-
1
-
-
0034507456
-
Functions and mechanisms of RNA editing
-
DOI 10.1146/annurev.genet.34.1.499
-
Gott, J.M. and Emeson, R.B. (2000) Functions and mechanisms of RNA editing. Annu Rev Genet. 34:499-531. (Pubitemid 32065931)
-
(2000)
Annual Review of Genetics
, vol.34
, pp. 499-531
-
-
Gott, J.M.1
Emeson, R.B.2
-
2
-
-
77951922861
-
Molecular diversity through RNA editing: A balancing act
-
Farajollahi, S. and Maas, S. (2010) Molecular diversity through RNA editing: a balancing act. Trends Genet. 26(5):221-30.
-
(2010)
Trends Genet.
, vol.26
, Issue.5
, pp. 221-230
-
-
Farajollahi, S.1
Maas, S.2
-
3
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura, K. (2010) Functions and Regulation of RNA Editing by ADAR Deaminases. Annu Rev Biochem. 79, 321-349.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
4
-
-
33646759917
-
A-to-I RNA editing and human disease
-
Maas, S., Kawahara, Y., Tamburro, K.M., Nishikura, K. (2006) A-to-I RNA editing and human disease. RNA Biol. 3(1):1-9.
-
(2006)
RNA Biol.
, vol.3
, Issue.1
, pp. 1-9
-
-
Maas, S.1
Kawahara, Y.2
Tamburro, K.M.3
Nishikura, K.4
-
5
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker, M.L. (2010) Sequencing technologies - the next generation. Nat Rev Genet. 11(1):31-46.
-
(2010)
Nat Rev Genet.
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
6
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nature Rev. Genet. 10, 57-63.
-
(2009)
Nature Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
7
-
-
66349122954
-
Genomewide identification of human RNA editing sites by parallel DNA capturing and sequencing
-
Li J.B., Levanon, E.Y., Yoon, J.K., Aach, J., Xie, B., Leproust, E., et al. (2009) Genomewide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science. 324(5931):1210-3.
-
(2009)
Science.
, vol.324
, Issue.5931
, pp. 1210-1213
-
-
Li, J.B.1
Levanon, E.Y.2
Yoon, J.K.3
Aach, J.4
Xie, B.5
Leproust, E.6
-
8
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium
-
The 1000 Genomes Project Consortium. (2010) A map of human genome variation from population-scale sequencing. Nature. 467 (7319):1061-73.
-
(2010)
Nature
, vol.467
, Issue.7319
, pp. 1061-1073
-
-
-
9
-
-
77952718611
-
Screening the human exome: A comparison of whole genome and whole transcriptome sequencing
-
Cirulli, E.T., Singh, A., Shianna, K.V., Ge, D., Smith, J.P., Maia, J.M., et al. (2010) Screening the human exome: a comparison of whole genome and whole transcriptome sequencing. Genome Biol. 11(5):R57.
-
(2010)
Genome Biol.
, vol.11
, Issue.5
-
-
Cirulli, E.T.1
Singh, A.2
Shianna, K.V.3
Ge, D.4
Smith, J.P.5
Maia, J.M.6
-
10
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
(Software available at
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25 (Software available at http://bowtie-bio.sourceforge. net).
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
11
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
(Software available at
-
Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R. and 1000 Genome Project Data Processing Subgroup (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-9 (Software available at http://samtools.sourceforge.net/).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
12
-
-
77249117360
-
Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
-
Chepelev, I., Wei, G., Tang, Q. and Zhao K. (2009) Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq. Nucleic Acids Res. 37(16):e106.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.16
-
-
Chepelev, I.1
Wei, G.2
Tang, Q.3
Zhao, K.4
-
13
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J. and Durbin, R. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18(11):1851-8.
-
(2008)
Genome Res.
, vol.18
, Issue.11
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
14
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 26(6):841-2.
-
(2010)
Bioinformatics.
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
15
-
-
58149200940
-
Human immunodeficiency virus type 1, human protein interaction database at NCBI
-
Fu, W., Sanders-Beer, B.E., Katz, K.S., Maglott, D.R., Pruitt, K.D. and Ptak, R.G. (2009) Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Research. 37(Database issue):D417-22.
-
(2009)
Nucleic Acids Research.
, vol.37
, Issue.DATABASE
-
-
Fu, W.1
Sanders-Beer, B.E.2
Katz, K.S.3
Maglott, D.R.4
Pruitt, K.D.5
Ptak, R.G.6
-
16
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon, M.J., Taft, R.J., Hashimoto, T., Kanamori-Katayama, M., Kawaji, H., Kawano, M., et al. (2010) Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res. 20(2):257-64.
-
(2010)
Genome Res.
, vol.20
, Issue.2
, pp. 257-264
-
-
De Hoon, M.J.1
Taft, R.J.2
Hashimoto, T.3
Kanamori-Katayama, M.4
Kawaji, H.5
Kawano, M.6
-
17
-
-
47049108907
-
CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing
-
Berro, R., Pedati, C., Kehn-Hall, K., Wu, W., Klase, Z., Even, Y., et al. CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing. J Virol. 82(14):7155-66.
-
J Virol.
, vol.82
, Issue.14
, pp. 7155-7166
-
-
Berro, R.1
Pedati, C.2
Kehn-Hall, K.3
Wu, W.4
Klase, Z.5
Even, Y.6
-
18
-
-
77954505224
-
DARNED: A DAtabase of RNa EDiting in humans
-
Kiran, A. and Baranov, P.V. (2010) DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics. 26(14):1772-6.
-
(2010)
Bioinformatics.
, vol.26
, Issue.14
, pp. 1772-1776
-
-
Kiran, A.1
Baranov, P.V.2
-
19
-
-
34250900982
-
Base-excision repair of oxidative DNA damage
-
DOI 10.1038/nature05978, PII NATURE05978
-
David, S.S., O'Shea, V.L. and Kundu, S. (2007) Base-excision repair of oxidative DNA damage. Nature. 447(7147):941-50. (Pubitemid 46975761)
-
(2007)
Nature
, vol.447
, Issue.7147
, pp. 941-950
-
-
David, S.S.1
O'Shea, V.L.2
Kundu, S.3
-
20
-
-
78650542645
-
RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1
-
Yeo, J., Goodman, R.A., Schirle, N.T., David, S.S. and Beal, P.A. (2010) RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1. Proc Natl Acad Sci USA. 107(48):20715-9.
-
(2010)
Proc Natl Acad Sci USA.
, vol.107
, Issue.48
, pp. 20715-20719
-
-
Yeo, J.1
Goodman, R.A.2
Schirle, N.T.3
David, S.S.4
Beal, P.A.5
-
21
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
DOI 10.1101/gr.7179508
-
Morin, R.D., O'Connor, M.D., Griffith, M., Kuchenbauer, F., Delaney, A., Prabhu, A.L., et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 18(4):610-21. (Pubitemid 351482785)
-
(2008)
Genome Research
, vol.18
, Issue.4
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.-L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
Eaves, C.J.11
Marra, M.A.12
-
22
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 25(9): 1105-11.
-
(2009)
Bioinformatics.
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
23
-
-
0036713510
-
Human non-synonymous SNPs: Server and survey
-
Ramensky, V., Bork, P., and Sunyaev, S. (2002) Human non-synonymous SNPs: server and survey. Nucleic Acids Res. 30(17):3894-900. (Pubitemid 35012462)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.17
, pp. 3894-3900
-
-
Ramensky, V.1
Bork, P.2
Sunyaev, S.3
|