Shift of phylogenic position in megalocytiviruses based on three different genes

Journal of Microbiology

Volumn 49, Issue 6, 2011, Pages 981-986

  Kwon, Se Ryun ^a   Nishizawa, Toyohiko ^b   Park, Jong Won ^c   Oh, Myung Joo ^b  

^a SunMoon University   (South Korea)

^b Chonnam National University   (South Korea)

^c National Fisheries Research and Development Institute (NFRDI)   (South Korea)

Author keywords

MCP gene; megalocytivirus; phylogeny; PstI fragment gene; Red seabream iridovirus; RSIVD

Indexed keywords

CAPSID PROTEIN;

ANIMAL; ANIMAL DISEASE; ARTICLE; CLASSIFICATION; DNA VIRUS INFECTION; FISH; FISH DISEASE; GENETICS; IRIDOVIRUS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; VIROLOGY;

ANIMALS; CAPSID PROTEINS; DNA VIRUS INFECTIONS; FISH DISEASES; FISHES; IRIDOVIRIDAE; MOLECULAR SEQUENCE DATA; PHYLOGENY;

IRIDOVIRUS; MEGALOCYTIVIRUS; MIRIDAE; PAGRUS MAJOR;

EID: 84555191949     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-011-1500-8     Document Type: Article

References (38)

1. Ao, J. and X. Chen. 2006. Identification and characterization of a novel gene encoding an RGD-containing protein in large yellow croaker iridovirus. Virology 355, 213-222.
2. Caipang, C. M. A., T. Takano, I. Hirono, and T. Aoki. 2006. Genetic vaccines protect red seabream, Pagrus major, upon challenge with red seabream iridovirus (RSIV). Fish Shellfish Immunol. 21, 130-138.
3. Chao, C. B., S. C. Yang, H. Y. Tsai, C. Y. Chen, C. S. Lin, and H. T. Huang. 2002. A nested PCR for the detection of grouper iridovirus in Taiwan (TGIV) in cultured hybrid grouper, giant seaperch and largemouth bass. J. Aquat. Anim. Health 14, 104-113.
4. Chinchar, V. G., S. Essbauer, J. G. He, A. Hyatt, T. Miyazaki, V. Seligy, and T. Williams. 2005. Family Iridoviridae, p. 145-162. In C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (eds.), Virus taxonomy, Eighth report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, USA.
5. Do, J. W., C. H. Moon, H. J. Kim, M. S. Ko, S. B. Kim, J. H. Son, J. S. Kim, E. J. An, M. K. Kim, S. K. Lee, and et al. 2004. Complete genomic DNA sequence of rock bream iridovirus. Virology 325, 351-363.
6. Do, J. W., S. J. Cha, J. S. Kim, E. J. An, N. S. Lee, H. J. Choi, C. H. Lee, M. S. Park, J. W. Kim, Y. C. Kim and et al. 2005a. Phylogenetic analysis of the major capsid protein gene of iridovirus isolates from cultured flounders Paralichthys olivaceus in Korea. Dis. Aquat. Org. 64, 193-200.
7. Do, J. W., S. J. Cha, J. S. Kim, E. J. An, M. S. Park, J. W. Kim, Y. C. Kim, M. A. Park, and J. W. Park. 2005b. Sequence variation in the gene encoding the major capsid protein of Korean fish iridoviruses. Arch. Virol. 150, 351-359.
8. Gibson-Kueh, S., G. H. Ngoh-Lim, P. Netto, J. Kurita, K. Nakajima, and M. L. Ng. 2004. A systemic iridoviral disease in mullet, Mugilcephalus L., and tiger grouper, Epinephelus foscoguttatus Forsskal: a first report and study. J. Fish Dis. 27, 693-699.
9. Go, J., M. Lancaster, K. Deece, O. Dhungyel, and R. Whittington. 2006. The molecular epidemiology of iridovirus in Murray cod (Maccullochellapeelii peelii) and dwarf gourami (Colisa lalia) from distant biogeographical regions suggests a link between trade in ornamental fish and emerging iridoviral diseases. Mol. Cell. Probes 20, 212-222.
10. Hanson, L. A., L. P. Hanson, K. O. Meals, V. G. Chinchar, M. Rudis. 2001. Persistence of largemouth bass virus infection in a Northern Mississippi reservoir after a die-off. J. Aquat. Anim. Health 13, 27-34.
11. He, J. G., K. Zeng, S. P. Weng, and S. M. Chan. 2000. Systemic disease caused by an iridovirus-like agent in cultured mandarinfish, Siniperca chuatsi (Basillewsky), in China. J. Fish Dis. 23, 219-222.
12. He, J. G., M. Deng, S. P. Weng, Z. Li, S. Y. Zhou, Q. X. Long, X. Z. Wang, and S. M. Chan. 2001. Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus. Virology 291, 126-139.
13. Imajoh, M., T. Ikawa, and S. Oshima. 2007. Characterization of a new fibroblast cell line from a tail fin of red sea bream, Pagrus major, and phylogenetic relationships of a recent RSIV isolate in Japan. Virus Res. 126, 45-52.
14. Inouye, K., K. Yamano, Y. Maeno, K. Nakajima, M. Matsuoka, Y. Wada, and M. Sorimachi. 1992. Iridovirus infection of cultured red sea bream, Pagrus major. Fish Pathol. 27, 19-27.
15. Jeong, J. B., H. Y. Kim, K. H. Kim, J. K. Chung, J. L. Komisar, and H. D. Jeong. 2006. Molecular comparison of iridoviruses isolated from marine fish cultured in Korea and imported from China. Aquaculture 255, 105-116.
16. Jeong, J. B., K. H. Park, H. Y. Kim, S. H. Hong, K. H. Kim, J. K. Chung, J. L. Komisar, and H. D. Jeong. 2004. Multiplex PCR for the diagnosis of red sea bream iridoviruses isolated in Korea. Aquaculture 235, 139-152.
17. Jeong, J. B., L. J. Jun, M. H. Yoo, M. S. Kim, J. L. Komisar, and H. D. Jeong. 2003. Characterization of the DNA nucleotide sequences in the genome of red sea bream iridoviruses isolated in Korea. Aquaculture 220, 119-133.
18. Kawakami, H. and K. Nakajima. 2002. Cultured fish species affected by red sea bream iridoviral disease from 1996 to 2000. Fish Pathol. 37, 45-47.
19. Kim, T. J., E. J. Jang, and J. I. Lee. 2008. Vaccination of rock bream, Oplegnathus fasciatus (Temminck & Schlegel), using a recombinant major capsid protein of fish iridovirus. J. Fish Dis. 31, 547-551.
20. Kim, T. J., T. S. Jung, and J. I. Lee. 2007. Expression and serological application of a capsid protein of an iridovirus isolated from rock bream, Oplegnathus fasciatus (Temminck & Schlegel). J. Fish Dis. 30, 691-699.
21. Kim, W. S., M. J. Oh, S. J. Jung, Y. J. Kim, and S. I. Kitamura. 2005. Characterization of an iridovirus detected from cultured turbot Scophthalmus maximus in Korea. Dis. Aquat. Org. 64, 175-180.
22. Kurita, J., K. Nakajima, I. Hirono, and T. Aoki. 1998. Polymerase chain reaction (PCR) amplification of DNA of red sea bream iridovirus (RSIV). Fish Pathol. 33, 17-23.
23. Lü, L., S. Y. Zhou, C. Chen, S. P. Weng, S. M. Chan, and J. G. He. 2005. Complete genome sequence analysis of an iridovirus isolated from orange-spotted grouper, Epinephelus coioides. Virology 339, 81-100.
24. Mahardika, K., Haryanti, A. Muzaki, and T. Miyazaki. 2008. Histopathological and ultrastructural features of enlarged cells of humpback grouper Cromileptes altivelis challenged with Megalocytivirus (family Iridoviridae) after vaccination. Dis. Aquat. Org. 79, 163-168.
25. Nakajima, K., T. Ito, J. Kurita, H. Kawakami, T. Itano, Y. Fukuda, Y. Aoi, T. Tooriyama, and S. Manabe. 2002. Effectiveness of a vaccine against red sea bream iridoviral disease in various cultured marine fish under laboratory conditions. Fish Pathol. 37, 90-91.
26. Nakajima, K., Y. Maeno, A. Honda, K. Yokoyama, T. Tooriyama, and S. Manabe. 1999. Effectiveness of a vaccine against red sea bream iridoviral disease in a field trial test. Dis. Aquat. Org. 36, 73-75.
27. Nakajima, K., Y. Maeno, J. Kurita, and Y. Inui. 1997. Vaccination against red sea bream iridoviral disease in red sea bream. Fish Pathol. 32, 205-209.
28. Park, S. J., H. J. Seo, J. H. Son, H. J. Kim, Y. I. Kim, K. H. Kim, Y. K. Nam, and S. K. Kim. 2005. Development of DNA vaccine against red sea bream iridovirus (RSIV). J. Microbiol. Biotechnol. 15, 873-879.
29. Perrière, G. and M. Gouy. 1996. www-Query: An on-line retrieval system for biological sequence banks. Biochemie 78, 364-369.
30. Shi, C. Y., Y. G. Wang, S. L. Yang, J. Huang, and Q. Y. Wang. 2004. The first report of an iridovirus-like agent infection in farmed turbot, Scophthalmus maximus, in China. Aquaculture 236, 11-25.
31. Shinmoto, H., K. Taniguchi, T. Ikawa, K. Kawai, and S. I. Oshima. 2009. Phenotypic diversity of infectious red sea bream iridovirus isolates from cultured fish in Japan. Appl. Environ. Microbiol. 75, 3535-3541.
32. Song, J. Y., S. I. Kitamura, S. J. Jung, T. Miyadai, S. Tanaka, Y. Fukuda, S. R. Kim, and M. J. Oh. 2008. Genetic variation and geographic distribution of megalocytiviruses. J. Microbiol. 46, 29-33.
33. Sudthongkong, C., M. Miyata, and T. Miyazaki. 2002. Viral DNA sequences of genes encoding the ATPase and the major capsid protein of tropical iridovirus isolates which are pathogenic to fishes in Japan, South China Sea and Southeast Asian countries. Arch. Virol. 147, 2089-2109.
34. Tamaru, Y., M. Ohtsuka, K. Kato, S. Manabe, K. Kuroda, M. Snada, and M. Ueda. 2006. Application of the arming system for the expression of the 380R antigen from red sea bream iridovirus (RSIV) on the surface of yeast cells: A first step for the development of an oral vaccine. Biotechnol. Prog. 22, 949-953.
35. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
36. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
37. Qin, Q. W., S. F. Chang, G. H. Ngoh-Lim, S. Gibson-Kueh, C. Shi, and T. J. Lam. 2003. Characterization of a novel ranavirus isolated from grouper Epinephelus tauvina. Dis. Aquat. Org. 53, 1-9.
38. Wang, C. M., S. Y. Chao, C. C. Ku, C. M. Wen, and A. A. Shih. 2009. PCR amplification and sequence analysis of major capsid protein gene of megalocytiviruses isolated in Taiwan. J. Fish Dis. 32, 543-550.