Characterization of the DNA nucleotide sequences in the genome of red sea bream iridoviruses isolated in Korea

Aquaculture

Volumn 220, Issue 1-4, 2003, Pages 119-133

  Jeong, Joon Bum ^a   Jun, Lyu Jin ^a   Yoo, Min Ho ^a   Kim, Myong Sug ^b   Komisar, Jack L ^c   Jeong, Hyun Do ^a  

^a Pukyong National University   (South Korea)

^b National Fisheries Research and Development Institute (NFRDI)   (South Korea)

^c WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

Author keywords

Cassette ligation mediated PCR; DNA homology; Gene amplification; Iridovirus; Red sea bream; Repetitive element

Indexed keywords

GENOME; MARICULTURE; VIRAL DISEASE;

KOREA;

ARCHOSARGUS RHOMBOIDALIS; HYPEROGLYPHE POROSA; IRIDOVIRUS;

EID: 0037436998     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0044-8486(02)00538-0     Document Type: Article

References (29)

1. Bahr, U., Springfeld, C., Tidona, C.A., Darai, G., 1999. Structural organization of a conserved gene cluster of Tupaia herpesvirus encoding the DNA polymerase, glycoprotein B, a probable processing and transport protein, and the major DNA binding protein. Virus Res. 60, 123-135.
2. Bugert, J.J., Raab, K., Rosen-Wolff, A., Janssen, W., Darai, G., 1993. Determination of the position of the boundaries of the terminal repetitive sequences within the genome of molluscum contagiosum virus type I by DNA nucleotide analysis. Virology 192, 391-396.
3. Fischer, M., Schnitzler, P., Scholz, J., Rosen-Wolff, A., Delius, H., Darai, G., 1988. DNA nucleotide sequence analysis of the Pvu II DNA fragment L of the genome of insect iridescent virus type 6 reveals a complex cluster of multiple tandem, overlapping and interdigitated repetitive DNA elements. Virology 167, 497-506.
4. He, J.G., Deng, M., Weng, S.P., Li, Z., Zhou, S.Y., Long, Q.X., Wang, X.Z., Chant, S.M., 2001. Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus. Virology 291, 126-139.
5. He, J.G., Lu, L., Deng, M., He, H.H., Weng, S.P., Wang, X.H., Zhou, S.Y., Long, Q.X., Wang, X.Z., Chant, S.M., 2002. Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog. Virology 292, 185-197.
6. Hyatt, A.D., Gould, A.R., Zupanovic, Z., Cunningham, A.A., Hengstherger, S., Whittington, R.J., Kattenbelt, J., Coupar, B.E., 2000. Comparative studies of piscine and amphibian iridoviruses. Arch. Virol. 145, 301-331.
7. Inouye, K., Yamano, K., Maeno, Y., Nakajima, K., Matsuoka, M., Wada, Y., Sorimachi, M., 1992. Iridovirus infection of cultured red sea bream, Pagrus major. Fish Pathol. 27, 19-27 (in Japanese with English abstract).
8. Jung, S.J., Oh, M.J., 2000. Iridovirus-like infection associated with high mortalities of striped beakperch, Oplegnathus fasciatus (Temminck et Schlegel), in southern coastal areas of the Korean peninsula. J. Fish Dis. 23, 223-226.
9. Kurita, J., Nakajima, K., Hirono, I., Aoki, T., 1997. Molecular sequence analysis and PCR diagnosis of red sea bream iridovirus. NRIA International Workshop: New Approach to Viral Diseases of Aquatic Animals, Kyoto, pp. 108-118.
10. Kurita, J., Nakajima, K., Hirono, I., Aoki, T., 1998. Polymerase chain reaction (PCR) amplification of DNA of red sea bream iridovirus (RSIV). Fish Pathol. 33, 17-23.
11. Mao, J., Tham, T.N., Gentry, G.A., Aubertin, A., Chinchar, V.G., 1996. Cloning, sequence analysis, and expression of the major capsid protein of the iridovirus frog virus 3. Virology 216, 431-436.
12. Matsuoka, S., Inouye, K., Nakajima, K., 1996. Cultured fish species affected by red sea bream iridoviral disease from 1991 to 1995. Fish Pathol. 31, 233-234 (in Japanese with English summary).
13. Miyata, M., Matsuno, K., Jung, S.J., Danayadol, Y., Miyazaki, T., 1997. Genetic similarity of iridoviruses from Japan and Thailand. J. Fish Dis. 20, 127-134.
14. Nakajima, K., 1997. Red sea bream iridovirus in Japan: antigen analysis and comparison with other fish iridoviruses. NRIA International Workshop: New Approach to Viral Diseases of Aquatic Animals, Kyoto. National Research Institute of Aquaculture, Nansei, Japan, pp. 108-118.
15. Oshima, S., Hata, J., Hirasawa, N., Ohtaka, T., Hirono, I., Aoki, T., Yamashita, S., 1998. Rapid diagnosis of red sea bream iridovirus infection using the polymerase chain reaction. Dis. Aquat. Org. 32, 87-90.
16. Pickup, D.J., Bastia, D., Stone, H.O., Joklik, W.K., 1982. Sequence of terminal regions of cowpox virus DNA: arrangement of repeated and unique sequence elements. Proc. Natl. Acad. Sci. U. S. A. 79, 7112-7116.
17. Reddy, E.P., Smith, M.J., Canaani, E., Robbins, K.C., Tronick, S.R., Zain, S., Aaronson, S.A., 1980. Nucleotide sequence analysis of the transforming region and large terminal redundancies of Moloney murine sarcoma virus. Proc. Natl. Acad. Sci. U. S. A. 77, 5234-5238.
18. Schnitzler, P., Darai, G., 1989. Characterization of the repetitive DNA elements in the genome of fish lymphocystis disease viruses. Virology 172, 32-41.
19. Schnitzler, P., Darai, G., 1993. Identification of the gene encoding the major capsid protein of fish lymphocystis disease virus. J. Gen. Virol. 74, 2143-2150.
20. Schnitzler, P., Delius, H., Scholz, J., Touray, M., Orth, E., Darai, G., 1987. Identification and nucleotide sequence analysis of the repetitive DNA element in the genome of fish lymphocystis disease virus. Virology 161, 570-578.
21. Sohn, S.G., Choi, D.L., Do, J.W., Hwang, G.Y., Park, J.W., 2000. Mass mortalities of cultured striped beakperch, Oplegnathus fasciatus by iridoviral infection. J. Fish Pathol. 13 (2), 121-127 (in Korean with English abstract).
22. Stohwasser, R., Raab, K., Schnitzler, P., Janssen, W., Darai, G., 1993. Identification of the gene encoding the major capsid protein of insect iridescent virus type 6 by polymerase chain reaction. J. Gen. Virol. 74, 873-879.
23. Tidona, C.A., Darai, G., 1997. The complete DNA sequence of lymphocystis disease virus. Virology 230, 207-216.
24. Van Regennortel, M.H.V., Fauquet, C.M., Bishop, D.H.L., Carstens, E.B., Estes, M.K., Lemon, S.M., Maniloff, J., Mayo, M.A., McGeoch, D.J., Pringle, C.R., Wickner, E.B., 2000. Virus Taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, New York.
25. Wadsworth, S., Jacob, R.J., Roizman, B., 1975. Anatomy of herpes virus DNA. Size, composition and arrangement inverted terminal repetitions. J. Virol. 15, 1487-1497.
26. Webby, R.J., Kalmakoff, J., 1998. Sequence comparison of the major capsid protein gene from 18 diverse iridoviruses. Arch. Virol. 143, 1949-1966.
27. Webby, R.J., Kalmakoff, J., 1999. Comparison of the major capsid protein genes, terminal redundancies, and DNA-DNA homologies of two New Zealand iridoviruses. Virus Res. 59, 179-189.
28. Wittek, R., Moss, B., 1980. Tandem repeats within the inverted terminal repetition of vaccinia virus DNA. Cell 21, 277-284.
29. Yu, Y.X., Bearzotti, M., Vende, P., Ahne, W., Bremont, M., 1999. Partial mapping and sequencing of a fish iridovirus genome reveals genes homologous to the frog virus 3 p31, p40 and human elF2alpha. Virus Res. 63, 53-63.