 2, pp. 790-798.
-
(2009)
Proc. 23rd Annual Conference on Neural Information Processing Systems (NIPS)
, vol.2
, pp. 790-798
-
-
Hu, T.1
Chklovskii, D.2
-
10
-
-
65949084476
-
A computational framework for ultrastructural mapping of neural circuitry
-
10.1371/journal.pbio.1000074
-
J. R. Anderson, B. W. Jones, J.-H. Yang, M. V. Shaw, C. B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, U. V. Kanan, R. T. Whitaker, D. Mastronarde, T. Tasdizen, and R. E. Marc1, "A computational framework for ultrastructural mapping of neural circuitry," PLoS Biol., vol. 7, p. e1000074. 10.1371/journal.pbio.1000074, 2009.
-
(2009)
PLoS Biol.
, vol.7
-
-
Anderson, J.R.1
Jones, B.W.2
Yang, J.-H.3
Shaw, M.V.4
Watt, C.B.5
Koshevoy, P.6
Spaltenstein, J.7
Jurrus, E.8
Kanan, U.V.9
Whitaker, R.T.10
Mastronarde, D.11
Tasdizen, T.12
Marc, R.E.13
-
11
-
-
79955475405
-
Important factors for the three-dimensional reconstruction of neuronal structures from serial ultrathin sections
-
Article 4 Epub, May 29
-
Y. Kubota, S. Hatada, and Y. Kawaguchi, "Important factors for the three-dimensional reconstruction of neuronal structures from serial ultrathin sections," Front. Neural Circuits, vol. 3, Article 4, Epub, May 29, 2009.
-
(2009)
Front. Neural Circuits
, vol.3
-
-
Kubota, Y.1
Hatada, S.2
Kawaguchi, Y.3
-
12
-
-
78149243509
-
Interactive histology of large-scale biomedical image stacks
-
W. Jeong, J. Schneider, S. G. Turney, B. E. Faulkner-Jones, D. Meyer, R. Westermann, R. C. Reid, J. Lichtman, and H. Pfister, "Interactive histology of large-scale biomedical image stacks," IEEE Trans. Vis. Comput. Graph., vol. 16, no. 6, pp. 1386-1395, 2010.
-
(2010)
IEEE Trans. Vis. Comput. Graph.
, vol.16
, Issue.6
, pp. 1386-1395
-
-
Jeong, W.1
Schneider, J.2
Turney, S.G.3
Faulkner-Jones, B.E.4
Meyer, D.5
Westermann, R.6
Reid, R.C.7
Lichtman, J.8
Pfister, H.9
-
13
-
-
77951870906
-
SSECRETT and NeuroTrace: Interactive visualization and analysis tools for large-scale neuroscience datasets
-
W. Jeong, J. Beyer, M. Hadwiger, R. Blue, C. Law, A. Vazquez, C. Reid, J. Lichtman, and H. Pfister, "SSECRETT and NeuroTrace: interactive visualization and analysis tools for large-scale neuroscience datasets," IEEE Comput. Graph. Appl., vol. 30, pp. 58-70, 2010.
-
(2010)
IEEE Comput. Graph. Appl.
, vol.30
, pp. 58-70
-
-
Jeong, W.1
Beyer, J.2
Hadwiger, M.3
Blue, R.4
Law, C.5
Vazquez, A.6
Reid, C.7
Lichtman, J.8
Pfister, H.9
-
14
-
-
77649302828
-
Convolutional networks can learn to generate affinity graphs for image segmentation
-
S. C. Turaga, J. F. Murray, V. Jain, F. Roth, M. Helmstaedter, K. Briggman, W. Denk, and H. S. Seung, "Convolutional networks can learn to generate affinity graphs for image segmentation," Neural Comput., vol. 22, pp. 511-538, 2010.
-
(2010)
Neural Comput.
, vol.22
, pp. 511-538
-
-
Turaga, S.C.1
Murray, J.F.2
Jain, V.3
Roth, F.4
Helmstaedter, M.5
Briggman, K.6
Denk, W.7
Seung, H.S.8
-
16
-
-
78649546433
-
Automatic and reliable extractionof dendrite backbone from optical microscopy images
-
Proc. 2010 Int. Conf. Int. Comput. Sust. Energy and Enviro.: Part III (LSMS/ICSEE), Wuxi, China, Sep. 17-20
-
L. Xiao, X. Yuan, Z. Galbreath, and B. Roysam, "Automatic and reliable extractionof dendrite backbone from optical microscopy images," inProc. 2010 Int. Conf. Life Syst. Model Simul. Intell. Computing, and Proc. 2010 Int. Conf. Int. Comput. Sust. Energy and Enviro.: Part III (LSMS/ICSEE), Wuxi, China, Sep. 17-20, pp. 100-112.
-
Proc. 2010 Int. Conf. Life Syst. Model Simul. Intell. Computing
, pp. 100-112
-
-
Xiao, L.1
Yuan, X.2
Galbreath, Z.3
Roysam, B.4
-
17
-
-
77955212860
-
Piecewise linear cylinder models for 3-dimensional axon segmentation in brainbow imagery
-
From Nano to Macro, Apr. 14-17, Rotterdam, The Netherlands
-
E. Bas and D. Erdogmus, "Piecewise linear cylinder models for 3-dimensional axon segmentation in brainbow imagery," in Proc. 2010 IEEE Int. Symp. Biomed. Imag.: From Nano to Macro, Apr. 14-17, Rotterdam, The Netherlands, pp. 1297-1300.
-
Proc. 2010 IEEE Int. Symp. Biomed. Imag
, pp. 1297-1300
-
-
Bas, E.1
Erdogmus, D.2
-
18
-
-
77956008798
-
Delineating trees in noisy 2D images and 3D image-stacks
-
San Francisco, CA, Jun. 13-18
-
G. Gonzalez, E. Turetken, F. Fleuret, and P. Fua, "Delineating trees in noisy 2D images and 3D image-stacks," in Proc. IEEE Conf. Comput. Vision and Pattern Recog. (CVPR), 2010, San Francisco, CA, Jun. 13-18, pp. 2799-2806.
-
(2010)
Proc. IEEE Conf. Comput. Vision and Pattern Recog. (CVPR)
, pp. 2799-2806
-
-
Gonzalez, G.1
Turetken, E.2
Fleuret, F.3
Fua, P.4
-
19
-
-
62549111799
-
The fractionsofshort-and long-range connectionsinthe visual cortex
-
A. Stepanyants, L. M. Martinez, A. S. Ferecsko, and Z. F. Kisvrday, "The fractionsofshort-and long-range connectionsinthe visual cortex," PNAS, vol. 106, no. 9, pp. 3555-3560, 2009.
-
(2009)
PNAS
, vol.106
, Issue.9
, pp. 3555-3560
-
-
Stepanyants, A.1
Martinez, L.M.2
Ferecsko, A.S.3
Kisvrday, Z.F.4
-
20
-
-
77954194397
-
Automated tracking and analysis of centrosomes in early caenorhabditis elegans embryos
-
S. Jaensch, M. Decker, A. A. Hyman, and E. W. Myers, "Automated tracking and analysis of centrosomes in early caenorhabditis elegans embryos," Bioinformatics, vol. 26, no. 12, pp. i13-i20, 2010.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
Jaensch, S.1
Decker, M.2
Hyman, A.A.3
Myers, E.W.4
-
21
-
-
77950679704
-
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
-
H. Peng, Z. Ruan, F. Long, J. H. Simpson, and E. W. Myers, "V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets," Nature Biotechnol., vol. 28, pp. 348-353, 2010.
-
(2010)
Nature Biotechnol.
, vol.28
, pp. 348-353
-
-
Peng, H.1
Ruan, Z.2
Long, F.3
Simpson, J.H.4
Myers, E.W.5
-
22
-
-
83055184545
-
Fast extraction of neuron morphologies from large-scale SBFSEM image stacks
-
DOI: 10.1007/s10827-011-0316-1
-
S. Lang, P. Drouvelis, E. Tafaj, P. Bastian, and B. Sakmann, "Fast extraction of neuron morphologies from large-scale SBFSEM image stacks," J. Comput. Neurosci., DOI: 10.1007/s10827-011-0316-1.
-
J. Comput. Neurosci
-
-
Lang, S.1
Drouvelis, P.2
Tafaj, E.3
Bastian, P.4
Sakmann, B.5
-
23
-
-
84555174496
-
Accelerating feature based registration using the Johnson-Lindenstrauss Lemma
-
London, U.K., Sep. 20-24
-
A. Akselrod-Ballin, D. Bock, R. C. Reid, and S. K. Warfield, "Accelerating feature based registration using the Johnson-Lindenstrauss Lemma," in Proc. 12th Int. Conf. Med. Image Comput. Comput.-Assisted Intervention: Part I (MICCAI), London, U.K., Sep. 20-24, pp. 632-639, 2009.
-
(2009)
Proc. 12th Int. Conf. Med. Image Comput. Comput.-Assisted Intervention: Part i (MICCAI)
, pp. 632-639
-
-
Akselrod-Ballin, A.1
Bock, D.2
Reid, R.C.3
Warfield, S.K.4
-
28
-
-
79952593905
-
CnC-CUDA: Declar-ative programming for GPUs
-
Houston, TX, Oct.
-
M. Grossman, A. Simion, Z. Budimlic, and V. Sarkar, "CnC-CUDA: Declar-ative programming for GPUs," in Proc. 23rd Int Workshop Languages and Compilers for Parallel Comput. (LCPC), Houston, TX, Oct. 7-9, 2010, pp. 230-245.
-
Proc. 23rd Int Workshop Languages and Compilers for Parallel Comput. (LCPC)
, vol.7-9
, Issue.2010
, pp. 230-245
-
-
Grossman, M.1
Simion, A.2
Budimlic, Z.3
Sarkar, V.4
-
29
-
-
84555199232
-
Capturing and composing parallel patterns with Intel CnC
-
Berkeley, CA, Jun.2010
-
R. Newton, F. Schlimbach, M. Hampton, and K. Knobe, "Capturing and composing parallel patterns with Intel CnC," in Proc. 2nd USENIX Workshop Hot Topics Parallelism (HotPar'10), Berkeley, CA, Jun.2010.
-
Proc. 2nd USENIX Workshop Hot Topics Parallelism (HotPar'10)
-
-
Newton, R.1
Schlimbach, F.2
Hampton, M.3
Knobe, K.4
-
30
-
-
79952595480
-
The concurrent collections programming model
-
D. Padua, Ed. New York: Springer-Verlag
-
M. G. Burke, K. Knobe, R. Newton, and V. Sarkar, "The concurrent collections programming model," in Encyclopedia of Parallel Computing, D. Padua, Ed. New York: Springer-Verlag, 2011.
-
Encyclopedia of Parallel Computing
, pp. 2011
-
-
Burke, M.G.1
Knobe, K.2
Newton, R.3
Sarkar, V.4
-
31
-
-
82655187003
-
The CnC programming model
-
Z. Budimlic, M. Burke, V. Cave, K. Knobe, G. P. Lowney, R. Newton, J. Palsberg, D. Peixotto, V. Sarkar, F. Schlimbach, and S. Tasirlar, "The CnC programming model," J. Scientific Programming, 2010.
-
(2010)
J. Scientific Programming
-
-
Budimlic, Z.1
Burke, M.2
Cave, V.3
Knobe, K.4
Lowney, G.P.5
Newton, R.6
Palsberg, J.7
Peixotto, D.8
Sarkar, V.9
Schlimbach, F.10
Tasirlar, S.11
-
32
-
-
77957017889
-
Semi-automated reconstruction of neural circuits using electron microscopy
-
D.B. Chklovskii, S. Vitaladevuni, and L. K. Scheffer, "Semi-automated reconstruction of neural circuits using electron microscopy," Curr. Opin. Neurobiol., vol. 20, no. 5, pp. 667-675, 2010.
-
(2010)
Curr. Opin. Neurobiol.
, vol.20
, Issue.5
, pp. 667-675
-
-
Chklovskii, D.B.1
Vitaladevuni, S.2
Scheffer, L.K.3
-
33
-
-
77955985601
-
Boundary learning by optimization with topological constraints
-
San Francisco, CA
-
V. Jain, B. Bollmann, M. Richardson, D. R. Berger, M. N. Helmstaedter, K. L. Briggman, W. Denk, J. B. Bowden, J. M. Mendenhall, W. C. Abraham, K. M. Harris, N. Kasthuri, K. J. Hayworth, R. Schalek, J. C. Tapia, J. W. Lichtman, and H. S. Seung, "Boundary learning by optimization with topological constraints," in Proc. IEEE Comput. Vision and Pattern Recog. (CVPR), San Francisco, CA, 2010.
-
(2010)
Proc. IEEE Comput. Vision and Pattern Recog. (CVPR)
-
-
Jain, V.1
Bollmann, B.2
Richardson, M.3
Berger, D.R.4
Helmstaedter, M.N.5
Briggman, K.L.6
Denk, W.7
Bowden, J.B.8
Mendenhall, J.M.9
Abraham, W.C.10
Harris, K.M.11
Kasthuri, N.12
Hayworth, K.J.13
Schalek, R.14
Tapia, J.C.15
Lichtman, J.W.16
Seung, H.S.17
-
34
-
-
77957021569
-
Machines that learn to segment images: A crucial technology for connectomics
-
V. Jain, H. S. Seung, and S. C. Turaga, "Machines that learn to segment images: A crucial technology for connectomics," Curr. Opin. Neurobiol., vol. 20, pp. 1-14, 2010.
-
(2010)
Curr. Opin. Neurobiol.
, vol.20
, pp. 1-14
-
-
Jain, V.1
Seung, H.S.2
Turaga, S.C.3
-
35
-
-
79952376773
-
Network anatomy and in vivo physiology of visual cortical neurons
-
10 Mar.
-
D. D. Bock, W.-C. A. Lee, A. M. Kerlin, M. L. Andermann, G. Hood, A. W. Wetzel, S. Yurgenson, E. R. Soucy, H. S. Kim, and R. C. Reid, "Network anatomy and in vivo physiology of visual cortical neurons," Nature, vol. 471, pp. 177-182, 10 Mar. 2011.
-
(2011)
Nature
, vol.471
, pp. 177-182
-
-
Bock, D.D.1
Lee, W.-C.A.2
Kerlin, A.M.3
Andermann, M.L.4
Hood, G.5
Wetzel, A.W.6
Yurgenson, S.7
Soucy, E.R.8
Kim, H.S.9
Reid, R.C.10
-
36
-
-
79952380642
-
Wiring specificity in the direction-selectivity circuit of the retina
-
10 Mar.
-
K. L. Briggman, M. Helmstaedter, and W. Denk, "Wiring specificity in the direction-selectivity circuit of the retina," Nature, vol. 471, p. 183188, 10 Mar. 2011.
-
(2011)
Nature
, vol.471
, pp. 183188
-
-
Briggman, K.L.1
Helmstaedter, M.2
Denk, W.3
-
37
-
-
79960844955
-
High-accuracy neurite reconstruction for high-throughput neuroanatomy
-
M. Helmstaedter, K. L. Briggman, and W. Denk, "High-accuracy neurite reconstruction for high-throughput neuroanatomy," Nature Neurosci., vol. 14, pp. 1081-1088, 2011.
-
Nature Neurosci.
, vol.14
, Issue.2011
, pp. 1081-1088
-
-
Helmstaedter, M.1
Briggman, K.L.2
Denk, W.3
-
38
-
-
0012593025
-
-
New York: Academic
-
R. Chandra, L. Dagum, D. Kohr, D. Maydan, J. McDonald, and R. Menon, Programming in OpenMP. New York: Academic, 2001.
-
(2001)
Programming in OpenMP
-
-
Chandra, R.1
Dagum, L.2
Kohr, D.3
Maydan, D.4
McDonald, J.5
Menon, R.6
|